Wall clock time and date at job start Tue Mar 31 2020 11:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08995 * 111.00824 * 82.59982 * 12 11 10 14 14 O 1.42894 * 111.00580 * 206.42471 * 12 11 10 15 15 C 1.42901 * 114.00255 * 210.00066 * 14 12 11 16 16 H 1.08995 * 109.47229 * 59.98888 * 15 14 12 17 17 Cl 1.80300 * 109.46802 * 299.99454 * 15 14 12 18 18 C 1.50703 * 109.47304 * 179.97438 * 15 14 12 19 19 C 1.38262 * 119.99159 * 149.99933 * 18 15 14 20 20 C 1.38218 * 120.02604 * 180.02562 * 19 18 15 21 21 C 1.38237 * 120.01311 * 359.97438 * 20 19 18 22 22 C 1.38332 * 119.98727 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01362 * 179.97438 * 22 21 20 24 24 C 1.38181 * 119.99170 * 329.72455 * 18 15 14 25 25 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 28 28 H 1.09005 * 109.87708 * 61.44927 * 10 9 7 29 29 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 30 30 H 1.08993 * 110.72111 * 263.83180 * 11 10 9 31 31 H 1.08003 * 119.98492 * 359.97438 * 19 18 15 32 32 H 1.07996 * 119.99492 * 180.02562 * 20 19 18 33 33 H 1.07992 * 120.00465 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.01335 * 0.02562 * 24 18 15 35 35 H 1.08999 * 110.36600 * 274.74731 * 25 9 7 36 36 H 1.09003 * 110.36161 * 37.06348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.8559 -4.6059 1.6810 14 8 1.0245 -6.0063 0.1476 15 6 1.7237 -6.8393 1.0746 16 1 1.1730 -6.8790 2.0144 17 17 3.3680 -6.1613 1.3699 18 6 1.8477 -8.2295 0.5063 19 6 2.9322 -9.0189 0.8413 20 6 3.0469 -10.2939 0.3201 21 6 2.0770 -10.7807 -0.5362 22 6 0.9917 -9.9914 -0.8718 23 17 -0.2264 -10.6018 -1.9475 24 6 0.8746 -8.7170 -0.3450 25 6 1.9333 -3.7311 -0.0198 26 1 -0.4850 0.8401 0.0004 27 1 -0.5579 -2.0568 0.8780 28 1 -0.5544 -2.0771 -0.9063 29 1 -1.2989 -4.2550 0.6592 30 1 -0.6315 -4.4127 -0.9988 31 1 3.6905 -8.6388 1.5099 32 1 3.8941 -10.9102 0.5824 33 1 2.1670 -11.7767 -0.9437 34 1 0.0253 -8.1018 -0.6035 35 1 2.1623 -4.0340 -1.0415 36 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224098682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:38 Heat of formation + Delta-G solvation = -21.085999 kcal Electronic energy + Delta-G solvation = -21278.864071 eV Core-core repulsion = 17814.951598 eV Total energy + Delta-G solvation = -3463.912473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.73049 -39.79523 -37.93498 -37.36115 -36.64155 -34.30133 -32.85117 -31.75912 -31.07477 -28.98019 -27.16952 -26.17602 -23.73688 -22.59111 -22.14517 -21.88498 -19.03312 -18.53144 -18.05638 -17.07716 -16.76492 -16.64896 -16.23138 -15.99558 -15.47934 -15.06294 -14.75248 -14.56129 -14.24785 -14.04378 -13.85604 -13.44341 -13.06372 -12.91626 -12.70981 -12.64669 -12.54960 -12.39355 -12.12886 -12.08317 -11.98513 -11.89174 -11.71394 -11.50489 -11.39306 -10.89087 -10.70884 -10.00227 -9.73692 -8.92814 -7.86146 -5.22573 -0.01651 0.19093 0.97984 1.20507 1.46049 1.49497 1.55769 2.12747 2.50348 2.62174 3.30091 3.33035 3.67205 3.78234 3.83035 3.91491 4.01767 4.09863 4.11259 4.22457 4.37556 4.51883 4.60204 4.74810 4.85671 4.90856 4.97170 5.02394 5.16638 5.29038 5.36504 5.42780 5.61022 5.70487 5.72849 5.89622 6.18660 7.08492 7.74246 8.38217 9.24014 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003136 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.180583 B = 8925.182177 C = 9789.210950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.125 4.125 12 C 0.088 3.912 13 H 0.088 0.912 14 O -0.354 6.354 15 C 0.209 3.791 16 H 0.132 0.868 17 Cl -0.196 7.196 18 C -0.100 4.100 19 C -0.095 4.095 20 C -0.102 4.102 21 C -0.099 4.099 22 C -0.050 4.050 23 Cl -0.070 7.070 24 C -0.088 4.088 25 C 0.125 3.875 26 H 0.249 0.751 27 H 0.022 0.978 28 H 0.011 0.989 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.015 0.985 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -24.881 2.821 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.163 4.163 12 C 0.030 3.970 13 H 0.106 0.894 14 O -0.272 6.272 15 C 0.126 3.874 16 H 0.149 0.851 17 Cl -0.171 7.171 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.076 4.076 23 Cl -0.042 7.042 24 C -0.107 4.107 25 C -0.001 4.001 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.152 0.848 35 H 0.033 0.967 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.973 -24.736 2.562 25.046 hybrid contribution 0.182 1.454 -0.154 1.473 sum 3.155 -23.282 2.408 23.618 Atomic orbital electron populations 1.70151 1.06214 1.25503 1.57964 1.25650 0.96671 1.00944 1.02302 0.85141 0.77187 0.78689 0.78246 1.20472 1.21785 1.20123 1.19393 0.90953 0.83605 1.43565 0.90229 1.44674 1.02569 1.00918 1.87226 1.20934 0.83767 0.90824 0.98460 1.22869 0.96437 0.94979 1.02017 1.23316 0.95989 0.79316 0.98415 0.89429 1.88018 1.72739 1.21319 1.45079 1.24164 0.80970 0.87232 0.95069 0.85066 1.98775 1.34519 1.87323 1.96450 1.19426 0.97108 0.92976 1.00552 1.21422 0.96195 0.94339 0.99309 1.21449 0.99397 0.95193 0.95912 1.21474 0.92056 1.00717 0.97498 1.21008 0.93577 0.95135 0.97909 1.98378 1.54835 1.87389 1.63559 1.20864 0.99833 0.94203 0.95765 1.22095 0.95561 0.84864 0.97560 0.94223 0.96015 0.97056 0.88659 0.90745 0.83655 0.81394 0.82498 0.84766 0.96673 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 10.31 21.65 0.22 -57.15 16 2 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 3 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -14.18 10.28 84.04 0.86 -13.31 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.18 3.39 -691.51 -2.35 -35.53 16 10 C 0.19 9.23 5.38 86.73 0.47 9.70 16 11 C -0.12 -4.59 6.68 31.78 0.21 -4.38 16 12 C 0.09 3.02 3.08 32.06 0.10 3.12 16 13 H 0.09 2.83 7.83 -2.39 -0.02 2.81 16 14 O -0.35 -10.49 9.02 -148.98 -1.34 -11.83 16 15 C 0.21 4.93 3.58 71.24 0.26 5.18 16 16 H 0.13 2.50 8.12 -2.39 -0.02 2.48 16 17 Cl -0.20 -5.15 24.63 -2.72 -0.07 -5.21 16 18 C -0.10 -2.10 5.63 -19.87 -0.11 -2.21 16 19 C -0.09 -1.59 9.15 22.27 0.20 -1.39 16 20 C -0.10 -1.31 10.05 22.26 0.22 -1.08 16 21 C -0.10 -1.42 9.83 22.29 0.22 -1.20 16 22 C -0.05 -0.94 6.32 22.33 0.14 -0.80 16 23 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.40 16 24 C -0.09 -1.89 9.13 22.29 0.20 -1.69 16 25 C 0.12 5.38 6.28 86.93 0.55 5.93 16 26 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 27 H 0.02 1.18 7.39 -2.39 -0.02 1.16 16 28 H 0.01 0.63 7.49 -2.38 -0.02 0.61 16 29 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.15 2.20 6.83 -2.91 -0.02 2.18 16 32 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.13 3.09 7.49 -2.91 -0.02 3.07 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 2.16 6.92 -2.39 -0.02 2.14 16 Total: -1.00 -66.88 326.81 3.29 -63.59 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.09 Total: 4.53 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 3.79 Total: -5.27 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.12 Total: -92.67 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.34 Total: -11.83 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 17 Polarization: -6.47 SS G_CDS: -0.15 Total: -6.61 kcal Total: -66.88 3.29 -63.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224098682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.501 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds