Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46836 * 270.00200 * 3 2 1 5 5 H 1.48507 * 109.47178 * 29.99922 * 3 2 1 6 6 H 1.48491 * 109.47303 * 149.99912 * 3 2 1 7 7 C 1.39918 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00249 * 197.91583 * 7 2 1 9 9 C 1.41427 * 119.99533 * 17.91288 * 7 2 1 10 10 C 1.40782 * 120.16528 * 24.52513 * 9 7 2 11 11 C 1.37932 * 120.00876 * 180.02562 * 10 9 7 12 12 F 1.35097 * 119.82000 * 179.97438 * 11 10 9 13 13 C 1.38612 * 120.35056 * 359.69609 * 11 10 9 14 14 C 1.39861 * 120.33079 * 0.55839 * 13 11 10 15 15 C 1.47917 * 120.01008 * 179.74647 * 14 13 11 16 16 C 1.35583 * 125.21722 * 179.75023 * 15 14 13 17 17 C 1.46195 * 106.93978 * 179.97438 * 16 15 14 18 18 C 1.40787 * 106.30070 * 359.74661 * 17 16 15 19 19 C 1.39080 * 119.40832 * 180.27963 * 18 17 16 20 20 C 1.37784 * 119.97925 * 0.17183 * 19 18 17 21 21 C 1.38804 * 120.70546 * 0.02562 * 20 19 18 22 22 C 1.37736 * 120.37549 * 359.55862 * 21 20 19 23 23 Cl 1.73598 * 120.18647 * 179.97438 * 22 21 20 24 24 N 1.37601 * 125.21701 * 359.72077 * 15 14 13 25 25 H 0.97007 * 125.10236 * 0.02562 * 24 15 14 26 26 C 1.38997 * 119.97858 * 359.46729 * 14 13 11 27 27 H 0.96993 * 120.00398 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99024 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.83100 * 180.29953 * 13 11 10 30 30 H 1.07998 * 126.52738 * 359.95375 * 16 15 14 31 31 H 1.08006 * 120.00883 * 180.14784 * 19 18 17 32 32 H 1.07996 * 119.64709 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.81307 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.16788 * 180.23470 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6528 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2116 0.0005 8 1 3.0487 -1.2341 0.2882 9 6 1.3524 -2.4069 -0.3757 10 6 0.2232 -2.3603 -1.2151 11 6 -0.4141 -3.5280 -1.5796 12 9 -1.4977 -3.4788 -2.3849 13 6 0.0548 -4.7520 -1.1286 14 6 1.1722 -4.8148 -0.2898 15 6 1.6631 -6.1243 0.1918 16 6 2.7351 -6.3079 1.0014 17 6 2.8591 -7.7474 1.2242 18 6 1.8072 -8.3501 0.5084 19 6 1.6653 -9.7333 0.5384 20 6 2.5479 -10.5003 1.2672 21 6 3.5833 -9.9078 1.9769 22 6 3.7492 -8.5407 1.9556 23 17 5.0454 -7.8047 2.8455 24 7 1.1015 -7.3431 -0.1126 25 1 0.3230 -7.4733 -0.6766 26 6 1.8247 -3.6465 0.0865 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1440 -1.4101 -1.5738 29 1 -0.4478 -5.6615 -1.4231 30 1 3.3755 -5.5374 1.4046 31 1 0.8632 -10.2061 -0.0090 32 1 2.4330 -11.5740 1.2864 33 1 4.2671 -10.5229 2.5430 34 1 2.6900 -3.6917 0.7310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245582457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = -3.076634 kcal Electronic energy + Delta-G solvation = -21899.398933 eV Core-core repulsion = 18315.239949 eV Total energy + Delta-G solvation = -3584.158984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.64849 -42.25989 -39.40270 -38.09708 -37.06548 -35.63501 -32.95066 -32.22524 -31.46410 -30.24239 -28.76467 -27.42137 -24.50752 -23.32542 -22.87607 -22.17022 -21.26384 -19.63031 -18.67060 -17.83703 -17.18697 -16.78101 -16.65287 -16.34583 -16.30625 -16.12132 -15.66464 -15.39994 -15.24078 -14.72310 -14.36716 -13.95935 -13.76578 -13.69984 -13.46395 -13.00330 -12.87206 -12.84058 -12.58609 -12.21120 -12.17247 -12.03140 -11.92417 -11.82440 -11.65723 -11.14476 -10.61254 -9.88783 -9.49286 -8.98759 -8.76510 -8.43556 -6.51779 -0.25682 0.49206 0.70225 0.71960 1.25328 1.38945 1.44486 1.53278 1.91618 2.04377 2.17747 2.63572 2.79005 3.41228 3.51153 3.82936 3.91234 4.12122 4.15817 4.28902 4.33280 4.45380 4.60123 4.73404 4.77594 4.85177 4.97023 5.01453 5.18081 5.33956 5.39094 5.45321 5.56656 5.59973 5.66778 5.83673 5.87291 6.02153 6.19146 6.47999 6.55928 6.75760 6.77256 8.20724 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003530 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.212457 B = 7930.091468 C = 9603.233409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.482 4.482 8 H 0.091 0.909 9 C 0.107 3.893 10 C -0.222 4.222 11 C 0.101 3.899 12 F -0.163 7.163 13 C -0.267 4.267 14 C 0.011 3.989 15 C 0.136 3.864 16 C -0.196 4.196 17 C -0.126 4.126 18 C 0.101 3.899 19 C -0.125 4.125 20 C -0.083 4.083 21 C -0.136 4.136 22 C -0.007 4.007 23 Cl -0.077 7.077 24 N -0.582 5.582 25 H 0.426 0.574 26 C -0.207 4.207 27 H 0.293 0.707 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -15.840 2.295 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.510 4.510 8 H 0.109 0.891 9 C 0.104 3.896 10 C -0.242 4.242 11 C 0.082 3.918 12 F -0.142 7.142 13 C -0.287 4.287 14 C 0.010 3.990 15 C 0.028 3.972 16 C -0.220 4.220 17 C -0.131 4.131 18 C -0.008 4.008 19 C -0.145 4.145 20 C -0.102 4.102 21 C -0.155 4.155 22 C -0.035 4.035 23 Cl -0.048 7.048 24 N -0.186 5.186 25 H 0.266 0.734 26 C -0.227 4.227 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.191 0.809 33 H 0.173 0.827 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.110 -15.609 2.281 16.301 hybrid contribution -0.446 1.324 -0.389 1.450 sum 3.665 -14.285 1.892 14.868 Atomic orbital electron populations 1.69858 1.09278 1.31226 1.33669 1.26862 0.95442 1.04926 0.90847 0.85131 0.79224 0.75407 0.79637 1.18670 1.19282 1.17637 1.19946 0.98914 0.91775 1.40339 0.89114 1.17562 0.90474 0.93248 0.88348 1.21321 1.02054 0.96042 1.04786 1.17621 0.85401 0.95276 0.93472 1.91341 1.53410 1.97573 1.71844 1.20367 1.02964 0.95409 1.10003 1.17622 0.94899 0.89684 0.96796 1.18712 0.95095 0.84426 0.98990 1.21732 1.00719 0.94250 1.05313 1.19007 0.97972 0.93327 1.02822 1.18460 0.93720 0.90920 0.97670 1.20529 1.02676 0.88178 1.03131 1.21175 0.92727 1.01349 0.94970 1.21144 1.00811 0.91215 1.02372 1.20531 0.91575 0.93250 0.98094 1.98346 1.48575 1.83813 1.74050 1.41791 1.28737 1.03460 1.44630 0.73431 1.21212 1.04097 0.91075 1.06333 0.89640 0.86910 0.85594 0.83735 0.82841 0.80901 0.82728 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.26 10.96 21.82 0.24 -41.02 16 2 C 0.04 1.73 5.13 85.25 0.44 2.17 16 3 Si 0.99 36.27 29.59 68.60 2.03 38.30 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.48 -24.49 9.05 23.46 0.21 -24.28 16 8 H 0.09 4.37 7.91 -2.91 -0.02 4.34 16 9 C 0.11 5.51 5.57 -21.33 -0.12 5.39 16 10 C -0.22 -11.57 8.67 22.82 0.20 -11.38 16 11 C 0.10 4.84 7.28 22.29 0.16 5.00 16 12 F -0.16 -7.44 17.26 44.97 0.78 -6.66 16 13 C -0.27 -11.31 9.67 22.75 0.22 -11.09 16 14 C 0.01 0.47 5.87 -20.14 -0.12 0.35 16 15 C 0.14 4.91 6.87 40.19 0.28 5.19 16 16 C -0.20 -6.91 10.31 23.72 0.24 -6.66 16 17 C -0.13 -3.89 6.20 -20.19 -0.13 -4.01 16 18 C 0.10 2.74 7.26 39.04 0.28 3.02 16 19 C -0.12 -2.40 10.06 22.36 0.23 -2.17 16 20 C -0.08 -1.32 10.01 22.30 0.22 -1.10 16 21 C -0.14 -2.65 9.81 22.29 0.22 -2.44 16 22 C -0.01 -0.20 6.35 22.55 0.14 -0.05 16 23 Cl -0.08 -1.98 28.90 -2.72 -0.08 -2.06 16 24 N -0.58 -17.01 5.98 -176.96 -1.06 -18.07 16 25 H 0.43 10.28 7.93 -92.70 -0.73 9.54 16 26 C -0.21 -9.65 9.28 23.00 0.21 -9.44 16 27 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 28 H 0.11 6.21 6.15 -2.91 -0.02 6.19 16 29 H 0.13 4.46 7.04 -2.91 -0.02 4.44 16 30 H 0.14 5.12 7.16 -2.91 -0.02 5.10 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 5.10 6.89 -2.91 -0.02 5.08 16 Total: -1.00 -59.00 316.94 5.05 -53.96 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.44 Total: 27.06 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 2.70 Total: -51.50 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.82 Total: -59.09 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.78 Total: -6.66 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -59.00 5.05 -53.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245582457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -59.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds