Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48494 * 109.47056 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46962 * 120.00235 * 3 2 1 6 6 H 1.48502 * 109.46908 * 240.00226 * 3 2 1 7 7 C 1.37875 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99759 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.47474 * 111.00171 * 265.97366 * 10 9 7 12 12 C 1.53508 * 87.93468 * 221.29189 * 11 10 9 13 13 O 1.42904 * 114.34521 * 139.67798 * 12 11 10 14 14 C 1.35929 * 116.99431 * 107.84597 * 13 12 11 15 15 C 1.38743 * 120.04395 * 353.94535 * 14 13 12 16 16 C 1.38117 * 119.95353 * 179.76950 * 15 14 13 17 17 C 1.38390 * 120.04610 * 0.50712 * 16 15 14 18 18 Cl 1.73595 * 119.95898 * 179.76505 * 17 16 15 19 19 C 1.38348 * 120.08211 * 359.74409 * 17 16 15 20 20 C 1.38164 * 120.04327 * 0.02562 * 19 17 16 21 21 C 1.50697 * 120.02102 * 179.97438 * 20 19 17 22 22 Cl 1.80299 * 109.47079 * 270.01724 * 21 20 19 23 23 C 1.47478 * 111.00353 * 169.99889 * 10 9 7 24 24 H 0.96991 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47624 * 300.00099 * 9 7 2 26 26 H 1.09004 * 109.47224 * 59.99978 * 9 7 2 27 27 H 1.09005 * 113.47823 * 336.05801 * 11 10 9 28 28 H 1.09004 * 113.48123 * 106.52566 * 11 10 9 29 29 H 1.09002 * 114.17564 * 272.37980 * 12 11 10 30 30 H 1.07999 * 120.01913 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.97727 * 180.22581 * 16 15 14 32 32 H 1.07995 * 119.97739 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47376 * 30.01427 * 21 20 19 34 34 H 1.09002 * 109.47186 * 150.01964 * 21 20 19 35 35 H 1.08995 * 113.47489 * 253.47093 * 23 10 9 36 36 H 1.08996 * 113.47407 * 23.87509 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.4758 -4.0802 -1.3739 12 6 2.4194 -5.5181 -0.8392 13 8 1.7504 -6.4412 -1.7009 14 6 2.5247 -7.3472 -2.3546 15 6 3.9073 -7.2691 -2.2697 16 6 4.6921 -8.1935 -2.9308 17 6 4.1006 -9.1910 -3.6860 18 17 5.0893 -10.3480 -4.5209 19 6 2.7221 -9.2673 -3.7761 20 6 1.9335 -8.3473 -3.1123 21 6 0.4321 -8.4306 -3.2113 22 17 -0.1330 -7.4511 -4.6155 23 6 1.5187 -4.8985 0.2386 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5571 0.8897 26 1 0.6241 -2.5567 -0.8903 27 1 1.6758 -3.8466 -2.0765 28 1 3.4600 -3.7929 -1.7440 29 1 3.3718 -5.8924 -0.4638 30 1 4.3694 -6.4884 -1.6837 31 1 5.7684 -8.1352 -2.8620 32 1 2.2623 -10.0466 -4.3655 33 1 0.1342 -9.4699 -3.3499 34 1 -0.0144 -8.0438 -2.2953 35 1 1.6918 -5.3046 1.2351 36 1 0.4631 -4.8828 -0.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223761822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = 7.573810 kcal Electronic energy + Delta-G solvation = -20987.234275 eV Core-core repulsion = 17524.564585 eV Total energy + Delta-G solvation = -3462.669691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78535 -39.27390 -37.29365 -36.38665 -35.96211 -32.99022 -32.71873 -30.24263 -29.24646 -26.94739 -25.74248 -25.38443 -23.28268 -21.94404 -21.37058 -19.56757 -18.44398 -16.80213 -16.50702 -16.27160 -15.65284 -15.27047 -15.00279 -14.44482 -14.35735 -14.16865 -13.89788 -13.58695 -13.46983 -13.04853 -12.73916 -12.44467 -12.26208 -12.13822 -11.78911 -11.38494 -11.35144 -11.15449 -10.96277 -10.68377 -10.52408 -10.46538 -10.34308 -10.07738 -9.86968 -9.34061 -9.31457 -8.49785 -8.29193 -8.08867 -6.08772 -4.10861 0.71946 0.94955 1.90191 2.28787 3.02563 3.30856 3.34791 3.37425 3.37837 4.18736 4.37066 4.37960 4.53914 4.69908 4.72691 4.79189 4.87808 5.01882 5.09701 5.26499 5.31007 5.47512 5.56875 5.80076 5.84871 5.88032 5.93148 6.00019 6.14661 6.18979 6.30589 6.41125 7.07045 7.26494 7.53497 7.74095 7.99995 8.34389 8.95701 9.53521 11.02249 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002914 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.740640 B = 9606.884493 C =10428.723911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.460 5.460 11 C -0.003 4.003 12 C 0.039 3.961 13 O -0.292 6.292 14 C 0.167 3.833 15 C -0.198 4.198 16 C -0.058 4.058 17 C -0.080 4.080 18 Cl -0.074 7.074 19 C -0.052 4.052 20 C -0.136 4.136 21 C 0.019 3.981 22 Cl -0.174 7.174 23 C 0.005 3.995 24 H 0.263 0.737 25 H 0.032 0.968 26 H 0.007 0.993 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -21.858 -6.807 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.036 3.964 10 N -0.184 5.184 11 C -0.132 4.132 12 C -0.017 4.017 13 O -0.204 6.204 14 C 0.120 3.880 15 C -0.217 4.217 16 C -0.076 4.076 17 C -0.107 4.107 18 Cl -0.045 7.045 19 C -0.071 4.071 20 C -0.138 4.138 21 C -0.043 4.043 22 Cl -0.147 7.147 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.025 0.975 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.535 -21.457 -6.531 23.101 hybrid contribution -0.028 0.844 -0.594 1.033 sum 5.507 -20.612 -7.126 22.494 Atomic orbital electron populations 1.69938 1.06086 1.27089 1.50674 1.25003 0.94906 0.99441 0.95273 0.86514 0.79423 0.82508 0.78714 1.21284 1.20107 1.20197 1.21021 0.93560 0.89645 1.50508 0.91846 1.20286 0.90465 0.88635 0.97018 1.69050 1.33843 1.01443 1.14102 1.24285 1.03076 0.91246 0.94590 1.24660 0.97644 0.87685 0.91748 1.86228 1.35572 1.42382 1.56173 1.18918 0.89810 0.88288 0.90991 1.21329 0.92425 1.02662 1.05242 1.20904 1.00608 0.92108 0.94022 1.20646 0.91396 0.96009 1.02645 1.98360 1.70030 1.58820 1.77329 1.20701 0.91259 0.98078 0.97102 1.18959 0.95001 0.96993 1.02820 1.22901 0.91344 0.98052 0.92039 1.98746 1.90500 1.75762 1.49732 1.24032 0.98032 0.92680 0.97662 0.92734 0.95030 0.97496 0.90492 0.89996 0.87278 0.83643 0.84501 0.84275 0.88095 0.87306 0.89597 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.27 9.39 -34.44 -0.32 -14.59 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.16 4.12 4.57 -4.98 -0.02 4.10 16 10 N -0.46 -9.49 6.32 -246.13 -1.55 -11.05 16 11 C 0.00 -0.05 7.56 -7.56 -0.06 -0.11 16 12 C 0.04 0.55 4.00 -26.20 -0.10 0.45 16 13 O -0.29 -4.00 9.24 -19.52 -0.18 -4.18 16 14 C 0.17 2.00 6.65 -39.22 -0.26 1.74 16 15 C -0.20 -2.12 9.02 -39.44 -0.36 -2.47 16 16 C -0.06 -0.55 9.82 -39.57 -0.39 -0.94 16 17 C -0.08 -0.78 6.32 -39.49 -0.25 -1.03 16 18 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 19 C -0.05 -0.50 9.48 -39.57 -0.38 -0.87 16 20 C -0.14 -1.44 5.27 -104.48 -0.55 -1.99 16 21 C 0.02 0.18 6.56 36.00 0.24 0.42 16 22 Cl -0.17 -2.10 29.13 -51.86 -1.51 -3.61 16 23 C 0.01 0.08 7.52 -7.55 -0.06 0.03 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 27 H 0.08 1.48 7.42 -51.93 -0.39 1.10 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.11 1.33 6.00 -51.93 -0.31 1.02 16 30 H 0.15 1.44 5.93 -52.49 -0.31 1.13 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.11 1.06 7.53 -51.93 -0.39 0.67 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -30.02 336.17 -10.84 -40.86 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.26 Total: -1.86 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.61 Total: -13.80 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.82 Total: -36.84 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.18 Total: -4.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -3.01 Total: -5.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.02 -10.84 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223761822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds