Wall clock time and date at job start Tue Mar 31 2020 10:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47534 * 270.00452 * 3 2 1 5 5 H 1.48506 * 109.47268 * 30.00468 * 3 2 1 6 6 H 1.48503 * 109.46925 * 149.99887 * 3 2 1 7 7 C 1.38947 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99547 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99895 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00012 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99818 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47301 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00454 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00300 * 180.02562 * 14 13 12 17 17 S 1.81396 * 109.47078 * 180.02562 * 16 14 13 18 18 C 1.81406 * 102.99751 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47019 * 179.97438 * 18 17 16 20 20 C 1.33635 * 122.75319 * 269.73321 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 0.96998 * 119.99966 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00613 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47393 * 59.99968 * 12 10 9 27 27 H 1.08997 * 109.47400 * 299.99992 * 12 10 9 28 28 H 0.96998 * 119.99222 * 359.97438 * 13 12 10 29 29 H 1.08993 * 109.47274 * 59.99800 * 16 14 13 30 30 H 1.09005 * 109.46975 * 299.99910 * 16 14 13 31 31 H 1.08994 * 109.47085 * 59.99990 * 18 17 16 32 32 H 1.08997 * 109.46976 * 299.99569 * 18 17 16 33 33 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 34 34 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0038 15 8 0.5540 -7.4687 -0.0048 16 6 2.7257 -8.3926 -0.0037 17 16 1.8186 -9.9635 -0.0061 18 6 3.1454 -11.2007 -0.0065 19 6 2.5437 -12.5824 -0.0078 20 6 2.2594 -13.2483 1.1154 21 16 1.5770 -14.8084 0.6630 22 6 1.7494 -14.4136 -0.9916 23 7 2.2608 -13.2357 -1.1169 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 -0.0016 26 1 0.6173 -4.9205 -0.8924 27 1 0.6167 -4.9209 0.8875 28 1 3.1493 -5.7992 -0.0030 29 1 3.3517 -8.3354 0.8867 30 1 3.3530 -8.3344 -0.8932 31 1 3.7609 -11.0737 0.8840 32 1 3.7621 -11.0717 -0.8959 33 1 2.4188 -12.8924 2.1226 34 1 1.4706 -15.0571 -1.8130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326481645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:00 Heat of formation + Delta-G solvation = -24.539737 kcal Electronic energy + Delta-G solvation = -19634.662687 eV Core-core repulsion = 16206.980613 eV Total energy + Delta-G solvation = -3427.682075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18571 -39.58158 -38.13021 -34.51726 -33.73516 -32.44900 -31.44422 -30.53273 -28.23313 -27.15584 -25.22169 -24.42989 -20.59831 -20.02725 -19.64060 -18.64510 -18.14824 -17.26647 -16.59013 -16.15213 -15.75647 -15.72249 -15.46564 -14.85890 -14.50098 -14.46438 -14.14077 -13.92912 -13.71849 -13.51441 -13.45697 -12.86757 -12.70776 -12.24388 -11.88703 -11.80646 -11.65762 -11.14688 -10.48149 -10.34850 -10.27381 -10.07802 -9.91899 -9.87465 -9.66773 -9.19234 -8.90664 -8.67897 -8.13482 -7.78273 -6.54258 -3.96536 0.23404 0.95799 1.14561 1.32064 2.20927 2.66704 2.67122 3.09741 3.20023 3.23916 3.32515 3.70026 3.72386 4.08699 4.49456 4.60074 4.78425 4.83417 4.85630 4.88640 5.03995 5.09352 5.14196 5.22193 5.64134 5.85642 5.91183 6.02391 6.56713 7.29093 7.43307 7.65730 7.88474 8.30130 8.41800 9.01388 9.35672 9.83229 10.62499 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.064092 B = 0.001763 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.767548 B =15874.086573 C =16068.096221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.702 5.702 14 C 0.528 3.472 15 O -0.528 6.528 16 C -0.130 4.130 17 S -0.157 6.157 18 C -0.038 4.038 19 C 0.081 3.919 20 C -0.235 4.235 21 S 0.126 5.874 22 C 0.024 3.976 23 N -0.459 5.459 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.412 0.588 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -27.272 1.681 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.357 5.357 14 C 0.312 3.688 15 O -0.405 6.405 16 C -0.282 4.282 17 S 0.070 5.930 18 C -0.189 4.189 19 C -0.052 4.052 20 C -0.377 4.377 21 S 0.378 5.622 22 C -0.275 4.275 23 N -0.172 5.172 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.250 0.750 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.199 0.801 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.646 -28.020 1.650 28.193 hybrid contribution 1.925 2.013 -0.064 2.786 sum 4.572 -26.008 1.586 26.454 Atomic orbital electron populations 1.69615 1.06022 1.28594 1.49109 1.25340 0.95682 0.99983 0.96714 0.85799 0.79209 0.80428 0.78509 1.20240 1.20769 1.19317 1.19731 0.93474 0.81978 1.48375 0.87645 1.41796 1.09518 1.04472 1.62419 1.19712 0.88278 0.84965 0.85775 1.90494 1.13690 1.86814 1.57533 1.20983 0.91775 0.85561 1.03453 1.45579 1.11767 1.04235 1.74122 1.19511 0.88881 0.83242 0.77185 1.90746 1.16143 1.84300 1.49327 1.23517 1.01852 0.95312 1.07498 1.87782 1.10825 0.96375 1.98028 1.21913 0.99439 0.91055 1.06458 1.19371 1.02383 0.96448 0.86993 1.26905 1.08676 0.97968 1.04196 1.84094 1.57465 1.16639 1.04011 1.28419 1.02402 0.96419 1.00257 1.66076 1.13419 1.06449 1.31255 0.91536 0.76990 0.89660 0.89658 0.74999 0.86953 0.86902 0.88288 0.88104 0.80067 0.78131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.05 55.50 0.72 -23.01 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.26 9.68 -14.94 -0.14 -8.40 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.46 5.29 -10.97 -0.06 -13.52 16 10 C 0.43 9.65 7.85 -10.98 -0.09 9.56 16 11 O -0.60 -15.04 15.24 5.54 0.08 -14.95 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.96 16 13 N -0.70 -11.26 5.53 -61.47 -0.34 -11.60 16 14 C 0.53 8.15 7.85 -10.99 -0.09 8.06 16 15 O -0.53 -10.05 15.86 5.56 0.09 -9.97 16 16 C -0.13 -1.45 6.42 36.00 0.23 -1.21 16 17 S -0.16 -1.95 20.86 -107.50 -2.24 -4.19 16 18 C -0.04 -0.34 6.37 36.01 0.23 -0.11 16 19 C 0.08 0.78 6.00 -84.22 -0.51 0.27 16 20 C -0.24 -1.81 11.13 29.12 0.32 -1.49 16 21 S 0.13 0.77 23.22 -107.50 -2.50 -1.73 16 22 C 0.02 0.17 12.23 51.58 0.63 0.80 16 23 N -0.46 -4.76 10.53 -11.89 -0.13 -4.89 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.31 7.44 -40.82 -0.30 6.00 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 31 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -33.57 335.38 -7.39 -40.95 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.52 Total: 12.44 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 0.46 Total: 10.03 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.20 Total: -53.01 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.17 Total: -24.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -4.74 Total: -5.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.57 -7.39 -40.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326481645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.415 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds