Wall clock time and date at job start Tue Mar 31 2020 10:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48503 * 109.46733 * 239.99692 * 3 2 1 5 5 H 1.48500 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47420 * 119.99969 * 3 2 1 7 7 C 1.40063 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.40918 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.40913 * 119.67586 * 180.02562 * 9 7 2 11 11 C 1.36610 * 119.26780 * 180.02562 * 10 9 7 12 12 C 1.40354 * 118.60215 * 0.02562 * 11 10 9 13 13 C 1.47797 * 120.35466 * 179.97438 * 12 11 10 14 14 C 1.39901 * 120.13414 * 64.74214 * 13 12 11 15 15 F 1.35094 * 120.06657 * 0.02562 * 14 13 12 16 16 C 1.38254 * 119.85975 * 179.76444 * 14 13 12 17 17 F 1.35100 * 119.93444 * 180.23493 * 16 14 13 18 18 C 1.38771 * 120.14014 * 0.49514 * 16 14 13 19 19 F 1.35093 * 119.87068 * 179.74302 * 18 16 14 20 20 C 1.38772 * 120.26751 * 359.75899 * 18 16 14 21 21 F 1.35098 * 119.93672 * 179.97438 * 20 18 16 22 22 C 1.38263 * 120.13597 * 0.02562 * 20 18 16 23 23 F 1.35098 * 120.06718 * 179.97438 * 22 20 18 24 24 C 1.40185 * 119.29345 * 0.02562 * 12 11 10 25 25 N 1.31169 * 120.67715 * 359.97438 * 24 12 11 26 26 H 0.97001 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.08010 * 120.36969 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.69980 * 179.97438 * 11 10 9 29 29 H 1.08008 * 119.66134 * 179.72212 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0077 -1.2130 0.0005 8 1 3.0877 -1.2131 0.0010 9 6 1.3031 -2.4334 0.0016 10 6 2.0146 -3.6497 0.0027 11 6 1.3231 -4.8279 0.0032 12 6 -0.0797 -4.7837 0.0021 13 6 -0.8664 -6.0349 0.0021 14 6 -0.8041 -6.9038 1.0968 15 9 -0.0245 -6.6010 2.1577 16 6 -1.5461 -8.0703 1.0928 17 9 -1.4907 -8.9081 2.1512 18 6 -2.3436 -8.3851 0.0017 19 9 -3.0624 -9.5290 0.0014 20 6 -2.4055 -7.5299 -1.0894 21 9 -3.1838 -7.8432 -2.1483 22 6 -1.6716 -6.3582 -1.0955 23 9 -1.7325 -5.5268 -2.1586 24 6 -0.7268 -3.5401 0.0000 25 7 -0.0349 -2.4257 -0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 3.0947 -3.6506 0.0023 28 1 1.8449 -5.7735 0.0037 29 1 -1.8061 -3.4992 -0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241407839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:07 Heat of formation + Delta-G solvation = -171.288668 kcal Electronic energy + Delta-G solvation = -25171.367894 eV Core-core repulsion = 20473.888479 eV Total energy + Delta-G solvation = -4697.479415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.038 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.16713 -50.87316 -50.39666 -49.89049 -49.53630 -40.45401 -39.31204 -35.75049 -33.51523 -32.50692 -31.26729 -30.59335 -27.63886 -24.88080 -24.62075 -23.70610 -22.66278 -20.12794 -19.97546 -19.51042 -19.37955 -18.45039 -17.88949 -17.68852 -17.55708 -17.18842 -17.07808 -16.80681 -16.55283 -16.17878 -16.14470 -16.02969 -15.90023 -15.64572 -15.56624 -14.50750 -14.35165 -14.11557 -14.08698 -13.66159 -13.15372 -12.91873 -12.84550 -12.81346 -12.54787 -12.30655 -11.85117 -11.28452 -10.44538 -10.20183 -10.04073 -9.62941 -9.44138 -8.41207 -6.63503 -0.88891 -0.84971 0.66098 1.13002 1.41298 1.45594 1.53985 1.56042 1.65028 2.18560 2.34101 2.50140 2.72037 2.72537 3.02098 3.04319 3.61149 3.80252 3.96745 4.10056 4.21840 4.26216 4.43349 4.49176 4.77968 4.86106 5.08664 5.17554 5.39383 5.53736 5.69968 6.01434 6.14607 6.58939 6.82665 8.05950 8.30773 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.003668 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.372343 B = 7631.434431 C = 8312.948276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.438 4.438 8 H 0.099 0.901 9 C 0.224 3.776 10 C -0.282 4.282 11 C -0.021 4.021 12 C -0.293 4.293 13 C -0.005 4.005 14 C 0.116 3.884 15 F -0.108 7.108 16 C 0.071 3.929 17 F -0.106 7.106 18 C 0.087 3.913 19 F -0.101 7.101 20 C 0.070 3.930 21 F -0.106 7.106 22 C 0.114 3.886 23 F -0.110 7.110 24 C 0.155 3.845 25 N -0.521 5.521 26 H 0.285 0.715 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -10.998 0.036 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.204 4.204 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.468 4.468 8 H 0.117 0.883 9 C 0.101 3.899 10 C -0.305 4.305 11 C -0.044 4.044 12 C -0.299 4.299 13 C -0.008 4.008 14 C 0.095 3.905 15 F -0.086 7.086 16 C 0.049 3.951 17 F -0.084 7.084 18 C 0.066 3.934 19 F -0.079 7.079 20 C 0.049 3.951 21 F -0.085 7.085 22 C 0.093 3.907 23 F -0.088 7.088 24 C -0.013 4.013 25 N -0.234 5.234 26 H 0.096 0.904 27 H 0.137 0.863 28 H 0.146 0.854 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.475 -10.054 0.033 10.638 hybrid contribution 0.456 -0.376 -0.013 0.591 sum -3.018 -10.430 0.021 10.858 Atomic orbital electron populations 1.70197 1.09082 1.29927 1.26659 1.27136 0.95787 1.04947 0.92560 0.85123 0.78629 0.74916 0.80328 1.18044 1.19262 1.18026 1.20169 0.95480 0.90389 1.40751 0.88291 1.19110 0.88846 0.93474 0.88461 1.21567 0.99877 0.93178 1.15842 1.20808 0.92283 0.97714 0.93571 1.18611 0.93441 0.90825 1.26984 1.18385 0.96800 0.94926 0.90655 1.17066 0.94405 0.93237 0.85783 1.91586 1.71554 1.92711 1.52786 1.16816 1.01598 0.90300 0.86391 1.91597 1.95034 1.68950 1.52821 1.16505 0.97591 0.85847 0.93495 1.91605 1.74917 1.45071 1.96325 1.16833 0.97369 0.94509 0.86431 1.91596 1.71613 1.92433 1.52812 1.17116 0.99417 0.88409 0.85724 1.91594 1.94642 1.69882 1.52686 1.22942 0.99170 0.87640 0.91521 1.68760 1.07802 1.27317 1.19486 0.90431 0.86344 0.85424 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.66 11.44 21.84 0.25 -37.41 15 2 C 0.02 0.94 5.50 85.30 0.47 1.41 15 3 Si 0.99 35.28 29.56 68.60 2.03 37.30 15 4 H -0.26 -8.80 7.11 99.48 0.71 -8.10 15 5 H -0.27 -9.15 7.11 99.48 0.71 -8.45 15 6 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 7 C -0.44 -22.14 9.11 23.37 0.21 -21.93 15 8 H 0.10 4.56 7.85 -2.91 -0.02 4.54 15 9 C 0.22 11.66 6.55 40.15 0.26 11.92 15 10 C -0.28 -12.83 9.76 22.54 0.22 -12.61 15 11 C -0.02 -0.84 9.65 22.40 0.22 -0.62 15 12 C -0.29 -11.77 4.74 -19.76 -0.09 -11.86 15 13 C 0.00 -0.14 5.35 -19.94 -0.11 -0.25 15 14 C 0.12 3.35 7.25 22.68 0.16 3.52 15 15 F -0.11 -3.45 16.59 44.97 0.75 -2.71 15 16 C 0.07 1.76 7.30 22.40 0.16 1.92 15 17 F -0.11 -2.62 17.08 44.97 0.77 -1.86 15 18 C 0.09 2.06 7.31 22.53 0.16 2.22 15 19 F -0.10 -2.32 17.08 44.97 0.77 -1.55 15 20 C 0.07 1.78 7.30 22.40 0.16 1.94 15 21 F -0.11 -2.70 17.08 44.97 0.77 -1.93 15 22 C 0.11 3.37 7.25 22.68 0.16 3.54 15 23 F -0.11 -3.67 16.60 44.97 0.75 -2.93 15 24 C 0.16 7.13 10.75 85.26 0.92 8.05 15 25 N -0.52 -27.71 7.83 -188.17 -1.47 -29.18 15 26 H 0.28 13.07 8.29 -92.71 -0.77 12.30 15 27 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 28 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 29 H 0.13 5.51 8.06 -2.91 -0.02 5.48 15 Total: -1.00 -54.95 292.72 8.78 -46.17 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.26 Total: 6.84 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 2.92 Total: -12.75 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -1.22 Total: -66.59 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 3.80 Total: -10.98 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.30 kcal Total: -54.95 8.78 -46.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241407839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.119 kcal (2) G-P(sol) polarization free energy of solvation -54.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds