Wall clock time and date at job start Tue Mar 31 2020 11:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48498 * 109.47450 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47190 * 119.99815 * 3 2 1 7 7 C 1.39941 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99520 * 162.59700 * 7 2 1 9 9 C 1.40797 * 120.00220 * 342.59746 * 7 2 1 10 10 C 1.41030 * 120.10308 * 334.47674 * 9 7 2 11 11 C 1.36042 * 119.92517 * 179.73437 * 10 9 7 12 12 C 1.40345 * 120.15435 * 0.54159 * 11 10 9 13 13 C 1.47217 * 119.89265 * 179.75294 * 12 11 10 14 14 C 1.36138 * 125.40973 * 179.42021 * 13 12 11 15 15 C 1.41593 * 107.73313 * 180.26569 * 14 13 12 16 16 C 1.40880 * 106.95689 * 0.02562 * 15 14 13 17 17 C 1.38991 * 119.54762 * 180.02562 * 16 15 14 18 18 C 1.37846 * 119.99027 * 359.97438 * 17 16 15 19 19 C 1.38824 * 120.66296 * 0.02562 * 18 17 16 20 20 C 1.37651 * 120.43392 * 359.97438 * 19 18 17 21 21 Cl 1.73608 * 120.16168 * 179.97438 * 20 19 18 22 22 N 1.37873 * 125.41910 * 359.72748 * 13 12 11 23 23 H 0.96997 * 125.59492 * 359.72019 * 22 13 12 24 24 C 1.40141 * 120.21458 * 359.48361 * 12 11 10 25 25 C 1.36382 * 120.06567 * 0.22660 * 24 12 11 26 26 F 1.35107 * 120.07898 * 180.02562 * 25 24 12 27 27 H 0.96997 * 119.99477 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.04140 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.92196 * 180.30314 * 11 10 9 30 30 H 1.08000 * 126.13495 * 0.26654 * 14 13 12 31 31 H 1.08007 * 120.00187 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.66797 * 179.97438 * 18 17 16 33 33 H 1.08005 * 119.78685 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.97124 * 180.25069 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0082 -1.2120 0.0005 8 1 3.0512 -1.2335 -0.2792 9 6 1.3526 -2.4032 0.3657 10 6 0.2276 -2.3597 1.2152 11 6 -0.4064 -3.5124 1.5615 12 6 0.0631 -4.7460 1.0844 13 6 -0.6241 -5.9903 1.4671 14 6 -0.2731 -7.2419 1.0623 15 6 -1.1854 -8.1550 1.6443 16 6 -2.0929 -7.3973 2.4105 17 6 -3.1110 -8.0422 3.1028 18 6 -3.2278 -9.4141 3.0363 19 6 -2.3359 -10.1649 2.2826 20 6 -1.3193 -9.5493 1.5882 21 17 -0.2075 -10.4952 0.6484 22 7 -1.7291 -6.0731 2.2875 23 1 -2.1770 -5.3228 2.7087 24 6 1.1807 -4.7965 0.2404 25 6 1.8196 -3.6458 -0.1171 26 9 2.8967 -3.6942 -0.9312 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1329 -1.4118 1.5868 29 1 -1.2708 -3.4786 2.2081 30 1 0.5530 -7.4932 0.4137 31 1 -3.8106 -7.4685 3.6927 32 1 -4.0207 -9.9099 3.5767 33 1 -2.4409 -11.2390 2.2401 34 1 1.5362 -5.7475 -0.1277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245578516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:48 Heat of formation + Delta-G solvation = 7.220074 kcal Electronic energy + Delta-G solvation = -21920.036279 eV Core-core repulsion = 18336.323794 eV Total energy + Delta-G solvation = -3583.712485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.41973 -41.08654 -37.83417 -36.82473 -35.90053 -34.15781 -31.78815 -30.72985 -29.67424 -28.95579 -28.05892 -25.54436 -22.70318 -22.01586 -21.61497 -20.49312 -19.83848 -17.88548 -17.65702 -16.46939 -15.93907 -15.43591 -14.84694 -14.69458 -14.45273 -14.38488 -14.22983 -14.15580 -13.91286 -13.02906 -12.80805 -12.60188 -12.49940 -12.11853 -11.95051 -11.77987 -11.47237 -11.28901 -11.24376 -11.05079 -10.90005 -10.70393 -10.64420 -10.16783 -9.89208 -9.61122 -9.37072 -8.38227 -7.81660 -7.72547 -7.24021 -6.99077 -4.69167 1.01048 1.67470 2.14783 2.39506 2.64190 2.83538 2.86450 2.89995 3.33642 3.42473 3.63412 3.95266 4.30261 4.93079 5.05229 5.21268 5.22584 5.35992 5.47885 5.64550 5.75025 5.82676 5.95670 6.05311 6.10276 6.26719 6.49249 6.54583 6.59269 6.70043 6.76347 6.87614 7.02895 7.16013 7.21506 7.38841 7.61991 7.71069 7.76295 7.83993 8.16785 8.32708 8.49147 9.69969 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.003033 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.929007 B = 9230.682613 C =10233.198929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.426 4.426 8 H 0.091 0.909 9 C 0.097 3.903 10 C -0.154 4.154 11 C -0.080 4.080 12 C -0.182 4.182 13 C 0.203 3.797 14 C -0.241 4.241 15 C -0.071 4.071 16 C 0.087 3.913 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.005 4.005 21 Cl -0.080 7.080 22 N -0.590 5.590 23 H 0.416 0.584 24 C -0.073 4.073 25 C -0.029 4.029 26 F -0.160 7.160 27 H 0.290 0.710 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -8.864 5.083 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.150 4.150 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.453 4.453 8 H 0.109 0.891 9 C 0.093 3.907 10 C -0.173 4.173 11 C -0.100 4.100 12 C -0.185 4.185 13 C 0.095 3.905 14 C -0.264 4.264 15 C -0.077 4.077 16 C -0.021 4.021 17 C -0.138 4.138 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.032 4.032 21 Cl -0.051 7.051 22 N -0.193 5.193 23 H 0.254 0.746 24 C -0.093 4.093 25 C -0.049 4.049 26 F -0.139 7.139 27 H 0.102 0.898 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.472 -8.659 4.992 11.394 hybrid contribution 0.254 0.996 -0.074 1.031 sum -5.218 -7.663 4.917 10.494 Atomic orbital electron populations 1.69803 1.07883 1.30594 1.30709 1.26098 0.94917 1.02129 0.91833 0.86142 0.80155 0.78814 0.80617 1.18409 1.19851 1.18264 1.19703 0.98597 0.91006 1.36002 0.89143 1.17757 0.92107 0.91023 0.89810 1.20752 0.98675 0.97292 1.00574 1.20390 0.98180 0.92287 0.99100 1.17070 1.01489 0.89050 1.10900 1.19031 0.86330 0.94395 0.90774 1.20496 1.05047 0.89924 1.10887 1.17862 0.97913 0.91117 1.00818 1.18075 0.98337 0.83785 1.01866 1.20029 0.97705 0.94486 1.01563 1.20539 0.99750 0.92547 1.00690 1.20633 0.95434 0.99856 0.99589 1.20304 0.94412 0.89667 0.98859 1.98332 1.62557 1.72150 1.72083 1.42017 1.27329 1.06032 1.43949 0.74578 1.20181 0.95150 0.96383 0.97609 1.17300 0.91636 0.94555 1.01420 1.91306 1.53750 1.97283 1.71569 0.89839 0.85501 0.89149 0.84045 0.86237 0.85468 0.85631 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.57 10.98 55.55 0.61 -16.96 16 2 C 0.07 1.62 5.13 -17.33 -0.09 1.53 16 3 Si 0.92 16.75 29.59 -169.99 -5.03 11.72 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.43 -10.40 8.74 -37.98 -0.33 -10.73 16 8 H 0.09 2.17 7.73 -52.49 -0.41 1.76 16 9 C 0.10 2.39 5.57 -106.73 -0.59 1.79 16 10 C -0.15 -3.53 8.61 -39.31 -0.34 -3.87 16 11 C -0.08 -1.66 9.62 -39.58 -0.38 -2.04 16 12 C -0.18 -3.75 5.89 -104.74 -0.62 -4.37 16 13 C 0.20 3.76 6.86 -82.26 -0.56 3.19 16 14 C -0.24 -4.36 10.05 -39.06 -0.39 -4.76 16 15 C -0.07 -1.20 6.04 -106.89 -0.65 -1.85 16 16 C 0.09 1.35 7.25 -83.87 -0.61 0.75 16 17 C -0.12 -1.48 10.06 -39.45 -0.40 -1.88 16 18 C -0.12 -1.34 10.02 -39.51 -0.40 -1.73 16 19 C -0.14 -1.72 9.80 -39.58 -0.39 -2.10 16 20 C -0.01 -0.08 6.36 -39.07 -0.25 -0.33 16 21 Cl -0.08 -1.13 28.86 -51.86 -1.50 -2.63 16 22 N -0.59 -9.31 6.05 -7.27 -0.04 -9.36 16 23 H 0.42 5.51 7.97 -40.82 -0.33 5.19 16 24 C -0.07 -1.59 9.45 -39.54 -0.37 -1.96 16 25 C -0.03 -0.69 7.25 -39.10 -0.28 -0.97 16 26 F -0.16 -3.82 16.70 2.25 0.04 -3.78 16 27 H 0.29 5.96 8.30 -40.82 -0.34 5.63 16 28 H 0.13 2.94 6.20 -52.48 -0.33 2.62 16 29 H 0.09 1.58 7.07 -52.48 -0.37 1.21 16 30 H 0.14 2.50 7.14 -52.49 -0.37 2.12 16 31 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.11 2.18 6.88 -52.49 -0.36 1.82 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -25.56 315.66 -10.38 -35.94 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.57 Total: 9.64 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -6.65 Total: -29.33 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.57 Total: -26.31 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.56 -10.38 -35.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245578516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.158 kcal (2) G-P(sol) polarization free energy of solvation -25.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds