Wall clock time and date at job start Tue Mar 31 2020 11:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08995 * 111.00824 * 82.59982 * 12 11 10 14 14 O 1.42894 * 111.00580 * 206.42471 * 12 11 10 15 15 C 1.42901 * 114.00255 * 210.00066 * 14 12 11 16 16 H 1.08995 * 109.47229 * 59.98888 * 15 14 12 17 17 Cl 1.80300 * 109.46802 * 299.99454 * 15 14 12 18 18 C 1.50703 * 109.47304 * 179.97438 * 15 14 12 19 19 C 1.38262 * 119.99159 * 149.99933 * 18 15 14 20 20 C 1.38218 * 120.02604 * 180.02562 * 19 18 15 21 21 C 1.38237 * 120.01311 * 359.97438 * 20 19 18 22 22 C 1.38332 * 119.98727 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01362 * 179.97438 * 22 21 20 24 24 C 1.38181 * 119.99170 * 329.72455 * 18 15 14 25 25 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 28 28 H 1.09005 * 109.87708 * 61.44927 * 10 9 7 29 29 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 30 30 H 1.08993 * 110.72111 * 263.83180 * 11 10 9 31 31 H 1.08003 * 119.98492 * 359.97438 * 19 18 15 32 32 H 1.07996 * 119.99492 * 180.02562 * 20 19 18 33 33 H 1.07992 * 120.00465 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.01335 * 0.02562 * 24 18 15 35 35 H 1.08999 * 110.36600 * 274.74731 * 25 9 7 36 36 H 1.09003 * 110.36161 * 37.06348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.8559 -4.6059 1.6810 14 8 1.0245 -6.0063 0.1476 15 6 1.7237 -6.8393 1.0746 16 1 1.1730 -6.8790 2.0144 17 17 3.3680 -6.1613 1.3699 18 6 1.8477 -8.2295 0.5063 19 6 2.9322 -9.0189 0.8413 20 6 3.0469 -10.2939 0.3201 21 6 2.0770 -10.7807 -0.5362 22 6 0.9917 -9.9914 -0.8718 23 17 -0.2264 -10.6018 -1.9475 24 6 0.8746 -8.7170 -0.3450 25 6 1.9333 -3.7311 -0.0198 26 1 -0.4850 0.8401 0.0004 27 1 -0.5579 -2.0568 0.8780 28 1 -0.5544 -2.0771 -0.9063 29 1 -1.2989 -4.2550 0.6592 30 1 -0.6315 -4.4127 -0.9988 31 1 3.6905 -8.6388 1.5099 32 1 3.8941 -10.9102 0.5824 33 1 2.1670 -11.7767 -0.9437 34 1 0.0253 -8.1018 -0.6035 35 1 2.1623 -4.0340 -1.0415 36 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224098682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:38 Heat of formation + Delta-G solvation = -4.918623 kcal Electronic energy + Delta-G solvation = -21278.163001 eV Core-core repulsion = 17814.951598 eV Total energy + Delta-G solvation = -3463.211403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.85190 -38.48017 -36.78601 -36.24901 -35.45542 -32.54555 -31.73228 -31.02493 -29.21450 -27.32139 -26.01504 -24.31330 -22.97156 -21.75362 -20.48095 -20.11741 -17.65420 -17.12450 -16.78898 -16.00533 -15.84860 -15.26572 -14.84177 -14.56037 -14.11131 -13.88703 -13.70195 -13.49292 -12.81369 -12.44592 -12.20552 -11.94150 -11.91067 -11.76602 -11.61719 -11.41620 -11.18482 -10.98648 -10.83055 -10.64667 -10.46345 -10.24545 -10.12253 -9.84971 -9.70787 -9.46225 -9.23875 -8.98602 -8.59215 -6.83258 -5.70601 -3.04207 0.74642 0.93273 1.82052 2.11625 3.19301 3.42154 3.45178 3.46814 3.49568 4.23087 4.51541 4.56384 4.74881 4.77530 4.94816 5.10393 5.27598 5.33741 5.35678 5.53154 5.55021 5.67668 5.77102 5.87881 5.98834 6.06872 6.15408 6.41017 6.43198 6.47911 6.61545 6.73632 7.25241 7.54982 7.58098 7.81176 8.25615 9.22280 9.82361 10.47517 11.41281 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003136 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.180583 B = 8925.182177 C = 9789.210950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.066 3.934 13 H 0.075 0.925 14 O -0.350 6.350 15 C 0.211 3.789 16 H 0.109 0.891 17 Cl -0.185 7.185 18 C -0.086 4.086 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.103 4.103 22 C -0.039 4.039 23 Cl -0.068 7.068 24 C -0.073 4.073 25 C 0.126 3.874 26 H 0.253 0.747 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.027 0.973 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -22.925 2.206 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.177 4.177 12 C 0.009 3.991 13 H 0.093 0.907 14 O -0.268 6.268 15 C 0.127 3.873 16 H 0.127 0.873 17 Cl -0.160 7.160 18 C -0.087 4.087 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.066 4.066 23 Cl -0.039 7.039 24 C -0.092 4.092 25 C -0.001 4.001 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.045 0.955 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.882 -22.741 1.947 22.902 hybrid contribution 0.467 0.962 0.067 1.071 sum 2.350 -21.779 2.014 21.998 Atomic orbital electron populations 1.69933 1.04879 1.25179 1.57155 1.24800 0.95739 0.97652 1.02237 0.86179 0.78443 0.83098 0.77934 1.21144 1.21590 1.21153 1.19018 0.90458 0.82238 1.43789 0.90421 1.44371 1.01638 0.99843 1.87396 1.21173 0.84617 0.87295 1.01554 1.23052 0.94817 0.99114 1.00710 1.23741 0.98503 0.78635 0.98255 0.90712 1.88024 1.72206 1.22547 1.44050 1.23814 0.81801 0.87282 0.94442 0.87327 1.98775 1.33632 1.87114 1.96455 1.19474 0.96094 0.93547 0.99555 1.21251 0.96723 0.93786 0.99222 1.21074 0.98884 0.95676 0.97195 1.21141 0.92935 0.99991 0.98108 1.20874 0.92919 0.95129 0.97657 1.98380 1.54578 1.87484 1.63485 1.20902 0.99770 0.93550 0.94950 1.22005 0.94322 0.85843 0.97900 0.93679 0.93268 0.93416 0.91663 0.91282 0.84389 0.84620 0.84800 0.83727 0.95539 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.73 3.39 -169.92 -0.58 -16.31 16 10 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16 11 C -0.14 -2.60 6.68 -24.90 -0.17 -2.77 16 12 C 0.07 1.18 3.08 -24.46 -0.08 1.10 16 13 H 0.07 1.28 7.83 -51.93 -0.41 0.87 16 14 O -0.35 -5.44 9.02 -35.23 -0.32 -5.76 16 15 C 0.21 2.67 3.58 36.01 0.13 2.80 16 16 H 0.11 1.17 8.12 -51.93 -0.42 0.74 16 17 Cl -0.19 -2.56 24.63 -51.86 -1.28 -3.84 16 18 C -0.09 -0.98 5.63 -104.63 -0.59 -1.57 16 19 C -0.09 -0.89 9.15 -39.58 -0.36 -1.25 16 20 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 21 C -0.10 -0.89 9.83 -39.55 -0.39 -1.28 16 22 C -0.04 -0.40 6.32 -39.49 -0.25 -0.65 16 23 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 24 C -0.07 -0.83 9.13 -39.55 -0.36 -1.19 16 25 C 0.13 2.71 6.28 -2.41 -0.02 2.70 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.05 1.30 7.39 -51.93 -0.38 0.91 16 28 H 0.05 1.28 7.49 -51.93 -0.39 0.89 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.14 1.22 6.83 -52.48 -0.36 0.86 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.70 7.49 -52.48 -0.39 1.31 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 1.05 6.92 -51.93 -0.36 0.69 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -30.45 326.81 -10.31 -40.77 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.37 Total: -2.29 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.74 Total: -5.98 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.00 Total: -42.90 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.32 Total: -5.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -2.78 Total: -6.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.45 -10.31 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224098682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.850 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds