Wall clock time and date at job start Tue Mar 31 2020 11:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48505 * 109.46979 * 270.00172 * 3 2 1 5 5 H 1.48498 * 109.47201 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47169 * 150.00121 * 3 2 1 7 7 C 1.37872 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.30961 * 126.42500 * 89.97309 * 10 9 7 12 12 C 1.35291 * 105.57784 * 179.97438 * 11 10 9 13 13 C 1.48159 * 126.42544 * 180.26637 * 12 11 10 14 14 C 1.38367 * 120.30658 * 359.43060 * 13 12 11 15 15 C 1.38986 * 120.76095 * 179.80763 * 14 13 12 16 16 C 1.36293 * 121.01517 * 0.45385 * 15 14 13 17 17 C 1.40372 * 120.02349 * 359.79503 * 16 15 14 18 18 C 1.40954 * 121.29040 * 179.97438 * 17 16 15 19 19 Cl 1.73600 * 120.93408 * 359.97438 * 18 17 16 20 20 C 1.36772 * 118.12818 * 180.02562 * 18 17 16 21 21 C 1.39176 * 119.90693 * 359.97438 * 20 18 17 22 22 N 1.31201 * 121.73029 * 0.02562 * 21 20 18 23 23 C 1.33474 * 121.37290 * 359.95951 * 22 21 20 24 24 N 1.30874 * 107.14353 * 0.02562 * 12 11 10 25 25 O 1.21291 * 110.07835 * 359.97438 * 24 12 11 26 26 H 0.97002 * 120.00020 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46831 * 59.99737 * 9 7 2 28 28 H 1.09004 * 109.46901 * 299.99803 * 9 7 2 29 29 H 1.07999 * 119.62004 * 0.02562 * 14 13 12 30 30 H 1.07999 * 119.49722 * 180.22708 * 15 14 13 31 31 H 1.07998 * 119.98968 * 179.76460 * 16 15 14 32 32 H 1.08002 * 120.04357 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.13640 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 2.7352 -4.2347 1.0562 12 6 3.5566 -5.1964 0.5758 13 6 4.3619 -6.1469 1.3779 14 6 4.3282 -6.0974 2.7602 15 6 5.0767 -6.9870 3.5219 16 6 5.8694 -7.9242 2.9297 17 6 5.9360 -8.0047 1.5299 18 6 6.7473 -8.9631 0.8895 19 17 7.6998 -10.0847 1.8106 20 6 6.7639 -8.9837 -0.4780 21 6 5.9922 -8.0742 -1.1951 22 7 5.2386 -7.1840 -0.5942 23 6 5.1769 -7.1106 0.7371 24 7 3.5024 -5.1330 -0.7303 25 8 2.7464 -4.2487 -1.0732 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.7104 -5.3612 3.2531 30 1 5.0322 -6.9324 4.5996 31 1 6.4470 -8.6048 3.5376 32 1 7.3749 -9.7049 -1.0005 33 1 6.0143 -8.1018 -2.2745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247444484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:34 Heat of formation + Delta-G solvation = 113.167401 kcal Electronic energy + Delta-G solvation = -22085.879878 eV Core-core repulsion = 18526.681576 eV Total energy + Delta-G solvation = -3559.198303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.66677 -41.07569 -37.54525 -37.09989 -35.23414 -34.07224 -33.11919 -31.78052 -30.92987 -30.06324 -28.35664 -24.92595 -24.29014 -23.86752 -23.61843 -21.97678 -20.41596 -18.52375 -17.73409 -17.43220 -17.17504 -16.44957 -16.20213 -15.08760 -14.89005 -14.84569 -14.78794 -14.36651 -13.94364 -13.57887 -13.20049 -12.83731 -12.49711 -12.42215 -12.13014 -12.00500 -11.83908 -11.37291 -11.29330 -11.26381 -10.99746 -10.77957 -10.34871 -10.29767 -10.07558 -9.83384 -9.69422 -9.12876 -9.04394 -8.60748 -8.15969 -6.24202 -4.29657 -0.11067 0.50619 1.35398 1.50494 2.15863 2.61887 3.14086 3.24921 3.31258 3.36266 3.75373 3.90759 3.93921 4.01260 4.24236 4.33160 4.41435 4.54350 4.69912 4.83515 5.06186 5.12079 5.15428 5.28469 5.42829 5.47887 5.71796 5.84946 6.06164 6.12625 6.22232 6.49634 6.58802 6.70509 7.13735 7.20879 7.69642 7.70538 7.93199 8.70798 8.97287 9.35217 10.86202 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002877 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.312774 B = 9730.910305 C =10128.054951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.236 3.764 11 N -0.500 5.500 12 C 0.182 3.818 13 C 0.024 3.976 14 C -0.057 4.057 15 C -0.105 4.105 16 C -0.092 4.092 17 C -0.097 4.097 18 C 0.019 3.981 19 Cl -0.048 7.048 20 C -0.164 4.164 21 C 0.140 3.860 22 N -0.437 5.437 23 C 0.154 3.846 24 N -0.352 5.352 25 O 0.068 5.932 26 H 0.268 0.732 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.617 -19.004 3.808 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.062 3.938 10 C 0.017 3.983 11 N -0.233 5.233 12 C -0.087 4.087 13 C 0.022 3.978 14 C -0.079 4.079 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.100 4.100 18 C -0.016 4.016 19 Cl -0.019 7.019 20 C -0.185 4.185 21 C -0.034 4.034 22 N -0.144 5.144 23 C 0.030 3.970 24 N -0.059 5.059 25 O 0.007 5.993 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.480 -18.923 3.373 22.917 hybrid contribution 1.011 0.280 0.496 1.161 sum 13.491 -18.643 3.869 23.335 Atomic orbital electron populations 1.69921 1.06023 1.27591 1.49036 1.24917 0.94978 0.99413 0.94374 0.86365 0.79744 0.82257 0.78401 1.20272 1.20875 1.19678 1.20802 0.93264 0.88873 1.53260 0.92051 1.18207 0.89835 0.84487 1.01225 1.30043 0.94632 0.94752 0.78854 1.72029 1.13079 1.09014 1.29219 1.23391 0.99645 0.97493 0.88206 1.17124 0.95843 0.93143 0.91720 1.21435 0.96890 0.97769 0.91773 1.20911 0.95927 0.94598 1.00829 1.21091 0.98787 0.98881 0.92432 1.18466 0.99205 0.97076 0.95249 1.21025 0.95160 0.92906 0.92497 1.98384 1.69879 1.59601 1.74034 1.21914 1.02118 1.01954 0.92504 1.23092 0.90181 0.89003 1.01082 1.68210 1.17236 1.19964 1.09002 1.18585 0.95160 0.94093 0.89129 1.75137 1.09929 1.06497 1.14354 1.85321 1.42781 1.34361 1.36830 0.92279 0.92318 0.91339 0.83210 0.84281 0.84557 0.83426 0.81309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.05 9.09 -34.44 -0.31 -14.36 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.10 2.47 5.60 -29.04 -0.16 2.31 16 10 C 0.24 5.38 7.68 -12.98 -0.10 5.28 16 11 N -0.50 -11.07 11.24 -9.87 -0.11 -11.18 16 12 C 0.18 3.77 7.78 -156.08 -1.21 2.56 16 13 C 0.02 0.41 5.91 -104.51 -0.62 -0.20 16 14 C -0.06 -0.79 9.66 -39.26 -0.38 -1.17 16 15 C -0.10 -1.10 9.94 -40.00 -0.40 -1.50 16 16 C -0.09 -0.98 9.45 -39.48 -0.37 -1.35 16 17 C -0.10 -1.23 5.74 -106.80 -0.61 -1.84 16 18 C 0.02 0.20 6.37 -39.08 -0.25 -0.05 16 19 Cl -0.05 -0.41 27.65 -51.86 -1.43 -1.85 16 20 C -0.16 -1.55 9.84 -39.76 -0.39 -1.94 16 21 C 0.14 1.60 11.14 -17.47 -0.19 1.40 16 22 N -0.44 -6.96 8.71 -10.82 -0.09 -7.05 16 23 C 0.15 2.43 6.61 -84.62 -0.56 1.87 16 24 N -0.35 -7.60 10.74 30.98 0.33 -7.27 16 25 O 0.07 1.52 11.29 18.01 0.20 1.72 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.15 2.06 7.84 -52.49 -0.41 1.64 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.12 7.04 -52.49 -0.37 0.75 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -30.61 315.43 -8.73 -39.34 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -2.44 Total: -3.03 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -5.66 Total: -7.31 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.86 Total: -49.37 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.72 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.43 Total: -1.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.61 -8.73 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.506 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds