Wall clock time and date at job start Tue Mar 31 2020 11:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48490 * 109.47085 * 240.00309 * 3 2 1 5 5 H 1.48504 * 109.46769 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46916 * 120.00147 * 3 2 1 7 7 C 1.38814 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64939 * 0.02976 * 9 7 2 11 11 C 1.54915 * 104.92609 * 155.79370 * 10 9 7 12 12 C 1.55439 * 101.45240 * 37.00513 * 11 10 9 13 13 H 1.08997 * 110.86297 * 82.95852 * 12 11 10 14 14 O 1.42902 * 110.70646 * 206.14718 * 12 11 10 15 15 C 1.35905 * 116.99870 * 198.53022 * 14 12 11 16 16 C 1.38756 * 120.04674 * 354.61254 * 15 14 12 17 17 C 1.38137 * 119.96752 * 179.75106 * 16 15 14 18 18 C 1.38265 * 120.06857 * 0.55518 * 17 16 15 19 19 C 1.38369 * 120.09414 * 359.69782 * 18 17 16 20 20 Cl 1.73605 * 119.98394 * 180.02562 * 19 18 17 21 21 C 1.38274 * 120.03089 * 0.02889 * 19 18 17 22 22 C 1.50707 * 120.03283 * 179.97438 * 21 19 18 23 23 Cl 1.80300 * 109.46758 * 270.01716 * 22 21 19 24 24 C 1.47027 * 125.64749 * 180.02562 * 9 7 2 25 25 H 0.96997 * 120.00040 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.36244 * 274.68351 * 10 9 7 27 27 H 1.09002 * 110.36344 * 36.89942 * 10 9 7 28 28 H 1.08994 * 110.99910 * 155.13710 * 11 10 9 29 29 H 1.08999 * 111.00178 * 278.98778 * 11 10 9 30 30 H 1.08002 * 120.01851 * 0.02915 * 16 15 14 31 31 H 1.07996 * 119.96809 * 180.29976 * 17 16 15 32 32 H 1.07994 * 119.95699 * 179.72460 * 18 17 16 33 33 H 1.08995 * 109.46928 * 30.01774 * 22 21 19 34 34 H 1.09004 * 109.47090 * 150.02078 * 22 21 19 35 35 H 1.09002 * 109.88241 * 300.50288 * 24 9 7 36 36 H 1.09000 * 109.88249 * 61.51346 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4042 -3.9311 -0.6143 12 6 0.7785 -4.7524 -0.0287 13 1 0.5481 -5.1009 0.9780 14 8 1.1005 -5.8530 -0.8814 15 6 1.8265 -6.8642 -0.3360 16 6 2.3160 -6.7490 0.9572 17 6 3.0493 -7.7800 1.5118 18 6 3.3059 -8.9218 0.7754 19 6 2.8236 -9.0373 -0.5163 20 17 3.1470 -10.4724 -1.4381 21 6 2.0843 -8.0101 -1.0734 22 6 1.5595 -8.1356 -2.4805 23 17 2.7782 -7.4814 -3.6370 24 6 1.9319 -3.7275 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5272 -2.4874 1.0178 27 1 -0.5994 -1.7573 -0.6142 28 1 -1.3623 -4.3301 -0.2814 29 1 -0.3544 -3.8956 -1.7026 30 1 2.1198 -5.8557 1.5316 31 1 3.4261 -7.6924 2.5201 32 1 3.8833 -9.7248 1.2092 33 1 1.3716 -9.1854 -2.7059 34 1 0.6310 -7.5721 -2.5737 35 1 2.5588 -3.8507 -0.8837 36 1 2.5301 -3.8636 0.9004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222819284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:25 Heat of formation + Delta-G solvation = -17.315497 kcal Electronic energy + Delta-G solvation = -21636.569874 eV Core-core repulsion = 18172.820902 eV Total energy + Delta-G solvation = -3463.748972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57342 -39.52115 -37.96536 -37.19703 -36.92475 -34.37512 -33.42880 -31.43466 -30.72541 -29.16048 -27.68326 -26.55166 -23.94808 -22.89663 -22.04620 -21.57938 -19.27318 -19.02395 -17.50136 -17.17686 -16.75686 -16.69612 -16.17613 -15.76032 -15.57790 -15.02399 -14.76652 -14.59544 -14.35950 -14.16886 -13.87654 -13.67448 -13.36684 -12.98565 -12.86564 -12.72967 -12.57972 -12.44669 -12.17534 -12.09034 -12.07933 -11.82011 -11.62357 -11.45877 -11.34198 -11.27499 -10.77150 -9.85767 -9.29202 -8.95064 -7.81129 -5.26369 -0.12133 0.21495 0.93995 1.46855 1.49115 1.49669 1.56055 2.10848 2.48583 2.60254 3.29838 3.40647 3.57594 3.64228 3.68483 3.90995 3.93870 4.02588 4.10131 4.29918 4.35922 4.38738 4.56089 4.63328 4.71382 4.86649 4.94024 4.96503 5.09613 5.18198 5.31892 5.42394 5.54637 5.57205 5.74493 6.25172 6.31804 7.06665 7.71897 8.33950 9.20634 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.003339 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.497876 B = 8383.590010 C = 8733.731640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.623 5.623 10 C 0.154 3.846 11 C -0.120 4.120 12 C 0.088 3.912 13 H 0.101 0.899 14 O -0.303 6.303 15 C 0.149 3.851 16 C -0.214 4.214 17 C -0.050 4.050 18 C -0.149 4.149 19 C 0.011 3.989 20 Cl -0.051 7.051 21 C -0.151 4.151 22 C 0.021 3.979 23 Cl -0.191 7.191 24 C 0.118 3.882 25 H 0.250 0.750 26 H 0.003 0.997 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.020 0.980 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -21.765 1.165 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.159 4.159 12 C 0.032 3.968 13 H 0.119 0.881 14 O -0.216 6.216 15 C 0.102 3.898 16 C -0.232 4.232 17 C -0.068 4.068 18 C -0.168 4.168 19 C -0.017 4.017 20 Cl -0.022 7.022 21 C -0.153 4.153 22 C -0.041 4.041 23 Cl -0.165 7.165 24 C -0.008 4.008 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.038 0.962 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.969 -21.610 0.780 21.827 hybrid contribution 0.496 1.205 -0.014 1.303 sum 3.466 -20.406 0.766 20.712 Atomic orbital electron populations 1.69979 1.06078 1.25376 1.58065 1.25603 0.96671 1.00831 1.02202 0.85132 0.77205 0.78704 0.78161 1.20562 1.21617 1.20275 1.19374 0.90970 0.83632 1.43435 0.90415 1.44636 1.02826 1.00433 1.87116 1.21788 0.83967 0.93950 0.97382 1.23045 0.96810 0.94977 1.01024 1.23489 0.95308 0.83734 0.94262 0.88136 1.86138 1.67184 1.28051 1.40226 1.18857 0.91420 0.87285 0.92192 1.21676 1.03934 1.02558 0.95075 1.21312 0.93942 0.90778 1.00810 1.21253 1.02921 1.00397 0.92208 1.20624 0.98810 0.88641 0.93576 1.98373 1.93886 1.36105 1.73786 1.18839 1.06337 0.93457 0.96666 1.23017 0.92595 1.03117 0.85400 1.98732 1.63342 1.89186 1.65207 1.21831 0.94933 0.85682 0.98364 0.94036 0.97908 0.90137 0.88093 0.91337 0.84322 0.81586 0.82092 0.86289 0.87430 0.96191 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.16 10.09 21.65 0.22 -54.94 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 3 Si 0.98 45.22 29.55 68.60 2.03 47.24 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -13.77 10.27 84.03 0.86 -12.91 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -31.92 3.39 -691.93 -2.35 -34.27 16 10 C 0.15 7.33 5.89 86.86 0.51 7.84 16 11 C -0.12 -4.34 6.83 32.09 0.22 -4.12 16 12 C 0.09 2.94 2.78 31.88 0.09 3.03 16 13 H 0.10 2.91 6.58 -2.39 -0.02 2.90 16 14 O -0.30 -9.45 8.92 -92.48 -0.83 -10.27 16 15 C 0.15 4.01 6.60 22.50 0.15 4.15 16 16 C -0.21 -5.01 8.77 22.37 0.20 -4.81 16 17 C -0.05 -0.89 10.04 22.25 0.22 -0.66 16 18 C -0.15 -2.57 9.83 22.31 0.22 -2.35 16 19 C 0.01 0.22 6.31 22.31 0.14 0.36 16 20 Cl -0.05 -0.92 27.29 -2.72 -0.07 -1.00 16 21 C -0.15 -3.64 5.27 -19.75 -0.10 -3.74 16 22 C 0.02 0.47 6.16 71.24 0.44 0.91 16 23 Cl -0.19 -5.17 29.13 -2.72 -0.08 -5.25 16 24 C 0.12 4.87 6.51 86.73 0.56 5.43 16 25 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.08 4.40 5.87 -2.39 -0.01 4.39 16 28 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.14 3.30 5.31 -2.91 -0.02 3.29 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.12 2.20 6.90 -2.39 -0.02 2.19 16 34 H 0.11 2.45 7.53 -2.38 -0.02 2.43 16 35 H 0.02 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 Total: -1.00 -64.00 324.81 4.00 -60.00 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.11 Total: 8.24 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.98 Total: -9.76 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.13 Total: -89.21 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.83 Total: -10.27 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -6.09 SS G_CDS: -0.15 Total: -6.25 kcal Total: -64.00 4.00 -60.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222819284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.686 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds