Wall clock time and date at job start Tue Mar 31 2020 11:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99974 * 2 1 4 4 H 1.48502 * 109.47027 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.46912 * 119.99569 * 3 2 1 6 6 H 1.48503 * 109.46895 * 239.99862 * 3 2 1 7 7 C 1.38811 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99529 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00498 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64451 * 359.69391 * 9 7 2 11 11 C 1.55125 * 104.72228 * 155.81567 * 10 9 7 12 12 C 1.55154 * 101.48523 * 37.29359 * 11 10 9 13 13 H 1.09005 * 110.87220 * 82.76862 * 12 11 10 14 14 O 1.42901 * 110.71895 * 205.96632 * 12 11 10 15 15 C 1.35929 * 116.99623 * 198.63908 * 14 12 11 16 16 C 1.38702 * 120.06344 * 354.62244 * 15 14 12 17 17 C 1.38149 * 119.95952 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.96369 * 180.02562 * 17 16 15 19 19 Cl 1.80297 * 109.46978 * 90.00164 * 18 17 16 20 20 C 1.38283 * 120.07714 * 0.02562 * 17 16 15 21 21 C 1.38247 * 120.11492 * 359.97438 * 20 17 16 22 22 C 1.38261 * 120.04660 * 359.77125 * 21 20 17 23 23 Cl 1.73594 * 120.04021 * 180.27413 * 22 21 20 24 24 C 1.47018 * 125.65199 * 180.02562 * 9 7 2 25 25 H 0.97002 * 120.00414 * 0.02562 * 1 2 3 26 26 H 1.09009 * 110.36759 * 274.74652 * 10 9 7 27 27 H 1.09003 * 110.37108 * 37.06565 * 10 9 7 28 28 H 1.08994 * 111.19335 * 279.18936 * 11 10 9 29 29 H 1.09008 * 110.93508 * 155.28701 * 11 10 9 30 30 H 1.08003 * 120.02215 * 0.02878 * 16 15 14 31 31 H 1.09002 * 109.46689 * 210.00340 * 18 17 16 32 32 H 1.09001 * 109.46839 * 329.99860 * 18 17 16 33 33 H 1.07996 * 119.94051 * 179.97438 * 20 17 16 34 34 H 1.08004 * 119.97694 * 180.02562 * 21 20 17 35 35 H 1.09006 * 109.87827 * 300.43661 * 24 9 7 36 36 H 1.08996 * 109.88333 * 61.44555 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0064 11 6 -0.4017 -3.9325 -0.6106 12 6 0.7784 -4.7524 -0.0255 13 1 0.5482 -5.1001 0.9816 14 8 1.1002 -5.8537 -0.8773 15 6 1.8240 -6.8659 -0.3303 16 6 2.3114 -6.7514 0.9632 17 6 3.0473 -7.7813 1.5168 18 6 3.5764 -7.6572 2.9225 19 17 2.3585 -8.3065 4.0825 20 6 3.2989 -8.9258 0.7827 21 6 2.8146 -9.0432 -0.5068 22 6 2.0731 -8.0178 -1.0639 23 17 1.4590 -8.1684 -2.6806 24 6 1.9318 -3.7275 0.0016 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5230 -2.4888 1.0266 27 1 -0.6019 -1.7576 -0.6057 28 1 -0.3523 -3.8986 -1.6989 29 1 -1.3591 -4.3332 -0.2772 30 1 2.1158 -5.8578 1.5373 31 1 4.5030 -8.2241 3.0131 32 1 3.7689 -6.6081 3.1469 33 1 3.8747 -9.7293 1.2176 34 1 3.0121 -9.9383 -1.0780 35 1 2.5584 -3.8514 -0.8817 36 1 2.5303 -3.8628 0.9024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223719016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:09 Heat of formation + Delta-G solvation = -18.468451 kcal Electronic energy + Delta-G solvation = -21510.766743 eV Core-core repulsion = 18046.967775 eV Total energy + Delta-G solvation = -3463.798968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.51619 -39.52151 -37.85910 -37.49278 -36.79724 -34.35829 -33.12818 -31.55908 -30.78955 -29.27191 -27.57596 -26.53716 -24.02632 -22.83034 -21.99496 -21.66221 -19.15945 -19.03927 -17.55263 -17.23412 -16.85695 -16.68729 -15.87232 -15.66578 -15.40271 -15.16522 -14.95619 -14.75075 -14.29981 -14.12996 -13.80748 -13.65469 -13.28921 -12.98158 -12.94777 -12.74446 -12.62360 -12.33150 -12.24675 -12.08229 -11.87214 -11.78501 -11.67042 -11.49355 -11.39555 -11.34801 -10.77849 -9.89155 -9.22638 -8.96100 -7.81073 -5.26929 -0.15695 0.27336 1.17076 1.45180 1.46998 1.50016 1.56473 2.03224 2.48383 2.62669 3.29957 3.38349 3.59223 3.60886 3.68464 3.86597 3.89342 4.00373 4.16663 4.30470 4.35796 4.48612 4.55285 4.63806 4.70357 4.83771 4.91477 4.94129 5.01715 5.11186 5.35478 5.41718 5.53552 5.62807 5.72936 6.23377 6.29370 7.05602 7.70984 8.33641 9.20823 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.003870 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.628601 B = 7234.204856 C = 8583.890393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.982 3.018 4 H -0.291 1.291 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.155 3.845 11 C -0.122 4.122 12 C 0.087 3.913 13 H 0.094 0.906 14 O -0.304 6.304 15 C 0.120 3.880 16 C -0.187 4.187 17 C -0.065 4.065 18 C 0.010 3.990 19 Cl -0.190 7.190 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.080 4.080 23 Cl -0.066 7.066 24 C 0.120 3.880 25 H 0.250 0.750 26 H 0.002 0.998 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.023 0.977 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -21.186 3.165 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.349 5.349 10 C 0.030 3.970 11 C -0.160 4.160 12 C 0.030 3.970 13 H 0.112 0.888 14 O -0.217 6.217 15 C 0.074 3.926 16 C -0.206 4.206 17 C -0.065 4.065 18 C -0.052 4.052 19 Cl -0.164 7.164 20 C -0.138 4.138 21 C -0.089 4.089 22 C -0.107 4.107 23 Cl -0.037 7.037 24 C -0.006 4.006 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.187 0.813 34 H 0.184 0.816 35 H 0.041 0.959 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.445 -21.003 2.916 22.163 hybrid contribution 0.047 1.337 -0.027 1.338 sum 6.492 -19.666 2.889 20.911 Atomic orbital electron populations 1.69980 1.06185 1.25394 1.58046 1.25623 0.96646 1.00918 1.02149 0.85110 0.77172 0.78574 0.78202 1.21714 1.20237 1.20423 1.19390 0.91023 0.83515 1.43482 0.90193 1.44630 1.02715 1.00445 1.87113 1.21828 0.84148 0.93725 0.97256 1.23027 0.96755 0.95201 1.01014 1.23405 0.95601 0.83920 0.94028 0.88816 1.86221 1.67558 1.28041 1.39861 1.18986 0.93264 0.87955 0.92432 1.21293 1.02942 1.01966 0.94390 1.19803 0.97165 0.93969 0.95581 1.23376 0.92858 1.04057 0.84897 1.98748 1.63757 1.89016 1.64834 1.21255 1.01376 0.97874 0.93302 1.21213 0.94510 0.97341 0.95799 1.20542 1.06209 0.95541 0.88407 1.98361 1.86701 1.97755 1.20893 1.21808 0.94749 0.85592 0.98444 0.94047 0.98002 0.89955 0.91314 0.88589 0.84749 0.84455 0.87253 0.81299 0.81563 0.95863 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.60 10.08 21.65 0.22 -55.38 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 3 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.25 -13.76 10.27 84.03 0.86 -12.89 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -32.15 3.39 -691.56 -2.35 -34.50 16 10 C 0.16 7.59 5.91 86.93 0.51 8.10 16 11 C -0.12 -4.66 6.82 32.06 0.22 -4.44 16 12 C 0.09 3.09 2.77 31.78 0.09 3.17 16 13 H 0.09 3.02 6.58 -2.38 -0.02 3.00 16 14 O -0.30 -10.30 9.34 -92.76 -0.87 -11.17 16 15 C 0.12 3.44 6.62 22.52 0.15 3.59 16 16 C -0.19 -4.64 8.43 22.36 0.19 -4.45 16 17 C -0.06 -1.19 5.26 -19.87 -0.10 -1.29 16 18 C 0.01 0.14 6.78 71.24 0.48 0.62 16 19 Cl -0.19 -3.53 29.13 -2.72 -0.08 -3.61 16 20 C -0.12 -1.79 9.70 22.28 0.22 -1.58 16 21 C -0.07 -1.24 9.83 22.28 0.22 -1.02 16 22 C -0.08 -1.98 6.33 22.41 0.14 -1.84 16 23 Cl -0.07 -1.69 28.50 -2.72 -0.08 -1.77 16 24 C 0.12 5.03 6.51 86.73 0.56 5.59 16 25 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 27 H 0.08 4.58 5.86 -2.39 -0.01 4.57 16 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.13 3.52 5.32 -2.91 -0.02 3.50 16 31 H 0.14 1.06 8.08 -2.39 -0.02 1.04 16 32 H 0.11 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.02 1.03 8.06 -2.38 -0.02 1.01 16 36 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 Total: -1.00 -65.66 328.13 3.98 -61.67 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.10 Total: 6.97 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.01 Total: -9.36 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -2.13 Total: -89.88 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.87 Total: -11.17 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -0.16 Total: -5.38 kcal Total: -65.66 3.98 -61.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223719016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.203 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds