Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 13 13 H 1.09006 * 111.03574 * 277.21639 * 12 11 10 14 14 O 1.42895 * 111.00660 * 153.37900 * 12 11 10 15 15 C 1.42895 * 114.00333 * 156.34703 * 14 12 11 16 16 H 1.09002 * 109.47191 * 60.00050 * 15 14 12 17 17 Cl 1.80299 * 109.47276 * 299.99914 * 15 14 12 18 18 C 1.50703 * 109.47151 * 180.02562 * 15 14 12 19 19 C 1.38259 * 119.99321 * 329.71842 * 18 15 14 20 20 C 1.38225 * 120.02542 * 179.77093 * 19 18 15 21 21 C 1.38226 * 120.01417 * 0.51095 * 20 19 18 22 22 C 1.38338 * 119.98936 * 359.74662 * 21 20 19 23 23 Cl 1.73595 * 120.01732 * 179.97438 * 22 21 20 24 24 C 1.38190 * 119.99445 * 150.00373 * 18 15 14 25 25 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 26 26 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 28 28 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 29 29 H 1.08998 * 110.84923 * 219.67449 * 11 10 9 30 30 H 1.09006 * 110.66068 * 96.52705 * 11 10 9 31 31 H 1.08000 * 119.98943 * 0.02562 * 19 18 15 32 32 H 1.07999 * 119.98884 * 180.28004 * 20 19 18 33 33 H 1.08001 * 120.01161 * 179.73011 * 21 20 19 34 34 H 1.08005 * 120.00705 * 359.97438 * 24 18 15 35 35 H 1.09003 * 110.36883 * 322.92426 * 25 9 7 36 36 H 1.09002 * 110.37021 * 85.24693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 6 0.9858 -4.6447 -0.8634 13 1 1.2197 -4.5796 -1.9261 14 8 1.0552 -5.9974 -0.4084 15 6 2.0341 -6.7887 -1.0847 16 1 3.0208 -6.3492 -0.9386 17 17 1.6536 -6.8390 -2.8464 18 6 2.0200 -8.1892 -0.5282 19 6 1.6714 -8.4046 0.7923 20 6 1.6536 -9.6893 1.3022 21 6 1.9946 -10.7583 0.4950 22 6 2.3487 -10.5429 -0.8249 23 17 2.7777 -11.8849 -1.8390 24 6 2.3612 -9.2571 -1.3361 25 6 1.9203 -3.7306 -0.0323 26 1 -0.4849 0.8401 0.0004 27 1 -0.6897 -2.0733 0.3473 28 1 -0.3254 -2.0274 -1.4002 29 1 -1.1007 -4.2245 -1.3754 30 1 -0.7986 -4.4069 0.3822 31 1 1.4089 -7.5693 1.4245 32 1 1.3769 -9.8573 2.3325 33 1 1.9849 -11.7616 0.8946 34 1 2.6375 -9.0883 -2.3665 35 1 2.9289 -3.7432 -0.4456 36 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224098685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = -7.014460 kcal Electronic energy + Delta-G solvation = -21161.390424 eV Core-core repulsion = 17698.088138 eV Total energy + Delta-G solvation = -3463.302285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86200 -38.52592 -36.82448 -36.31777 -35.49274 -32.56929 -31.82413 -30.98088 -29.26278 -27.35942 -26.10949 -24.32392 -22.99298 -21.74646 -20.47210 -20.15455 -17.69732 -17.24869 -16.78384 -16.13680 -15.82039 -15.05076 -14.80325 -14.66375 -14.22409 -14.05666 -13.72718 -13.50669 -12.78842 -12.49673 -12.33943 -11.96369 -11.91937 -11.82061 -11.70428 -11.26512 -11.19534 -11.00760 -10.87377 -10.82392 -10.59198 -10.33165 -10.15370 -9.83059 -9.80800 -9.49982 -9.22453 -8.98476 -8.65901 -6.89043 -5.75068 -3.11874 0.75884 0.91304 1.81338 2.01192 3.20412 3.38259 3.42578 3.44715 3.47902 4.24117 4.46724 4.55403 4.75370 4.78675 4.99510 5.09743 5.27092 5.32510 5.35733 5.47995 5.52446 5.66587 5.72250 5.86021 6.04003 6.04842 6.17713 6.33496 6.43460 6.44429 6.52447 6.56000 7.19875 7.42790 7.60308 7.76278 8.20647 9.15329 9.76060 10.40894 11.35116 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.030917 B = 0.002768 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.430357 B =10113.886399 C =10340.538202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.174 3.826 11 C -0.133 4.133 12 C 0.060 3.940 13 H 0.085 0.915 14 O -0.348 6.348 15 C 0.212 3.788 16 H 0.113 0.887 17 Cl -0.193 7.193 18 C -0.086 4.086 19 C -0.076 4.076 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.039 4.039 23 Cl -0.070 7.070 24 C -0.088 4.088 25 C 0.118 3.882 26 H 0.254 0.746 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.039 0.961 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -21.955 -0.669 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.049 3.951 11 C -0.171 4.171 12 C 0.002 3.998 13 H 0.103 0.897 14 O -0.266 6.266 15 C 0.128 3.872 16 H 0.130 0.870 17 Cl -0.167 7.167 18 C -0.087 4.087 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.065 4.065 23 Cl -0.041 7.041 24 C -0.107 4.107 25 C -0.009 4.009 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.057 0.943 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.386 -21.902 -0.724 22.174 hybrid contribution 0.582 0.851 -0.389 1.102 sum 3.967 -21.050 -1.112 21.450 Atomic orbital electron populations 1.69941 1.04957 1.25250 1.56453 1.24828 0.95700 0.97794 1.01984 0.86120 0.78577 0.83241 0.77706 1.21486 1.20672 1.21639 1.19030 0.90907 0.82424 1.43644 0.90397 1.44320 1.05542 0.99540 1.83380 1.21245 0.85562 0.87784 1.00509 1.22961 0.94172 0.98559 1.01399 1.23801 0.99009 0.78187 0.98786 0.89709 1.88019 1.57281 1.23201 1.58058 1.23841 0.94432 0.90614 0.78290 0.87011 1.98755 1.95898 1.98384 1.23700 1.19450 1.02222 0.92358 0.94665 1.21185 0.95776 0.97940 0.94500 1.21155 0.99713 0.91760 1.00243 1.21149 0.98851 1.00311 0.91811 1.20786 1.04648 0.88729 0.92368 1.98373 1.91720 1.45450 1.68577 1.20979 0.98947 0.89985 1.00752 1.21912 0.95104 0.86951 0.96930 0.93613 0.91696 0.94749 0.91571 0.91284 0.83981 0.84527 0.84787 0.84033 0.94310 0.95450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.48 55.49 0.58 -26.15 16 2 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 3 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 9 N -0.60 -15.20 3.39 -170.06 -0.58 -15.77 16 10 C 0.17 4.17 5.43 -3.06 -0.02 4.15 16 11 C -0.13 -2.50 6.68 -24.89 -0.17 -2.67 16 12 C 0.06 1.05 3.28 -24.59 -0.08 0.97 16 13 H 0.09 1.50 6.59 -51.93 -0.34 1.16 16 14 O -0.35 -5.28 9.02 -35.23 -0.32 -5.60 16 15 C 0.21 2.71 3.74 36.01 0.13 2.85 16 16 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 17 Cl -0.19 -2.57 25.54 -51.86 -1.32 -3.90 16 18 C -0.09 -0.99 5.63 -104.63 -0.59 -1.57 16 19 C -0.08 -0.79 9.35 -39.58 -0.37 -1.16 16 20 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 21 C -0.10 -0.88 9.83 -39.55 -0.39 -1.27 16 22 C -0.04 -0.38 6.32 -39.49 -0.25 -0.63 16 23 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 24 C -0.09 -0.95 8.93 -39.55 -0.35 -1.30 16 25 C 0.12 2.40 6.97 -2.54 -0.02 2.39 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.73 6.99 -51.93 -0.36 1.37 16 28 H 0.03 0.89 7.92 -51.93 -0.41 0.48 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.14 1.49 7.49 -52.49 -0.39 1.10 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.48 6.83 -52.48 -0.36 1.12 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -29.62 328.99 -10.32 -39.95 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.37 Total: -1.74 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.74 Total: -6.44 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.00 Total: -41.93 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.32 Total: -5.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -2.83 Total: -6.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.62 -10.32 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224098685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.934 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds