Wall clock time and date at job start Tue Mar 31 2020 11:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48498 * 109.47450 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47190 * 119.99815 * 3 2 1 7 7 C 1.39941 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99520 * 162.59700 * 7 2 1 9 9 C 1.40797 * 120.00220 * 342.59746 * 7 2 1 10 10 C 1.41030 * 120.10308 * 334.47674 * 9 7 2 11 11 C 1.36042 * 119.92517 * 179.73437 * 10 9 7 12 12 C 1.40345 * 120.15435 * 0.54159 * 11 10 9 13 13 C 1.47217 * 119.89265 * 179.75294 * 12 11 10 14 14 C 1.36138 * 125.40973 * 179.42021 * 13 12 11 15 15 C 1.41593 * 107.73313 * 180.26569 * 14 13 12 16 16 C 1.40880 * 106.95689 * 0.02562 * 15 14 13 17 17 C 1.38991 * 119.54762 * 180.02562 * 16 15 14 18 18 C 1.37846 * 119.99027 * 359.97438 * 17 16 15 19 19 C 1.38824 * 120.66296 * 0.02562 * 18 17 16 20 20 C 1.37651 * 120.43392 * 359.97438 * 19 18 17 21 21 Cl 1.73608 * 120.16168 * 179.97438 * 20 19 18 22 22 N 1.37873 * 125.41910 * 359.72748 * 13 12 11 23 23 H 0.96997 * 125.59492 * 359.72019 * 22 13 12 24 24 C 1.40141 * 120.21458 * 359.48361 * 12 11 10 25 25 C 1.36382 * 120.06567 * 0.22660 * 24 12 11 26 26 F 1.35107 * 120.07898 * 180.02562 * 25 24 12 27 27 H 0.96997 * 119.99477 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.04140 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.92196 * 180.30314 * 11 10 9 30 30 H 1.08000 * 126.13495 * 0.26654 * 14 13 12 31 31 H 1.08007 * 120.00187 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.66797 * 179.97438 * 18 17 16 33 33 H 1.08005 * 119.78685 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.97124 * 180.25069 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0082 -1.2120 0.0005 8 1 3.0512 -1.2335 -0.2792 9 6 1.3526 -2.4032 0.3657 10 6 0.2276 -2.3597 1.2152 11 6 -0.4064 -3.5124 1.5615 12 6 0.0631 -4.7460 1.0844 13 6 -0.6241 -5.9903 1.4671 14 6 -0.2731 -7.2419 1.0623 15 6 -1.1854 -8.1550 1.6443 16 6 -2.0929 -7.3973 2.4105 17 6 -3.1110 -8.0422 3.1028 18 6 -3.2278 -9.4141 3.0363 19 6 -2.3359 -10.1649 2.2826 20 6 -1.3193 -9.5493 1.5882 21 17 -0.2075 -10.4952 0.6484 22 7 -1.7291 -6.0731 2.2875 23 1 -2.1770 -5.3228 2.7087 24 6 1.1807 -4.7965 0.2404 25 6 1.8196 -3.6458 -0.1171 26 9 2.8967 -3.6942 -0.9312 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1329 -1.4118 1.5868 29 1 -1.2708 -3.4786 2.2081 30 1 0.5530 -7.4932 0.4137 31 1 -3.8106 -7.4685 3.6927 32 1 -4.0207 -9.9099 3.5767 33 1 -2.4409 -11.2390 2.2401 34 1 1.5362 -5.7475 -0.1277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245578516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:48 Heat of formation + Delta-G solvation = -2.822885 kcal Electronic energy + Delta-G solvation = -21920.471775 eV Core-core repulsion = 18336.323794 eV Total energy + Delta-G solvation = -3584.147981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.27588 -42.31750 -39.42158 -38.04810 -37.02599 -35.80273 -33.04073 -32.28839 -31.27084 -30.22477 -29.44726 -27.10184 -24.16523 -23.30863 -23.04343 -21.94274 -21.26900 -19.49261 -19.03505 -17.89953 -17.45788 -16.78628 -16.36404 -16.21933 -16.08556 -15.82967 -15.61171 -15.39631 -15.17111 -14.58081 -14.37389 -13.94636 -13.76940 -13.67878 -13.44613 -13.19256 -12.92405 -12.74818 -12.73785 -12.31362 -12.12514 -11.94192 -11.84415 -11.79555 -11.59381 -11.21642 -10.62299 -9.87654 -9.51559 -9.00644 -8.86453 -8.40749 -6.47068 -0.21476 0.51398 0.72702 0.86650 1.29651 1.35664 1.41169 1.48747 1.94710 2.11664 2.13392 2.63551 2.85653 3.45419 3.76225 3.88828 4.03221 4.13796 4.22752 4.27181 4.36319 4.40949 4.59419 4.77755 4.85042 4.93945 5.00773 5.04695 5.14275 5.38033 5.45574 5.47434 5.52963 5.65810 5.75461 5.88664 5.97091 6.01893 6.17748 6.39950 6.59376 6.63732 6.73906 8.08204 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.003033 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.929007 B = 9230.682613 C =10233.198929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.078 0.922 9 C 0.069 3.931 10 C -0.166 4.166 11 C -0.079 4.079 12 C -0.166 4.166 13 C 0.174 3.826 14 C -0.238 4.238 15 C -0.107 4.107 16 C 0.082 3.918 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.021 4.021 21 Cl -0.081 7.081 22 N -0.581 5.581 23 H 0.427 0.573 24 C -0.081 4.081 25 C -0.059 4.059 26 F -0.168 7.168 27 H 0.300 0.700 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -10.537 6.907 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.097 0.903 9 C 0.066 3.934 10 C -0.185 4.185 11 C -0.098 4.098 12 C -0.169 4.169 13 C 0.064 3.936 14 C -0.262 4.262 15 C -0.112 4.112 16 C -0.026 4.026 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.151 4.151 20 C -0.048 4.048 21 Cl -0.052 7.052 22 N -0.185 5.185 23 H 0.267 0.733 24 C -0.101 4.101 25 C -0.079 4.079 26 F -0.147 7.147 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.021 -10.342 6.826 14.761 hybrid contribution 0.833 1.058 -0.537 1.450 sum -7.189 -9.284 6.289 13.320 Atomic orbital electron populations 1.69807 1.08928 1.31900 1.31306 1.26827 0.95640 1.04615 0.90818 0.85147 0.78926 0.74908 0.80294 1.18634 1.18199 1.18065 1.19819 0.98513 0.92442 1.38993 0.90343 1.18077 0.93169 0.91500 0.90688 1.20778 0.98864 0.97963 1.00930 1.20687 0.98725 0.91425 0.98931 1.17305 1.00408 0.90201 1.08937 1.18696 0.88229 0.93380 0.93247 1.20625 1.04881 0.90554 1.10147 1.18039 0.98680 0.92138 1.02347 1.18463 0.98845 0.83318 1.01962 1.20490 0.97119 0.95276 1.00979 1.21116 0.99487 0.92109 0.98878 1.21081 0.94310 1.01418 0.98305 1.20572 0.95351 0.89268 0.99607 1.98331 1.62779 1.71897 1.72207 1.41903 1.26454 1.06839 1.43279 0.73279 1.20380 0.95510 0.96247 0.97927 1.17595 0.92345 0.95402 1.02564 1.91262 1.54202 1.97355 1.71912 0.88908 0.86076 0.85805 0.84695 0.83056 0.81236 0.83075 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.47 10.98 21.83 0.24 -37.23 16 2 C 0.04 1.86 5.13 85.25 0.44 2.30 16 3 Si 0.99 35.05 29.59 68.60 2.03 37.08 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 7 C -0.47 -24.34 8.74 23.31 0.20 -24.14 16 8 H 0.08 4.05 7.73 -2.91 -0.02 4.03 16 9 C 0.07 3.60 5.57 -21.23 -0.12 3.48 16 10 C -0.17 -7.90 8.61 22.44 0.19 -7.71 16 11 C -0.08 -3.26 9.62 22.27 0.21 -3.04 16 12 C -0.17 -6.89 5.89 -19.94 -0.12 -7.00 16 13 C 0.17 6.31 6.86 40.07 0.28 6.59 16 14 C -0.24 -8.57 10.05 22.61 0.23 -8.34 16 15 C -0.11 -3.42 6.04 -21.33 -0.13 -3.55 16 16 C 0.08 2.32 7.25 39.02 0.28 2.60 16 17 C -0.12 -2.43 10.06 22.36 0.22 -2.21 16 18 C -0.10 -1.70 10.02 22.32 0.22 -1.47 16 19 C -0.13 -2.78 9.80 22.27 0.22 -2.56 16 20 C -0.02 -0.58 6.36 22.60 0.14 -0.44 16 21 Cl -0.08 -2.18 28.86 -2.72 -0.08 -2.26 16 22 N -0.58 -17.17 6.05 -176.92 -1.07 -18.24 16 23 H 0.43 10.26 7.97 -92.71 -0.74 9.52 16 24 C -0.08 -3.63 9.45 22.30 0.21 -3.42 16 25 C -0.06 -2.97 7.25 22.58 0.16 -2.81 16 26 F -0.17 -8.53 16.70 44.97 0.75 -7.78 16 27 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 28 H 0.12 5.82 6.20 -2.91 -0.02 5.81 16 29 H 0.12 4.16 7.07 -2.91 -0.02 4.13 16 30 H 0.14 4.85 7.14 -2.91 -0.02 4.83 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.12 5.05 6.88 -2.91 -0.02 5.03 16 Total: -1.00 -58.40 315.66 4.97 -53.43 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.44 Total: 26.71 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 2.65 Total: -51.72 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.83 Total: -55.47 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.75 Total: -7.78 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.26 kcal Total: -58.40 4.97 -53.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245578516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.609 kcal (2) G-P(sol) polarization free energy of solvation -58.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds