Wall clock time and date at job start Tue Mar 31 2020 11:19:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 119.99974 * 2 1
4 4 H 1.48502 * 109.47027 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.46912 * 119.99569 * 3 2 1
6 6 H 1.48503 * 109.46895 * 239.99862 * 3 2 1
7 7 C 1.38811 * 119.99815 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99529 * 180.02562 * 7 2 1
9 9 N 1.36934 * 120.00498 * 0.02562 * 7 2 1
10 10 C 1.47423 * 125.64451 * 359.69391 * 9 7 2
11 11 C 1.55125 * 104.72228 * 155.81567 * 10 9 7
12 12 C 1.55154 * 101.48523 * 37.29359 * 11 10 9
13 13 H 1.09005 * 110.87220 * 82.76862 * 12 11 10
14 14 O 1.42901 * 110.71895 * 205.96632 * 12 11 10
15 15 C 1.35929 * 116.99623 * 198.63908 * 14 12 11
16 16 C 1.38702 * 120.06344 * 354.62244 * 15 14 12
17 17 C 1.38149 * 119.95952 * 180.02562 * 16 15 14
18 18 C 1.50703 * 119.96369 * 180.02562 * 17 16 15
19 19 Cl 1.80297 * 109.46978 * 90.00164 * 18 17 16
20 20 C 1.38283 * 120.07714 * 0.02562 * 17 16 15
21 21 C 1.38247 * 120.11492 * 359.97438 * 20 17 16
22 22 C 1.38261 * 120.04660 * 359.77125 * 21 20 17
23 23 Cl 1.73594 * 120.04021 * 180.27413 * 22 21 20
24 24 C 1.47018 * 125.65199 * 180.02562 * 9 7 2
25 25 H 0.97002 * 120.00414 * 0.02562 * 1 2 3
26 26 H 1.09009 * 110.36759 * 274.74652 * 10 9 7
27 27 H 1.09003 * 110.37108 * 37.06565 * 10 9 7
28 28 H 1.08994 * 111.19335 * 279.18936 * 11 10 9
29 29 H 1.09008 * 110.93508 * 155.28701 * 11 10 9
30 30 H 1.08003 * 120.02215 * 0.02878 * 16 15 14
31 31 H 1.09002 * 109.46689 * 210.00340 * 18 17 16
32 32 H 1.09001 * 109.46839 * 329.99860 * 18 17 16
33 33 H 1.07996 * 119.94051 * 179.97438 * 20 17 16
34 34 H 1.08004 * 119.97694 * 180.02562 * 21 20 17
35 35 H 1.09006 * 109.87827 * 300.43661 * 24 9 7
36 36 H 1.08996 * 109.88333 * 61.44555 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 1.2851 2.7465 -0.0006
5 1 3.1038 1.6964 1.2125
6 1 3.1039 1.6964 -1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 -0.1415 -2.5332 0.0064
11 6 -0.4017 -3.9325 -0.6106
12 6 0.7784 -4.7524 -0.0255
13 1 0.5482 -5.1001 0.9816
14 8 1.1002 -5.8537 -0.8773
15 6 1.8240 -6.8659 -0.3303
16 6 2.3114 -6.7514 0.9632
17 6 3.0473 -7.7813 1.5168
18 6 3.5764 -7.6572 2.9225
19 17 2.3585 -8.3065 4.0825
20 6 3.2989 -8.9258 0.7827
21 6 2.8146 -9.0432 -0.5068
22 6 2.0731 -8.0178 -1.0639
23 17 1.4590 -8.1684 -2.6806
24 6 1.9318 -3.7275 0.0016
25 1 -0.4851 0.8400 -0.0004
26 1 -0.5230 -2.4888 1.0266
27 1 -0.6019 -1.7576 -0.6057
28 1 -0.3523 -3.8986 -1.6989
29 1 -1.3591 -4.3332 -0.2772
30 1 2.1158 -5.8578 1.5373
31 1 4.5030 -8.2241 3.0131
32 1 3.7689 -6.6081 3.1469
33 1 3.8747 -9.7293 1.2176
34 1 3.0121 -9.9383 -1.0780
35 1 2.5584 -3.8514 -0.8817
36 1 2.5303 -3.8628 0.9024
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001223719016.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:09
Heat of formation + Delta-G solvation = -18.468451 kcal
Electronic energy + Delta-G solvation = -21510.766743 eV
Core-core repulsion = 18046.967775 eV
Total energy + Delta-G solvation = -3463.798968 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 315.053 amu
Computer time = 1.55 seconds
Orbital eigenvalues (eV)
-41.51619 -39.52151 -37.85910 -37.49278 -36.79724 -34.35829 -33.12818 -31.55908
-30.78955 -29.27191 -27.57596 -26.53716 -24.02632 -22.83034 -21.99496 -21.66221
-19.15945 -19.03927 -17.55263 -17.23412 -16.85695 -16.68729 -15.87232 -15.66578
-15.40271 -15.16522 -14.95619 -14.75075 -14.29981 -14.12996 -13.80748 -13.65469
-13.28921 -12.98158 -12.94777 -12.74446 -12.62360 -12.33150 -12.24675 -12.08229
-11.87214 -11.78501 -11.67042 -11.49355 -11.39555 -11.34801 -10.77849 -9.89155
-9.22638 -8.96100 -7.81073 -5.26929 -0.15695 0.27336 1.17076 1.45180
1.46998 1.50016 1.56473 2.03224 2.48383 2.62669 3.29957 3.38349
3.59223 3.60886 3.68464 3.86597 3.89342 4.00373 4.16663 4.30470
4.35796 4.48612 4.55285 4.63806 4.70357 4.83771 4.91477 4.94129
5.01715 5.11186 5.35478 5.41718 5.53552 5.62807 5.72936 6.23377
6.29370 7.05602 7.70984 8.33641 9.20823
Molecular weight = 315.05amu
Principal moments of inertia in cm(-1)
A = 0.013132 B = 0.003870 C = 0.003261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2131.628601 B = 7234.204856 C = 8583.890393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C -0.061 4.061
3 Si 0.982 3.018
4 H -0.291 1.291
5 H -0.276 1.276
6 H -0.278 1.278
7 C -0.246 4.246
8 H 0.080 0.920
9 N -0.622 5.622
10 C 0.155 3.845
11 C -0.122 4.122
12 C 0.087 3.913
13 H 0.094 0.906
14 O -0.304 6.304
15 C 0.120 3.880
16 C -0.187 4.187
17 C -0.065 4.065
18 C 0.010 3.990
19 Cl -0.190 7.190
20 C -0.120 4.120
21 C -0.070 4.070
22 C -0.080 4.080
23 Cl -0.066 7.066
24 C 0.120 3.880
25 H 0.250 0.750
26 H 0.002 0.998
27 H 0.083 0.917
28 H 0.068 0.932
29 H 0.096 0.904
30 H 0.135 0.865
31 H 0.137 0.863
32 H 0.109 0.891
33 H 0.170 0.830
34 H 0.167 0.833
35 H 0.023 0.977
36 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.702 -21.186 3.165 22.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.253 4.253
3 Si 0.809 3.191
4 H -0.217 1.217
5 H -0.202 1.202
6 H -0.204 1.204
7 C -0.374 4.374
8 H 0.098 0.902
9 N -0.349 5.349
10 C 0.030 3.970
11 C -0.160 4.160
12 C 0.030 3.970
13 H 0.112 0.888
14 O -0.217 6.217
15 C 0.074 3.926
16 C -0.206 4.206
17 C -0.065 4.065
18 C -0.052 4.052
19 Cl -0.164 7.164
20 C -0.138 4.138
21 C -0.089 4.089
22 C -0.107 4.107
23 Cl -0.037 7.037
24 C -0.006 4.006
25 H 0.060 0.940
26 H 0.020 0.980
27 H 0.100 0.900
28 H 0.087 0.913
29 H 0.114 0.886
30 H 0.153 0.847
31 H 0.155 0.845
32 H 0.127 0.873
33 H 0.187 0.813
34 H 0.184 0.816
35 H 0.041 0.959
36 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 6.445 -21.003 2.916 22.163
hybrid contribution 0.047 1.337 -0.027 1.338
sum 6.492 -19.666 2.889 20.911
Atomic orbital electron populations
1.69980 1.06185 1.25394 1.58046 1.25623 0.96646 1.00918 1.02149
0.85110 0.77172 0.78574 0.78202 1.21714 1.20237 1.20423 1.19390
0.91023 0.83515 1.43482 0.90193 1.44630 1.02715 1.00445 1.87113
1.21828 0.84148 0.93725 0.97256 1.23027 0.96755 0.95201 1.01014
1.23405 0.95601 0.83920 0.94028 0.88816 1.86221 1.67558 1.28041
1.39861 1.18986 0.93264 0.87955 0.92432 1.21293 1.02942 1.01966
0.94390 1.19803 0.97165 0.93969 0.95581 1.23376 0.92858 1.04057
0.84897 1.98748 1.63757 1.89016 1.64834 1.21255 1.01376 0.97874
0.93302 1.21213 0.94510 0.97341 0.95799 1.20542 1.06209 0.95541
0.88407 1.98361 1.86701 1.97755 1.20893 1.21808 0.94749 0.85592
0.98444 0.94047 0.98002 0.89955 0.91314 0.88589 0.84749 0.84455
0.87253 0.81299 0.81563 0.95863 0.94666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -55.60 10.08 21.65 0.22 -55.38 16
2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16
3 Si 0.98 45.12 29.55 68.60 2.03 47.15 16
4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
7 C -0.25 -13.76 10.27 84.03 0.86 -12.89 16
8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16
9 N -0.62 -32.15 3.39 -691.56 -2.35 -34.50 16
10 C 0.16 7.59 5.91 86.93 0.51 8.10 16
11 C -0.12 -4.66 6.82 32.06 0.22 -4.44 16
12 C 0.09 3.09 2.77 31.78 0.09 3.17 16
13 H 0.09 3.02 6.58 -2.38 -0.02 3.00 16
14 O -0.30 -10.30 9.34 -92.76 -0.87 -11.17 16
15 C 0.12 3.44 6.62 22.52 0.15 3.59 16
16 C -0.19 -4.64 8.43 22.36 0.19 -4.45 16
17 C -0.06 -1.19 5.26 -19.87 -0.10 -1.29 16
18 C 0.01 0.14 6.78 71.24 0.48 0.62 16
19 Cl -0.19 -3.53 29.13 -2.72 -0.08 -3.61 16
20 C -0.12 -1.79 9.70 22.28 0.22 -1.58 16
21 C -0.07 -1.24 9.83 22.28 0.22 -1.02 16
22 C -0.08 -1.98 6.33 22.41 0.14 -1.84 16
23 Cl -0.07 -1.69 28.50 -2.72 -0.08 -1.77 16
24 C 0.12 5.03 6.51 86.73 0.56 5.59 16
25 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16
26 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16
27 H 0.08 4.58 5.86 -2.39 -0.01 4.57 16
28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16
29 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16
30 H 0.13 3.52 5.32 -2.91 -0.02 3.50 16
31 H 0.14 1.06 8.08 -2.39 -0.02 1.04 16
32 H 0.11 1.49 8.08 -2.39 -0.02 1.47 16
33 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16
34 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16
35 H 0.02 1.03 8.06 -2.38 -0.02 1.01 16
36 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16
Total: -1.00 -65.66 328.13 3.98 -61.67
By element:
Atomic # 1 Polarization: 5.87 SS G_CDS: 1.10 Total: 6.97 kcal
Atomic # 6 Polarization: -13.36 SS G_CDS: 4.01 Total: -9.36 kcal
Atomic # 7 Polarization: -87.75 SS G_CDS: -2.13 Total: -89.88 kcal
Atomic # 8 Polarization: -10.30 SS G_CDS: -0.87 Total: -11.17 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Atomic # 17 Polarization: -5.23 SS G_CDS: -0.16 Total: -5.38 kcal
Total: -65.66 3.98 -61.67 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001223719016.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.203 kcal
(2) G-P(sol) polarization free energy of solvation -65.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.468 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.55 seconds