Wall clock time and date at job start Tue Mar 31 2020 11:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48505 * 109.46979 * 270.00172 * 3 2 1 5 5 H 1.48498 * 109.47201 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47169 * 150.00121 * 3 2 1 7 7 C 1.37872 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.30961 * 126.42500 * 89.97309 * 10 9 7 12 12 C 1.35291 * 105.57784 * 179.97438 * 11 10 9 13 13 C 1.48159 * 126.42544 * 180.26637 * 12 11 10 14 14 C 1.38367 * 120.30658 * 359.43060 * 13 12 11 15 15 C 1.38986 * 120.76095 * 179.80763 * 14 13 12 16 16 C 1.36293 * 121.01517 * 0.45385 * 15 14 13 17 17 C 1.40372 * 120.02349 * 359.79503 * 16 15 14 18 18 C 1.40954 * 121.29040 * 179.97438 * 17 16 15 19 19 Cl 1.73600 * 120.93408 * 359.97438 * 18 17 16 20 20 C 1.36772 * 118.12818 * 180.02562 * 18 17 16 21 21 C 1.39176 * 119.90693 * 359.97438 * 20 18 17 22 22 N 1.31201 * 121.73029 * 0.02562 * 21 20 18 23 23 C 1.33474 * 121.37290 * 359.95951 * 22 21 20 24 24 N 1.30874 * 107.14353 * 0.02562 * 12 11 10 25 25 O 1.21291 * 110.07835 * 359.97438 * 24 12 11 26 26 H 0.97002 * 120.00020 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46831 * 59.99737 * 9 7 2 28 28 H 1.09004 * 109.46901 * 299.99803 * 9 7 2 29 29 H 1.07999 * 119.62004 * 0.02562 * 14 13 12 30 30 H 1.07999 * 119.49722 * 180.22708 * 15 14 13 31 31 H 1.07998 * 119.98968 * 179.76460 * 16 15 14 32 32 H 1.08002 * 120.04357 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.13640 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 2.7352 -4.2347 1.0562 12 6 3.5566 -5.1964 0.5758 13 6 4.3619 -6.1469 1.3779 14 6 4.3282 -6.0974 2.7602 15 6 5.0767 -6.9870 3.5219 16 6 5.8694 -7.9242 2.9297 17 6 5.9360 -8.0047 1.5299 18 6 6.7473 -8.9631 0.8895 19 17 7.6998 -10.0847 1.8106 20 6 6.7639 -8.9837 -0.4780 21 6 5.9922 -8.0742 -1.1951 22 7 5.2386 -7.1840 -0.5942 23 6 5.1769 -7.1106 0.7371 24 7 3.5024 -5.1330 -0.7303 25 8 2.7464 -4.2487 -1.0732 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.7104 -5.3612 3.2531 30 1 5.0322 -6.9324 4.5996 31 1 6.4470 -8.6048 3.5376 32 1 7.3749 -9.7049 -1.0005 33 1 6.0143 -8.1018 -2.2745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:33 Heat of formation + Delta-G solvation = 94.769467 kcal Electronic energy + Delta-G solvation = -22086.677672 eV Core-core repulsion = 18526.681576 eV Total energy + Delta-G solvation = -3559.996097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.34299 -42.00910 -38.49479 -37.89436 -36.80918 -35.83227 -34.49702 -33.35496 -31.85636 -31.18352 -30.23092 -26.11763 -25.97172 -25.04042 -24.84519 -23.45593 -21.81938 -19.44098 -19.24384 -18.86632 -18.29070 -18.08888 -17.79927 -16.70421 -16.03116 -15.91200 -15.84814 -15.47142 -14.95035 -14.82965 -14.45594 -14.40400 -14.07478 -13.74935 -13.25416 -13.18104 -13.07065 -12.88567 -12.74834 -12.60911 -12.60289 -12.18897 -12.06969 -11.89839 -11.88924 -11.23621 -10.67480 -10.67272 -10.62145 -10.02075 -9.27058 -8.30606 -6.43847 -1.07430 -0.39787 0.18277 0.60641 0.71082 1.42964 1.43915 1.47913 1.55909 1.87420 2.04878 2.39489 2.54129 2.89120 3.00304 3.06462 3.18499 3.45036 3.53819 3.69181 3.98661 4.16742 4.24426 4.28973 4.37319 4.52720 4.61471 4.79519 4.85696 4.91367 5.10274 5.16339 5.21123 5.27353 5.28757 5.59262 5.60674 5.88529 6.60268 6.80227 7.24751 7.27449 8.80298 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002877 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.312774 B = 9730.910305 C =10128.054951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.111 3.889 10 C 0.226 3.774 11 N -0.509 5.509 12 C 0.193 3.807 13 C -0.032 4.032 14 C -0.045 4.045 15 C -0.104 4.104 16 C -0.071 4.071 17 C -0.112 4.112 18 C 0.018 3.982 19 Cl -0.023 7.023 20 C -0.154 4.154 21 C 0.143 3.857 22 N -0.494 5.494 23 C 0.137 3.863 24 N -0.366 5.366 25 O 0.054 5.946 26 H 0.273 0.727 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.041 -20.695 4.995 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.073 3.927 10 C 0.007 3.993 11 N -0.243 5.243 12 C -0.077 4.077 13 C -0.035 4.035 14 C -0.067 4.067 15 C -0.122 4.122 16 C -0.090 4.090 17 C -0.114 4.114 18 C -0.017 4.017 19 Cl 0.006 6.994 20 C -0.174 4.174 21 C -0.029 4.029 22 N -0.202 5.202 23 C 0.014 3.986 24 N -0.076 5.076 25 O -0.002 6.002 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.197 0.803 31 H 0.185 0.815 32 H 0.203 0.797 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 14.891 -20.613 4.541 25.831 hybrid contribution 0.396 0.574 0.181 0.720 sum 15.286 -20.039 4.722 25.643 Atomic orbital electron populations 1.70003 1.07265 1.28776 1.49297 1.25720 0.95826 1.02613 0.93646 0.85374 0.78374 0.78136 0.78751 1.19397 1.19793 1.19702 1.21002 0.92983 0.90262 1.53960 0.93083 1.17911 0.89867 0.84612 1.00336 1.29688 0.95060 0.94950 0.79584 1.72000 1.13566 1.09596 1.29154 1.24062 0.98564 0.96909 0.88160 1.17375 0.98500 0.94832 0.92784 1.21606 0.96467 0.97855 0.90814 1.21252 0.94946 0.93494 1.02461 1.21516 0.97441 0.98228 0.91815 1.18656 0.99451 0.97242 0.96097 1.21141 0.94738 0.92661 0.93188 1.98396 1.69011 1.58473 1.73526 1.22254 1.01301 1.01568 0.92264 1.23658 0.88846 0.87959 1.02464 1.68157 1.19852 1.22540 1.09658 1.18646 0.95715 0.94592 0.89639 1.75114 1.10625 1.06796 1.15087 1.85295 1.43309 1.34845 1.36732 0.91772 0.92831 0.92497 0.83784 0.80267 0.81469 0.79699 0.78815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 2 C 0.02 1.24 5.46 84.65 0.46 1.70 16 3 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.54 -30.13 9.09 25.60 0.23 -29.89 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.11 5.74 5.60 29.10 0.16 5.90 16 10 C 0.23 10.91 7.68 88.35 0.68 11.59 16 11 N -0.51 -23.65 11.24 -302.37 -3.40 -27.05 16 12 C 0.19 8.37 7.78 137.16 1.07 9.43 16 13 C -0.03 -1.14 5.91 -19.79 -0.12 -1.26 16 14 C -0.05 -1.25 9.66 22.48 0.22 -1.03 16 15 C -0.10 -1.92 9.94 22.00 0.22 -1.70 16 16 C -0.07 -1.28 9.45 22.34 0.21 -1.07 16 17 C -0.11 -2.62 5.74 -21.27 -0.12 -2.74 16 18 C 0.02 0.33 6.37 22.59 0.14 0.47 16 19 Cl -0.02 -0.31 27.65 -2.72 -0.08 -0.39 16 20 C -0.15 -2.46 9.84 22.15 0.22 -2.24 16 21 C 0.14 3.08 11.14 85.01 0.95 4.03 16 22 N -0.49 -15.88 8.71 -188.14 -1.64 -17.52 16 23 C 0.14 4.33 6.61 40.53 0.27 4.60 16 24 N -0.37 -16.64 10.74 -58.96 -0.63 -17.27 16 25 O 0.05 2.57 11.29 74.52 0.84 3.41 16 26 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 29 H 0.14 4.01 7.84 -2.91 -0.02 3.98 16 30 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.17 1.95 7.04 -2.91 -0.02 1.93 16 32 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.17 315.43 3.17 -66.00 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.18 Total: 1.39 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.59 Total: -2.20 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.39 Total: -112.98 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.84 Total: 3.41 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -69.17 3.17 -66.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.767 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds