Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99594 * 2 1 4 4 H 1.48501 * 109.46743 * 239.99971 * 3 2 1 5 5 H 1.48497 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47155 * 119.99726 * 3 2 1 7 7 C 1.38810 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47288 * 125.79528 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.30787 * 178.92110 * 10 9 7 12 12 C 1.55157 * 102.94058 * 337.81044 * 11 10 9 13 13 H 1.08998 * 111.00383 * 277.43236 * 12 11 10 14 14 O 1.42901 * 111.00397 * 153.57584 * 12 11 10 15 15 C 1.35929 * 116.99552 * 151.67579 * 14 12 11 16 16 C 1.38855 * 120.05881 * 95.17208 * 15 14 12 17 17 Cl 1.73606 * 120.03810 * 359.96664 * 16 15 14 18 18 C 1.38218 * 119.92139 * 179.69925 * 16 15 14 19 19 C 1.38288 * 120.04016 * 0.56569 * 18 16 15 20 20 C 1.38226 * 120.12079 * 359.72396 * 19 18 16 21 21 C 1.38190 * 120.07760 * 359.97438 * 20 19 18 22 22 C 1.50703 * 120.02113 * 179.97438 * 21 20 19 23 23 Cl 1.80303 * 109.47428 * 275.69303 * 22 21 20 24 24 C 1.47432 * 125.64651 * 179.97438 * 9 7 2 25 25 H 0.97003 * 120.00681 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.86352 * 59.49253 * 10 9 7 27 27 H 1.09010 * 109.87073 * 298.34739 * 10 9 7 28 28 H 1.09005 * 110.72154 * 219.45078 * 11 10 9 29 29 H 1.08999 * 110.87522 * 96.24314 * 11 10 9 30 30 H 1.07997 * 119.97631 * 180.27188 * 18 16 15 31 31 H 1.08001 * 119.93803 * 179.75222 * 19 18 16 32 32 H 1.08003 * 119.96089 * 179.97438 * 20 19 18 33 33 H 1.09002 * 109.47017 * 35.69538 * 22 21 20 34 34 H 1.09003 * 109.47192 * 155.69627 * 22 21 20 35 35 H 1.08996 * 110.36090 * 85.27197 * 24 9 7 36 36 H 1.08991 * 110.36504 * 323.05913 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1397 -2.5368 0.0017 11 6 -0.4477 -4.0487 -0.0247 12 6 0.8539 -4.6583 -0.6092 13 1 0.8588 -4.5987 -1.6975 14 8 1.0294 -6.0072 -0.1713 15 6 1.7199 -6.8386 -0.9957 16 6 3.0809 -7.0359 -0.8035 17 17 3.9032 -6.2201 0.4897 18 6 3.7791 -7.8867 -1.6396 19 6 3.1253 -8.5318 -2.6735 20 6 1.7718 -8.3320 -2.8701 21 6 1.0677 -7.4872 -2.0333 22 6 -0.4079 -7.2699 -2.2491 23 17 -0.6510 -5.9874 -3.4929 24 6 1.9337 -3.7311 0.0017 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5607 -2.0572 -0.8819 27 1 -0.5575 -2.0891 0.9036 28 1 -1.2973 -4.2580 -0.6747 29 1 -0.6318 -4.4252 0.9815 30 1 4.8367 -8.0442 -1.4882 31 1 3.6733 -9.1932 -3.3283 32 1 1.2639 -8.8368 -3.6786 33 1 -0.8658 -8.1984 -2.5902 34 1 -0.8703 -6.9595 -1.3121 35 1 2.1676 -4.0414 1.0201 36 1 2.8336 -3.7401 -0.6130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222971343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = -18.498693 kcal Electronic energy + Delta-G solvation = -22113.249735 eV Core-core repulsion = 18649.449456 eV Total energy + Delta-G solvation = -3463.800279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34281 -39.37884 -37.61890 -37.49709 -36.88881 -34.30200 -33.26907 -31.47622 -30.70113 -28.97021 -27.74216 -26.40173 -23.68349 -22.92662 -22.00653 -21.82285 -19.15550 -18.97011 -17.44176 -17.32406 -16.79417 -16.41512 -16.13092 -15.56136 -15.20749 -14.93426 -14.88367 -14.47712 -14.44444 -14.18531 -13.82843 -13.76977 -13.35244 -13.03879 -12.88003 -12.73166 -12.36549 -12.34957 -12.20294 -12.09200 -11.93847 -11.77784 -11.68526 -11.41345 -11.24062 -10.86582 -10.72346 -9.84591 -9.63282 -8.94552 -7.87036 -5.23786 -0.13226 0.00655 1.14666 1.44506 1.47842 1.48261 1.54576 2.22685 2.49378 2.81816 3.31650 3.39927 3.64062 3.76375 3.80107 3.96125 4.10132 4.14377 4.18482 4.20495 4.34095 4.46877 4.59779 4.71645 4.75198 4.86695 4.97596 5.04381 5.12209 5.22361 5.31086 5.40274 5.58857 5.64338 5.69712 6.14408 6.41754 7.06428 7.71742 8.36820 9.23416 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004727 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.321582 B = 5922.338857 C = 7040.431340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.624 5.624 10 C 0.189 3.811 11 C -0.122 4.122 12 C 0.100 3.900 13 H 0.075 0.925 14 O -0.323 6.323 15 C 0.097 3.903 16 C -0.075 4.075 17 Cl -0.069 7.069 18 C -0.094 4.094 19 C -0.104 4.104 20 C -0.079 4.079 21 C -0.125 4.125 22 C 0.011 3.989 23 Cl -0.191 7.191 24 C 0.127 3.873 25 H 0.249 0.751 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.025 0.975 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -22.543 -7.068 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.352 5.352 10 C 0.064 3.936 11 C -0.160 4.160 12 C 0.044 3.956 13 H 0.093 0.907 14 O -0.240 6.240 15 C 0.052 3.948 16 C -0.102 4.102 17 Cl -0.040 7.040 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.051 4.051 23 Cl -0.165 7.165 24 C 0.001 3.999 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.193 0.807 32 H 0.184 0.816 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.043 0.957 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.842 -22.194 -6.858 23.403 hybrid contribution 0.488 1.598 0.359 1.709 sum 3.330 -20.596 -6.499 21.852 Atomic orbital electron populations 1.70146 1.06225 1.25559 1.57802 1.25641 0.96655 1.00895 1.02175 0.85148 0.77221 0.78701 0.78232 1.20250 1.21621 1.20344 1.19366 0.90863 0.83544 1.43810 0.90349 1.44687 1.02498 1.00717 1.87265 1.20941 0.83691 0.90564 0.98430 1.22840 0.96166 0.95127 1.01893 1.23409 0.95943 0.78375 0.97881 0.90663 1.86026 1.72851 1.20210 1.44887 1.18639 0.89056 0.94331 0.92770 1.21657 0.92031 1.01350 0.95155 1.98393 1.78191 1.78350 1.49055 1.21414 1.01521 0.94508 0.93849 1.21564 0.94356 0.99323 0.96966 1.21458 0.94655 0.95791 0.97759 1.20192 0.96404 1.00414 0.95586 1.23257 0.93163 0.94170 0.94543 1.98762 1.97337 1.59331 1.61043 1.21957 0.94951 0.85251 0.97720 0.94166 0.96217 0.96689 0.89182 0.90398 0.82542 0.80742 0.81550 0.84131 0.87984 0.95731 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 10.34 21.65 0.22 -57.93 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 3 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.51 10.28 84.03 0.86 -13.65 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -34.06 3.40 -691.37 -2.35 -36.41 16 10 C 0.19 9.73 5.38 86.68 0.47 10.19 16 11 C -0.12 -4.78 6.69 31.78 0.21 -4.57 16 12 C 0.10 3.79 3.42 31.98 0.11 3.90 16 13 H 0.08 2.90 6.93 -2.39 -0.02 2.88 16 14 O -0.32 -10.69 8.32 -92.74 -0.77 -11.46 16 15 C 0.10 2.68 5.58 22.52 0.13 2.81 16 16 C -0.07 -1.96 6.33 22.41 0.14 -1.81 16 17 Cl -0.07 -2.05 26.91 -2.72 -0.07 -2.12 16 18 C -0.09 -1.73 9.83 22.28 0.22 -1.51 16 19 C -0.10 -1.37 10.04 22.28 0.22 -1.15 16 20 C -0.08 -1.14 9.72 22.26 0.22 -0.92 16 21 C -0.12 -2.63 5.27 -19.77 -0.10 -2.73 16 22 C 0.01 0.20 6.47 71.24 0.46 0.66 16 23 Cl -0.19 -4.72 28.15 -2.72 -0.08 -4.79 16 24 C 0.13 5.76 5.77 86.84 0.50 6.26 16 25 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.02 1.12 7.39 -2.39 -0.02 1.10 16 27 H 0.01 0.85 7.52 -2.38 -0.02 0.83 16 28 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.14 1.58 8.12 -2.39 -0.02 1.56 16 34 H 0.10 2.13 7.36 -2.39 -0.02 2.12 16 35 H 0.02 1.15 7.81 -2.39 -0.02 1.14 16 36 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 Total: -1.00 -70.72 328.05 3.97 -66.75 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.09 Total: 2.64 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 3.90 Total: -5.58 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -2.13 Total: -94.34 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.77 Total: -11.46 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 17 Polarization: -6.77 SS G_CDS: -0.15 Total: -6.92 kcal Total: -70.72 3.97 -66.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222971343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.253 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds