Wall clock time and date at job start Tue Mar 31 2020 11:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46836 * 270.00200 * 3 2 1 5 5 H 1.48507 * 109.47178 * 29.99922 * 3 2 1 6 6 H 1.48491 * 109.47303 * 149.99912 * 3 2 1 7 7 C 1.39918 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00249 * 197.91583 * 7 2 1 9 9 C 1.41427 * 119.99533 * 17.91288 * 7 2 1 10 10 C 1.40782 * 120.16528 * 24.52513 * 9 7 2 11 11 C 1.37932 * 120.00876 * 180.02562 * 10 9 7 12 12 F 1.35097 * 119.82000 * 179.97438 * 11 10 9 13 13 C 1.38612 * 120.35056 * 359.69609 * 11 10 9 14 14 C 1.39861 * 120.33079 * 0.55839 * 13 11 10 15 15 C 1.47917 * 120.01008 * 179.74647 * 14 13 11 16 16 C 1.35583 * 125.21722 * 179.75023 * 15 14 13 17 17 C 1.46195 * 106.93978 * 179.97438 * 16 15 14 18 18 C 1.40787 * 106.30070 * 359.74661 * 17 16 15 19 19 C 1.39080 * 119.40832 * 180.27963 * 18 17 16 20 20 C 1.37784 * 119.97925 * 0.17183 * 19 18 17 21 21 C 1.38804 * 120.70546 * 0.02562 * 20 19 18 22 22 C 1.37736 * 120.37549 * 359.55862 * 21 20 19 23 23 Cl 1.73598 * 120.18647 * 179.97438 * 22 21 20 24 24 N 1.37601 * 125.21701 * 359.72077 * 15 14 13 25 25 H 0.97007 * 125.10236 * 0.02562 * 24 15 14 26 26 C 1.38997 * 119.97858 * 359.46729 * 14 13 11 27 27 H 0.96993 * 120.00398 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99024 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.83100 * 180.29953 * 13 11 10 30 30 H 1.07998 * 126.52738 * 359.95375 * 16 15 14 31 31 H 1.08006 * 120.00883 * 180.14784 * 19 18 17 32 32 H 1.07996 * 119.64709 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.81307 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.16788 * 180.23470 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6528 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2116 0.0005 8 1 3.0487 -1.2341 0.2882 9 6 1.3524 -2.4069 -0.3757 10 6 0.2232 -2.3603 -1.2151 11 6 -0.4141 -3.5280 -1.5796 12 9 -1.4977 -3.4788 -2.3849 13 6 0.0548 -4.7520 -1.1286 14 6 1.1722 -4.8148 -0.2898 15 6 1.6631 -6.1243 0.1918 16 6 2.7351 -6.3079 1.0014 17 6 2.8591 -7.7474 1.2242 18 6 1.8072 -8.3501 0.5084 19 6 1.6653 -9.7333 0.5384 20 6 2.5479 -10.5003 1.2672 21 6 3.5833 -9.9078 1.9769 22 6 3.7492 -8.5407 1.9556 23 17 5.0454 -7.8047 2.8455 24 7 1.1015 -7.3431 -0.1126 25 1 0.3230 -7.4733 -0.6766 26 6 1.8247 -3.6465 0.0865 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1440 -1.4101 -1.5738 29 1 -0.4478 -5.6615 -1.4231 30 1 3.3755 -5.5374 1.4046 31 1 0.8632 -10.2061 -0.0090 32 1 2.4330 -11.5740 1.2864 33 1 4.2671 -10.5229 2.5430 34 1 2.6900 -3.6917 0.7310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245582457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:55 Heat of formation + Delta-G solvation = 7.254862 kcal Electronic energy + Delta-G solvation = -21898.950926 eV Core-core repulsion = 18315.239949 eV Total energy + Delta-G solvation = -3583.710977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.82418 -41.09385 -37.84329 -36.88698 -36.00418 -33.91268 -31.76359 -30.66055 -29.81427 -29.12991 -27.41900 -25.63624 -23.13156 -22.11525 -21.44292 -20.71931 -19.80278 -18.18651 -17.30817 -16.26430 -15.86029 -15.24074 -15.02830 -14.82096 -14.68274 -14.58932 -14.40785 -14.35333 -14.01135 -13.11519 -12.94663 -12.62258 -12.57478 -12.19505 -11.83180 -11.79298 -11.38425 -11.28386 -11.16775 -11.05645 -10.79847 -10.77647 -10.55997 -10.21614 -9.93730 -9.51692 -9.34312 -8.45471 -7.83198 -7.68752 -7.08241 -6.96214 -4.66497 0.91082 1.54677 2.14594 2.27833 2.48104 2.95175 2.98973 3.00709 3.21297 3.41486 3.77042 3.80509 4.36233 4.74676 4.87519 5.09883 5.18061 5.32354 5.34627 5.45332 5.66393 5.71243 5.93474 5.97475 6.09555 6.34313 6.36539 6.38196 6.55968 6.68530 6.76338 6.85961 6.98193 7.12009 7.25402 7.41667 7.54019 7.65759 7.68452 7.96630 8.30721 8.56568 8.59043 9.92962 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003530 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.212457 B = 7930.091468 C = 9603.233409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.088 0.912 9 C 0.128 3.872 10 C -0.193 4.193 11 C 0.111 3.889 12 F -0.165 7.165 13 C -0.271 4.271 14 C -0.001 4.001 15 C 0.164 3.836 16 C -0.195 4.195 17 C -0.095 4.095 18 C 0.107 3.893 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.142 4.142 22 C 0.010 3.990 23 Cl -0.074 7.074 24 N -0.589 5.589 25 H 0.417 0.583 26 C -0.192 4.192 27 H 0.286 0.714 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -12.878 1.866 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.106 0.894 9 C 0.125 3.875 10 C -0.213 4.213 11 C 0.092 3.908 12 F -0.144 7.144 13 C -0.292 4.292 14 C -0.002 4.002 15 C 0.056 3.944 16 C -0.219 4.219 17 C -0.101 4.101 18 C -0.001 4.001 19 C -0.145 4.145 20 C -0.120 4.120 21 C -0.162 4.162 22 C -0.017 4.017 23 Cl -0.045 7.045 24 N -0.192 5.192 25 H 0.255 0.745 26 C -0.212 4.212 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.566 -12.622 1.860 13.247 hybrid contribution -0.312 0.716 -0.325 0.846 sum 3.254 -11.906 1.535 12.438 Atomic orbital electron populations 1.69799 1.07783 1.30003 1.32938 1.26007 0.94799 1.01822 0.91916 0.86203 0.80525 0.79919 0.79591 1.19014 1.20094 1.18260 1.19660 0.98496 0.90787 1.38843 0.89437 1.17268 0.90164 0.92089 0.88027 1.21412 1.00750 0.96126 1.03023 1.17450 0.85305 0.94823 0.93236 1.91350 1.53565 1.97534 1.71918 1.20078 1.03091 0.95167 1.10819 1.17450 0.95851 0.88639 0.98235 1.19115 0.93737 0.84490 0.97022 1.21626 1.01258 0.92969 1.06031 1.18869 0.96215 0.94062 1.00906 1.18070 0.94239 0.89834 0.98001 1.20071 1.01690 0.89619 1.03161 1.20610 0.94600 0.99334 0.97429 1.20696 1.00392 0.92140 1.02981 1.20283 0.91490 0.92257 0.97638 1.98349 1.48560 1.83521 1.74047 1.41929 1.28474 1.04296 1.44471 0.74540 1.21077 1.03417 0.90960 1.05730 0.90279 0.85028 0.88600 0.82990 0.85944 0.85174 0.85297 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.98 10.96 55.55 0.61 -18.37 16 2 C 0.07 1.74 5.13 -17.35 -0.09 1.65 16 3 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.45 -10.94 9.05 -37.74 -0.34 -11.28 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.13 3.14 5.57 -106.88 -0.60 2.54 16 10 C -0.19 -4.79 8.67 -38.73 -0.34 -5.12 16 11 C 0.11 2.58 7.28 -39.56 -0.29 2.29 16 12 F -0.16 -3.70 17.26 2.25 0.04 -3.66 16 13 C -0.27 -5.72 9.67 -38.84 -0.38 -6.09 16 14 C 0.00 -0.01 5.87 -105.05 -0.62 -0.63 16 15 C 0.16 2.97 6.87 -82.26 -0.56 2.41 16 16 C -0.20 -3.42 10.31 -37.34 -0.38 -3.81 16 17 C -0.09 -1.52 6.20 -105.13 -0.65 -2.17 16 18 C 0.11 1.59 7.26 -83.92 -0.61 0.98 16 19 C -0.12 -1.47 10.06 -39.43 -0.40 -1.87 16 20 C -0.10 -1.06 10.01 -39.54 -0.40 -1.46 16 21 C -0.14 -1.67 9.81 -39.56 -0.39 -2.06 16 22 C 0.01 0.15 6.35 -39.15 -0.25 -0.10 16 23 Cl -0.07 -0.99 28.90 -51.86 -1.50 -2.49 16 24 N -0.59 -9.05 5.98 -7.28 -0.04 -9.10 16 25 H 0.42 5.45 7.93 -40.82 -0.32 5.12 16 26 C -0.19 -4.29 9.28 -38.46 -0.36 -4.65 16 27 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 28 H 0.13 3.40 6.15 -52.49 -0.32 3.08 16 29 H 0.10 1.76 7.04 -52.48 -0.37 1.39 16 30 H 0.15 2.59 7.16 -52.49 -0.38 2.21 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.11 2.28 6.89 -52.49 -0.36 1.92 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -25.99 316.94 -10.36 -36.35 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.57 Total: 9.52 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -6.64 Total: -29.37 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.57 Total: -27.47 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.99 -10.36 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245582457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.602 kcal (2) G-P(sol) polarization free energy of solvation -25.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds