Wall clock time and date at job start Tue Mar 31 2020 10:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48503 * 109.46733 * 239.99692 * 3 2 1 5 5 H 1.48500 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47420 * 119.99969 * 3 2 1 7 7 C 1.40063 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.40918 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.40913 * 119.67586 * 180.02562 * 9 7 2 11 11 C 1.36610 * 119.26780 * 180.02562 * 10 9 7 12 12 C 1.40354 * 118.60215 * 0.02562 * 11 10 9 13 13 C 1.47797 * 120.35466 * 179.97438 * 12 11 10 14 14 C 1.39901 * 120.13414 * 64.74214 * 13 12 11 15 15 F 1.35094 * 120.06657 * 0.02562 * 14 13 12 16 16 C 1.38254 * 119.85975 * 179.76444 * 14 13 12 17 17 F 1.35100 * 119.93444 * 180.23493 * 16 14 13 18 18 C 1.38771 * 120.14014 * 0.49514 * 16 14 13 19 19 F 1.35093 * 119.87068 * 179.74302 * 18 16 14 20 20 C 1.38772 * 120.26751 * 359.75899 * 18 16 14 21 21 F 1.35098 * 119.93672 * 179.97438 * 20 18 16 22 22 C 1.38263 * 120.13597 * 0.02562 * 20 18 16 23 23 F 1.35098 * 120.06718 * 179.97438 * 22 20 18 24 24 C 1.40185 * 119.29345 * 0.02562 * 12 11 10 25 25 N 1.31169 * 120.67715 * 359.97438 * 24 12 11 26 26 H 0.97001 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.08010 * 120.36969 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.69980 * 179.97438 * 11 10 9 29 29 H 1.08008 * 119.66134 * 179.72212 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0077 -1.2130 0.0005 8 1 3.0877 -1.2131 0.0010 9 6 1.3031 -2.4334 0.0016 10 6 2.0146 -3.6497 0.0027 11 6 1.3231 -4.8279 0.0032 12 6 -0.0797 -4.7837 0.0021 13 6 -0.8664 -6.0349 0.0021 14 6 -0.8041 -6.9038 1.0968 15 9 -0.0245 -6.6010 2.1577 16 6 -1.5461 -8.0703 1.0928 17 9 -1.4907 -8.9081 2.1512 18 6 -2.3436 -8.3851 0.0017 19 9 -3.0624 -9.5290 0.0014 20 6 -2.4055 -7.5299 -1.0894 21 9 -3.1838 -7.8432 -2.1483 22 6 -1.6716 -6.3582 -1.0955 23 9 -1.7325 -5.5268 -2.1586 24 6 -0.7268 -3.5401 0.0000 25 7 -0.0349 -2.4257 -0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 3.0947 -3.6506 0.0023 28 1 1.8449 -5.7735 0.0037 29 1 -1.8061 -3.4992 -0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241407839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:07 Heat of formation + Delta-G solvation = -160.684797 kcal Electronic energy + Delta-G solvation = -25170.908076 eV Core-core repulsion = 20473.888479 eV Total energy + Delta-G solvation = -4697.019597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.038 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98138 -49.63569 -49.12413 -48.61146 -48.32191 -38.90608 -37.83373 -34.07555 -31.96807 -30.78411 -30.01069 -29.04502 -26.02257 -23.44906 -23.33530 -22.00654 -21.07063 -18.86873 -18.72467 -18.12959 -17.77985 -17.22773 -16.65881 -16.44714 -15.97695 -15.89720 -15.75414 -15.50298 -15.08131 -14.91217 -14.88288 -14.49639 -14.44420 -14.30930 -14.23980 -13.01374 -12.92226 -12.63574 -12.39461 -12.10829 -11.88405 -11.43610 -11.31271 -11.26010 -11.07215 -10.73428 -10.25810 -9.65769 -9.02143 -8.81200 -8.52004 -7.87692 -7.75891 -6.71480 -4.84716 0.36451 0.38662 2.30590 2.75395 2.87898 2.90343 2.93169 2.94799 3.00011 3.61380 3.71835 3.74294 3.96385 4.21086 4.35876 4.46857 4.83891 5.29157 5.41349 5.68602 5.70460 5.76178 5.80367 5.96677 6.44576 6.49210 6.56367 6.79338 7.09528 7.24464 7.39435 7.72115 7.89662 8.31238 8.59669 9.80231 9.97542 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.003668 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.372343 B = 7631.434431 C = 8312.948276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.090 0.910 9 C 0.253 3.747 10 C -0.268 4.268 11 C -0.019 4.019 12 C -0.309 4.309 13 C 0.010 3.990 14 C 0.109 3.891 15 F -0.101 7.101 16 C 0.055 3.945 17 F -0.111 7.111 18 C 0.062 3.938 19 F -0.109 7.109 20 C 0.056 3.944 21 F -0.110 7.110 22 C 0.110 3.890 23 F -0.099 7.099 24 C 0.178 3.822 25 N -0.486 5.486 26 H 0.280 0.720 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -9.377 -0.029 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.167 4.167 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.427 4.427 8 H 0.108 0.892 9 C 0.131 3.869 10 C -0.290 4.290 11 C -0.042 4.042 12 C -0.315 4.315 13 C 0.007 3.993 14 C 0.087 3.913 15 F -0.079 7.079 16 C 0.033 3.967 17 F -0.089 7.089 18 C 0.040 3.960 19 F -0.088 7.088 20 C 0.034 3.966 21 F -0.089 7.089 22 C 0.088 3.912 23 F -0.077 7.077 24 C 0.007 3.993 25 N -0.197 5.197 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.336 -8.387 -0.032 9.026 hybrid contribution 0.560 -0.545 0.004 0.782 sum -2.776 -8.932 -0.028 9.354 Atomic orbital electron populations 1.70104 1.07434 1.28838 1.24902 1.26237 0.95086 1.01700 0.93723 0.86253 0.80120 0.79636 0.80235 1.18590 1.19868 1.18588 1.19818 0.94832 0.89564 1.38529 0.89162 1.18669 0.88496 0.92009 0.87703 1.21373 0.99025 0.93241 1.15355 1.20446 0.91944 0.97052 0.94731 1.18453 0.93068 0.90090 1.29927 1.18686 0.95718 0.95528 0.89404 1.17204 0.94462 0.93156 0.86439 1.91597 1.71248 1.92574 1.52447 1.17060 1.02309 0.90979 0.86336 1.91570 1.95145 1.69240 1.52972 1.16670 0.98764 0.86259 0.94305 1.91566 1.75236 1.45507 1.96443 1.17065 0.97944 0.95275 0.86327 1.91572 1.71813 1.92588 1.52900 1.17208 0.99557 0.88097 0.86303 1.91612 1.94549 1.69374 1.52184 1.22646 0.98536 0.87111 0.90980 1.68828 1.07116 1.25565 1.18186 0.90829 0.87702 0.88400 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.02 11.44 55.55 0.64 -16.39 15 2 C 0.06 1.42 5.50 -17.33 -0.10 1.32 15 3 Si 0.91 16.94 29.56 -169.99 -5.02 11.91 15 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.40 -9.72 9.11 -37.88 -0.35 -10.07 15 8 H 0.09 2.02 7.85 -52.48 -0.41 1.60 15 9 C 0.25 6.38 6.55 -84.98 -0.56 5.82 15 10 C -0.27 -6.01 9.76 -39.16 -0.38 -6.39 15 11 C -0.02 -0.38 9.65 -39.37 -0.38 -0.76 15 12 C -0.31 -6.29 4.74 -104.46 -0.49 -6.79 15 13 C 0.01 0.17 5.35 -104.74 -0.56 -0.39 15 14 C 0.11 1.70 7.25 -38.95 -0.28 1.41 15 15 F -0.10 -1.70 16.59 2.25 0.04 -1.66 15 16 C 0.05 0.77 7.30 -39.38 -0.29 0.48 15 17 F -0.11 -1.56 17.08 2.25 0.04 -1.53 15 18 C 0.06 0.84 7.31 -39.19 -0.29 0.55 15 19 F -0.11 -1.47 17.08 2.25 0.04 -1.43 15 20 C 0.06 0.79 7.30 -39.37 -0.29 0.50 15 21 F -0.11 -1.57 17.08 2.25 0.04 -1.53 15 22 C 0.11 1.72 7.25 -38.95 -0.28 1.44 15 23 F -0.10 -1.71 16.60 2.25 0.04 -1.67 15 24 C 0.18 4.00 10.75 -17.10 -0.18 3.81 15 25 N -0.49 -12.44 7.83 -10.83 -0.08 -12.53 15 26 H 0.28 6.19 8.29 -40.82 -0.34 5.85 15 27 H 0.10 2.14 8.06 -52.48 -0.42 1.72 15 28 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 29 H 0.12 2.47 8.06 -52.48 -0.42 2.05 15 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -25.13 292.72 -5.11 -30.24 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -0.81 Total: -0.77 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -4.42 Total: -9.05 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.55 Total: -28.92 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.19 Total: -7.82 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.02 Total: 11.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.13 -5.11 -30.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241407839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.445 kcal (2) G-P(sol) polarization free energy of solvation -25.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds