Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86800 * 120.00353 * 2 1 4 4 H 1.48493 * 109.47225 * 240.00388 * 3 2 1 5 5 H 1.48498 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46884 * 119.99899 * 3 2 1 7 7 C 1.40118 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.40729 * 120.00030 * 359.97438 * 7 2 1 10 10 N 1.33727 * 119.95058 * 0.29358 * 9 7 2 11 11 C 1.31269 * 121.63660 * 180.28636 * 10 9 7 12 12 C 1.39091 * 121.36219 * 359.70559 * 11 10 9 13 13 C 1.38308 * 119.74598 * 359.97438 * 12 11 10 14 14 C 1.39790 * 118.47449 * 0.02562 * 13 12 11 15 15 C 1.47628 * 120.66462 * 180.02562 * 14 13 12 16 16 C 1.39980 * 120.14371 * 89.99567 * 15 14 13 17 17 F 1.35103 * 120.06805 * 0.30064 * 16 15 14 18 18 C 1.38235 * 119.85368 * 180.02562 * 16 15 14 19 19 F 1.35105 * 119.92493 * 180.02562 * 18 16 15 20 20 C 1.38779 * 120.14615 * 0.02562 * 18 16 15 21 21 F 1.35097 * 119.85888 * 180.02562 * 20 18 16 22 22 C 1.38785 * 120.28319 * 0.02562 * 20 18 16 23 23 F 1.35101 * 119.92583 * 179.97438 * 22 20 18 24 24 C 1.38233 * 120.14666 * 359.97438 * 22 20 18 25 25 F 1.35102 * 120.07364 * 179.97438 * 24 22 20 26 26 H 0.97000 * 119.99337 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.31535 * 179.71958 * 11 10 9 28 28 H 1.08004 * 120.12193 * 180.02562 * 12 11 10 29 29 H 1.08003 * 120.76498 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6963 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0950 1.6962 1.2125 7 6 2.0077 -1.2135 -0.0005 8 1 3.0877 -1.2136 -0.0001 9 6 1.3040 -2.4322 -0.0005 10 7 -0.0332 -2.4310 -0.0060 11 6 -0.7228 -3.5479 -0.0006 12 6 -0.0925 -4.7878 0.0050 13 6 1.2889 -4.8553 0.0043 14 6 2.0146 -3.6606 -0.0014 15 6 3.4908 -3.6763 -0.0030 16 6 4.1924 -3.6889 -1.2142 17 9 3.5200 -3.6806 -2.3860 18 6 5.5746 -3.7040 -1.2086 19 9 6.2532 -3.7157 -2.3768 20 6 6.2668 -3.7074 -0.0058 21 9 7.6177 -3.7217 -0.0071 22 6 5.5771 -3.6960 1.1985 23 9 6.2582 -3.6998 2.3653 24 6 4.1949 -3.6808 1.2069 25 9 3.5250 -3.6702 2.3801 26 1 -0.4849 0.8401 0.0004 27 1 -1.8019 -3.5032 -0.0006 28 1 -0.6796 -5.6943 0.0090 29 1 1.7954 -5.8092 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241409751.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = -169.980958 kcal Electronic energy + Delta-G solvation = -26062.862462 eV Core-core repulsion = 21365.439753 eV Total energy + Delta-G solvation = -4697.422709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.038 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.17162 -50.86744 -50.39064 -49.88099 -49.53474 -40.47125 -39.21190 -35.63407 -33.85216 -32.23170 -31.27300 -30.28405 -27.69763 -25.32972 -24.54475 -23.45247 -22.58680 -20.12841 -19.97961 -19.48436 -19.35097 -18.48006 -17.89411 -17.70467 -17.53820 -17.18543 -17.08267 -16.78603 -16.51073 -16.16303 -16.14467 -16.02905 -15.98685 -15.65326 -15.56615 -14.58038 -14.36526 -14.02863 -14.01019 -13.53428 -13.14510 -12.97293 -12.89676 -12.85162 -12.60537 -12.22182 -11.84244 -11.29311 -10.20329 -10.17859 -10.03234 -9.60794 -9.50695 -8.39470 -6.64085 -0.84091 -0.83771 0.68833 1.06028 1.37011 1.44629 1.47760 1.51544 1.66749 2.16040 2.35650 2.50507 2.72490 2.76954 3.00237 3.06685 3.59625 3.79299 3.96666 4.21763 4.29386 4.31022 4.49968 4.50988 4.74079 4.89523 5.08308 5.18871 5.36917 5.55021 5.75225 6.02262 6.18114 6.60871 6.84543 8.08567 8.32715 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.006465 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.209153 B = 4329.800598 C = 4966.849599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.030 3.970 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.254 3.746 10 N -0.517 5.517 11 C 0.123 3.877 12 C -0.308 4.308 13 C -0.022 4.022 14 C -0.275 4.275 15 C 0.001 3.999 16 C 0.119 3.881 17 F -0.109 7.109 18 C 0.066 3.934 19 F -0.105 7.105 20 C 0.091 3.909 21 F -0.099 7.099 22 C 0.066 3.934 23 F -0.105 7.105 24 C 0.119 3.881 25 F -0.109 7.109 26 H 0.284 0.716 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -5.166 0.010 10.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.130 3.870 10 N -0.229 5.229 11 C -0.045 4.045 12 C -0.331 4.331 13 C -0.046 4.046 14 C -0.280 4.280 15 C -0.002 4.002 16 C 0.098 3.902 17 F -0.087 7.087 18 C 0.044 3.956 19 F -0.083 7.083 20 C 0.070 3.930 21 F -0.077 7.077 22 C 0.044 3.956 23 F -0.083 7.083 24 C 0.098 3.902 25 F -0.087 7.087 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.152 0.848 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.211 -4.184 0.003 9.215 hybrid contribution 0.657 -0.138 0.006 0.672 sum 8.868 -4.322 0.009 9.865 Atomic orbital electron populations 1.70162 1.08682 1.29640 1.27516 1.26906 0.95697 1.04277 0.92537 0.85429 0.79154 0.76121 0.80352 1.18130 1.18680 1.18137 1.19776 0.94541 0.90507 1.43131 0.89793 1.18805 0.88436 0.91558 0.88152 1.68736 1.07341 1.28442 1.18366 1.23165 1.00178 0.88997 0.92119 1.21577 0.94672 0.98666 1.18167 1.21229 0.94307 0.96006 0.93063 1.18951 0.89010 0.95355 1.24658 1.18370 0.94688 0.98199 0.88958 1.17193 0.86996 1.03759 0.82234 1.91571 1.80005 1.93259 1.43884 1.16802 0.87581 1.09597 0.81604 1.91590 1.78994 1.93966 1.43766 1.16469 0.78238 1.08113 0.90214 1.91604 1.25438 1.93775 1.96874 1.16804 0.87560 1.09598 0.81628 1.91589 1.78862 1.93971 1.43894 1.17195 0.87021 1.03747 0.82216 1.91571 1.80131 1.93255 1.43757 0.90544 0.83909 0.84752 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.92 11.46 21.85 0.25 -37.67 15 2 C 0.03 1.46 5.50 85.31 0.47 1.93 15 3 Si 0.97 36.49 29.56 68.60 2.03 38.52 15 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.45 -22.95 8.78 23.34 0.20 -22.75 15 8 H 0.08 4.03 6.86 -2.91 -0.02 4.01 15 9 C 0.25 13.09 6.57 40.37 0.27 13.36 15 10 N -0.52 -27.22 7.85 -188.39 -1.48 -28.70 15 11 C 0.12 5.50 11.17 84.98 0.95 6.45 15 12 C -0.31 -12.16 10.10 22.49 0.23 -11.93 15 13 C -0.02 -0.86 9.92 22.66 0.22 -0.64 15 14 C -0.28 -12.19 4.67 -19.51 -0.09 -12.28 15 15 C 0.00 0.03 3.90 -19.95 -0.08 -0.05 15 16 C 0.12 4.11 7.29 22.69 0.17 4.28 15 17 F -0.11 -4.12 16.74 44.97 0.75 -3.37 15 18 C 0.07 1.94 7.30 22.40 0.16 2.10 15 19 F -0.10 -3.00 17.08 44.97 0.77 -2.23 15 20 C 0.09 2.52 7.31 22.53 0.16 2.68 15 21 F -0.10 -2.56 17.08 44.97 0.77 -1.79 15 22 C 0.07 1.94 7.30 22.40 0.16 2.10 15 23 F -0.10 -3.00 17.08 44.97 0.77 -2.23 15 24 C 0.12 4.12 7.29 22.69 0.17 4.28 15 25 F -0.11 -4.12 16.74 44.97 0.75 -3.36 15 26 H 0.28 13.14 8.29 -92.71 -0.77 12.37 15 27 H 0.14 5.55 8.06 -2.91 -0.02 5.52 15 28 H 0.13 4.32 8.06 -2.91 -0.02 4.29 15 29 H 0.13 4.29 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -55.76 291.32 8.86 -46.90 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.26 Total: 4.41 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 2.99 Total: -10.45 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.23 Total: -66.37 kcal Atomic # 9 Polarization: -16.80 SS G_CDS: 3.81 Total: -12.99 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Total: -55.76 8.86 -46.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241409751.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.084 kcal (2) G-P(sol) polarization free energy of solvation -55.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds