Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48494 * 109.47056 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46962 * 120.00235 * 3 2 1 6 6 H 1.48502 * 109.46908 * 240.00226 * 3 2 1 7 7 C 1.37875 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99759 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.47474 * 111.00171 * 265.97366 * 10 9 7 12 12 C 1.53508 * 87.93468 * 221.29189 * 11 10 9 13 13 O 1.42904 * 114.34521 * 139.67798 * 12 11 10 14 14 C 1.35929 * 116.99431 * 107.84597 * 13 12 11 15 15 C 1.38743 * 120.04395 * 353.94535 * 14 13 12 16 16 C 1.38117 * 119.95353 * 179.76950 * 15 14 13 17 17 C 1.38390 * 120.04610 * 0.50712 * 16 15 14 18 18 Cl 1.73595 * 119.95898 * 179.76505 * 17 16 15 19 19 C 1.38348 * 120.08211 * 359.74409 * 17 16 15 20 20 C 1.38164 * 120.04327 * 0.02562 * 19 17 16 21 21 C 1.50697 * 120.02102 * 179.97438 * 20 19 17 22 22 Cl 1.80299 * 109.47079 * 270.01724 * 21 20 19 23 23 C 1.47478 * 111.00353 * 169.99889 * 10 9 7 24 24 H 0.96991 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47624 * 300.00099 * 9 7 2 26 26 H 1.09004 * 109.47224 * 59.99978 * 9 7 2 27 27 H 1.09005 * 113.47823 * 336.05801 * 11 10 9 28 28 H 1.09004 * 113.48123 * 106.52566 * 11 10 9 29 29 H 1.09002 * 114.17564 * 272.37980 * 12 11 10 30 30 H 1.07999 * 120.01913 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.97727 * 180.22581 * 16 15 14 32 32 H 1.07995 * 119.97739 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47376 * 30.01427 * 21 20 19 34 34 H 1.09002 * 109.47186 * 150.01964 * 21 20 19 35 35 H 1.08995 * 113.47489 * 253.47093 * 23 10 9 36 36 H 1.08996 * 113.47407 * 23.87509 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.4758 -4.0802 -1.3739 12 6 2.4194 -5.5181 -0.8392 13 8 1.7504 -6.4412 -1.7009 14 6 2.5247 -7.3472 -2.3546 15 6 3.9073 -7.2691 -2.2697 16 6 4.6921 -8.1935 -2.9308 17 6 4.1006 -9.1910 -3.6860 18 17 5.0893 -10.3480 -4.5209 19 6 2.7221 -9.2673 -3.7761 20 6 1.9335 -8.3473 -3.1123 21 6 0.4321 -8.4306 -3.2113 22 17 -0.1330 -7.4511 -4.6155 23 6 1.5187 -4.8985 0.2386 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5571 0.8897 26 1 0.6241 -2.5567 -0.8903 27 1 1.6758 -3.8466 -2.0765 28 1 3.4600 -3.7929 -1.7440 29 1 3.3718 -5.8924 -0.4638 30 1 4.3694 -6.4884 -1.6837 31 1 5.7684 -8.1352 -2.8620 32 1 2.2623 -10.0466 -4.3655 33 1 0.1342 -9.4699 -3.3499 34 1 -0.0144 -8.0438 -2.2953 35 1 1.6918 -5.3046 1.2351 36 1 0.4631 -4.8828 -0.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223761822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = -10.637935 kcal Electronic energy + Delta-G solvation = -20988.023996 eV Core-core repulsion = 17524.564585 eV Total energy + Delta-G solvation = -3463.459411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85847 -40.43830 -38.28989 -37.23884 -36.80295 -35.04227 -33.56379 -31.45022 -30.67715 -27.76576 -27.37798 -26.86958 -24.58915 -22.90366 -22.73643 -20.89101 -19.44342 -18.56063 -17.63665 -17.30633 -16.87009 -16.57040 -16.36279 -15.77054 -15.50772 -15.35824 -14.70130 -14.69199 -14.41507 -14.21970 -14.00895 -13.90399 -13.73790 -13.27859 -13.17392 -12.88701 -12.54006 -12.43338 -12.25597 -12.09195 -11.94642 -11.72277 -11.44743 -11.32681 -11.28073 -11.19298 -10.63498 -10.09610 -9.82505 -9.15866 -8.24925 -6.35753 -0.06475 0.13905 1.15297 1.39795 1.43026 1.50061 1.51152 1.97973 2.38658 2.57453 3.07409 3.21170 3.32515 3.42996 3.61906 3.80534 3.93371 4.02080 4.11990 4.31040 4.32783 4.43790 4.58211 4.58299 4.64789 4.73115 4.78505 4.84532 4.97956 5.05183 5.13594 5.16957 5.48763 5.52403 5.70410 6.00428 6.26738 6.34000 6.77964 7.33972 8.86247 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002914 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.740640 B = 9606.884493 C =10428.723911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.177 3.823 10 N -0.473 5.473 11 C -0.010 4.010 12 C 0.073 3.927 13 O -0.303 6.303 14 C 0.143 3.857 15 C -0.201 4.201 16 C -0.057 4.057 17 C -0.083 4.083 18 Cl -0.066 7.066 19 C -0.050 4.050 20 C -0.140 4.140 21 C 0.022 3.978 22 Cl -0.199 7.199 23 C 0.001 3.999 24 H 0.266 0.734 25 H 0.006 0.994 26 H -0.021 1.021 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -23.149 -7.075 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.050 3.950 10 N -0.197 5.197 11 C -0.139 4.139 12 C 0.016 3.984 13 O -0.215 6.215 14 C 0.096 3.904 15 C -0.220 4.220 16 C -0.076 4.076 17 C -0.110 4.110 18 Cl -0.037 7.037 19 C -0.069 4.069 20 C -0.141 4.141 21 C -0.040 4.040 22 Cl -0.173 7.173 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.024 0.976 26 H -0.003 1.003 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.374 -22.778 -6.805 24.890 hybrid contribution -0.562 1.085 -0.559 1.343 sum 6.812 -21.693 -7.364 23.900 Atomic orbital electron populations 1.70067 1.07751 1.28155 1.51452 1.25950 0.95792 1.03355 0.94607 0.85407 0.78169 0.77691 0.79209 1.20739 1.19095 1.19256 1.21386 0.93707 0.91048 1.50546 0.91950 1.19921 0.90508 0.90192 0.94369 1.68910 1.32895 1.01739 1.16200 1.24295 1.02608 0.94139 0.92849 1.24267 0.97865 0.86225 0.90035 1.86196 1.35989 1.42747 1.56592 1.19173 0.90434 0.88680 0.92072 1.21443 0.91950 1.03109 1.05465 1.21132 1.01588 0.91534 0.93343 1.20816 0.91726 0.96064 1.02372 1.98369 1.69795 1.58468 1.77117 1.20926 0.91231 0.98089 0.96650 1.19100 0.95539 0.96847 1.02619 1.23092 0.90862 0.99207 0.90799 1.98746 1.90753 1.76672 1.51103 1.24078 0.97720 0.91032 0.99938 0.92545 0.97623 1.00312 0.92784 0.89038 0.84360 0.82902 0.82588 0.82286 0.84996 0.87760 0.87355 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.53 -30.27 9.39 25.60 0.24 -30.03 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.18 9.41 4.57 85.56 0.39 9.80 16 10 N -0.47 -19.84 6.32 -933.02 -5.89 -25.74 16 11 C -0.01 -0.34 7.56 83.57 0.63 0.29 16 12 C 0.07 1.99 4.00 30.94 0.12 2.11 16 13 O -0.30 -8.06 9.24 -92.74 -0.86 -8.92 16 14 C 0.14 3.20 6.65 22.50 0.15 3.35 16 15 C -0.20 -3.86 9.02 22.36 0.20 -3.66 16 16 C -0.06 -0.95 9.82 22.28 0.22 -0.74 16 17 C -0.08 -1.41 6.32 22.33 0.14 -1.26 16 18 Cl -0.07 -1.03 28.95 -2.72 -0.08 -1.11 16 19 C -0.05 -0.83 9.48 22.28 0.21 -0.61 16 20 C -0.14 -2.70 5.27 -19.77 -0.10 -2.81 16 21 C 0.02 0.39 6.56 71.24 0.47 0.86 16 22 Cl -0.20 -4.70 29.13 -2.72 -0.08 -4.78 16 23 C 0.00 0.04 7.52 83.57 0.63 0.67 16 24 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.01 0.32 8.08 -2.39 -0.02 0.31 16 26 H -0.02 -1.20 7.30 -2.39 -0.02 -1.22 16 27 H 0.05 2.18 7.42 -2.38 -0.02 2.17 16 28 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 29 H 0.14 3.02 6.00 -2.39 -0.01 3.00 16 30 H 0.15 2.63 5.93 -2.91 -0.02 2.61 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 1.46 8.09 -2.39 -0.02 1.44 16 34 H 0.10 1.95 7.53 -2.39 -0.02 1.93 16 35 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 2.22 7.91 -2.39 -0.02 2.20 16 Total: -1.00 -65.86 336.17 0.27 -65.59 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.10 Total: 6.28 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.76 Total: -21.50 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -5.61 Total: -81.93 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.86 Total: -8.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -5.74 SS G_CDS: -0.16 Total: -5.89 kcal Total: -65.86 0.27 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223761822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.954 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds