Wall clock time and date at job start Tue Mar 31 2020 10:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47534 * 270.00452 * 3 2 1 5 5 H 1.48506 * 109.47268 * 30.00468 * 3 2 1 6 6 H 1.48503 * 109.46925 * 149.99887 * 3 2 1 7 7 C 1.38947 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99547 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99895 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00012 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99818 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47301 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00454 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00300 * 180.02562 * 14 13 12 17 17 S 1.81396 * 109.47078 * 180.02562 * 16 14 13 18 18 C 1.81406 * 102.99751 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47019 * 179.97438 * 18 17 16 20 20 C 1.33635 * 122.75319 * 269.73321 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 0.96998 * 119.99966 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00613 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47393 * 59.99968 * 12 10 9 27 27 H 1.08997 * 109.47400 * 299.99992 * 12 10 9 28 28 H 0.96998 * 119.99222 * 359.97438 * 13 12 10 29 29 H 1.08993 * 109.47274 * 59.99800 * 16 14 13 30 30 H 1.09005 * 109.46975 * 299.99910 * 16 14 13 31 31 H 1.08994 * 109.47085 * 59.99990 * 18 17 16 32 32 H 1.08997 * 109.46976 * 299.99569 * 18 17 16 33 33 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 34 34 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0038 15 8 0.5540 -7.4687 -0.0048 16 6 2.7257 -8.3926 -0.0037 17 16 1.8186 -9.9635 -0.0061 18 6 3.1454 -11.2007 -0.0065 19 6 2.5437 -12.5824 -0.0078 20 6 2.2594 -13.2483 1.1154 21 16 1.5770 -14.8084 0.6630 22 6 1.7494 -14.4136 -0.9916 23 7 2.2608 -13.2357 -1.1169 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 -0.0016 26 1 0.6173 -4.9205 -0.8924 27 1 0.6167 -4.9209 0.8875 28 1 3.1493 -5.7992 -0.0030 29 1 3.3517 -8.3354 0.8867 30 1 3.3530 -8.3344 -0.8932 31 1 3.7609 -11.0737 0.8840 32 1 3.7621 -11.0717 -0.8959 33 1 2.4188 -12.8924 2.1226 34 1 1.4706 -15.0571 -1.8130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326481645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:00 Heat of formation + Delta-G solvation = -49.920977 kcal Electronic energy + Delta-G solvation = -19635.763301 eV Core-core repulsion = 16206.980613 eV Total energy + Delta-G solvation = -3428.782688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01407 -40.75526 -39.87010 -36.27521 -35.34604 -33.39823 -33.05441 -31.65298 -28.97745 -28.55795 -26.30292 -25.76130 -21.83749 -21.41328 -20.66672 -20.09610 -19.26623 -18.54785 -17.65178 -17.20569 -17.04028 -16.90672 -16.67736 -16.29087 -15.89884 -15.79112 -15.50090 -14.92865 -14.72333 -14.45074 -14.15410 -13.96399 -13.86747 -13.66440 -13.53381 -13.27428 -12.90640 -12.46446 -12.38581 -12.12917 -11.57807 -11.21815 -11.07805 -10.65003 -10.57980 -10.43056 -10.27721 -10.10033 -9.75670 -8.69710 -8.51887 -6.02315 -0.34202 0.34394 0.48361 0.76965 1.35865 1.41754 1.43022 1.47316 1.55401 1.89529 1.96918 2.10050 2.31577 3.10225 3.15269 3.20088 3.64837 3.94350 4.05657 4.07033 4.19562 4.28134 4.41039 4.42246 4.42589 4.46724 4.63142 5.07496 5.19546 5.37614 5.90456 6.38841 6.47854 6.73589 7.02172 7.06582 7.42885 7.92567 8.64936 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.064092 B = 0.001763 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.767548 B =15874.086573 C =16068.096221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.567 6.567 16 C -0.114 4.114 17 S -0.225 6.225 18 C -0.018 4.018 19 C 0.054 3.946 20 C -0.242 4.242 21 S 0.170 5.830 22 C 0.015 3.985 23 N -0.499 5.499 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.417 0.583 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.199 0.801 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -28.330 2.135 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.006 4.006 13 N -0.356 5.356 14 C 0.314 3.686 15 O -0.446 6.446 16 C -0.264 4.264 17 S 0.002 5.998 18 C -0.168 4.168 19 C -0.079 4.079 20 C -0.384 4.384 21 S 0.423 5.577 22 C -0.283 4.283 23 N -0.213 5.213 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.256 0.744 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.216 0.784 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.487 -29.103 2.103 29.387 hybrid contribution 1.647 2.165 -0.187 2.726 sum 5.134 -26.939 1.916 27.490 Atomic orbital electron populations 1.69683 1.07036 1.29658 1.49222 1.26148 0.96545 1.02752 0.95764 0.84852 0.77916 0.76425 0.78697 1.19587 1.19700 1.19371 1.19749 0.93011 0.83512 1.50420 0.89442 1.41854 1.09614 1.04656 1.63345 1.20383 0.88121 0.85855 0.83623 1.90471 1.15053 1.87523 1.58064 1.20780 0.91685 0.83857 1.04280 1.45565 1.11580 1.04074 1.74347 1.20177 0.89127 0.83615 0.75678 1.90734 1.18120 1.84812 1.50908 1.23436 1.00542 0.92318 1.10109 1.88005 1.14667 0.98879 1.98268 1.21904 0.97737 0.89407 1.07779 1.19546 1.03842 0.96950 0.87518 1.27236 1.07831 0.98712 1.04648 1.83933 1.56090 1.15115 1.02589 1.28914 1.01405 0.96027 1.01958 1.66089 1.15073 1.07866 1.32288 0.91066 0.76722 0.88885 0.88721 0.74404 0.83872 0.84548 0.85714 0.87936 0.78399 0.75661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.47 29.55 68.60 2.03 43.50 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -27.84 5.29 -306.98 -1.62 -29.47 16 10 C 0.43 19.61 7.85 87.66 0.69 20.30 16 11 O -0.62 -31.36 15.24 -3.08 -0.05 -31.41 16 12 C 0.12 4.37 6.15 85.63 0.53 4.89 16 13 N -0.70 -21.70 5.53 -466.79 -2.58 -24.28 16 14 C 0.53 15.70 7.85 87.66 0.69 16.39 16 15 O -0.57 -21.42 15.86 -3.04 -0.05 -21.46 16 16 C -0.11 -2.29 6.42 71.23 0.46 -1.84 16 17 S -0.23 -5.41 20.86 -56.49 -1.18 -6.59 16 18 C -0.02 -0.30 6.37 71.24 0.45 0.16 16 19 C 0.05 0.98 6.00 41.52 0.25 1.23 16 20 C -0.24 -3.32 11.13 66.77 0.74 -2.58 16 21 S 0.17 1.77 23.22 -56.49 -1.31 0.45 16 22 C 0.01 0.20 12.23 130.65 1.60 1.79 16 23 N -0.50 -9.97 10.53 -191.54 -2.02 -11.99 16 24 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 26 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.42 12.23 7.44 -92.71 -0.69 11.54 16 29 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -72.89 335.38 -0.07 -72.96 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.26 Total: 33.94 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.68 Total: 22.60 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -5.94 Total: -113.98 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.10 Total: -52.88 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.49 Total: -6.13 kcal Total: -72.89 -0.07 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326481645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.036 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds