Wall clock time and date at job start Tue Mar 31 2020 10:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47241 * 240.00078 * 3 2 1 5 5 H 1.48504 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 119.99857 * 3 2 1 7 7 C 1.37875 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99602 * 359.72390 * 7 2 1 10 10 N 1.46499 * 109.46857 * 180.27022 * 9 7 2 11 11 C 1.34778 * 119.99941 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99757 * 180.02562 * 11 10 9 14 14 H 1.08998 * 108.89356 * 333.08378 * 13 11 10 15 15 C 1.54213 * 108.92352 * 214.54763 * 13 11 10 16 16 S 1.83825 * 102.85941 * 214.20975 * 15 13 11 17 17 O 1.42093 * 109.81368 * 282.31428 * 16 15 13 18 18 O 1.42105 * 109.80889 * 147.96204 * 16 15 13 19 19 C 1.83822 * 94.23371 * 35.14242 * 16 15 13 20 20 C 1.52373 * 108.92721 * 91.75917 * 13 11 10 21 21 H 1.09003 * 108.92652 * 241.48504 * 20 13 11 22 22 C 1.52999 * 108.92782 * 0.13043 * 20 13 11 23 23 F 1.39906 * 109.47106 * 61.23823 * 22 20 13 24 24 F 1.39899 * 109.47539 * 181.23716 * 22 20 13 25 25 F 1.39902 * 109.47404 * 301.24186 * 22 20 13 26 26 H 0.97004 * 120.00615 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47454 * 300.27723 * 9 7 2 28 28 H 1.09000 * 109.46879 * 60.27785 * 9 7 2 29 29 H 0.97006 * 120.00043 * 0.02562 * 10 9 7 30 30 H 1.08993 * 110.73660 * 332.55605 * 15 13 11 31 31 H 1.08998 * 110.73370 * 95.86819 * 15 13 11 32 32 H 1.09001 * 110.73144 * 206.51011 * 19 16 15 33 33 H 1.09005 * 110.89339 * 83.27438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0052 10 7 2.2031 -3.6125 0.0099 11 6 1.7539 -4.8833 0.0160 12 8 0.5616 -5.1049 0.0170 13 6 2.7333 -6.0286 0.0214 14 1 3.6616 -5.7015 -0.4470 15 6 2.1452 -7.1935 -0.8003 16 16 2.7669 -8.6769 0.0897 17 8 4.1293 -8.9031 -0.2443 18 8 1.8200 -9.7316 -0.0120 19 6 2.6537 -7.8962 1.7501 20 6 3.0209 -6.4261 1.4640 21 1 4.0822 -6.2812 1.6658 22 6 2.2114 -5.5244 2.3981 23 9 0.8461 -5.6994 2.1477 24 9 2.4886 -5.8612 3.7273 25 9 2.5591 -4.1881 2.1733 26 1 -0.4851 0.8400 0.0004 27 1 0.6244 -2.5530 0.8953 28 1 0.6245 -2.5607 -0.8846 29 1 3.1569 -3.4352 0.0094 30 1 1.0557 -7.1638 -0.7869 31 1 2.5203 -7.1720 -1.8235 32 1 3.3698 -8.3462 2.4377 33 1 1.6410 -7.9709 2.1466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331129171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:38 Heat of formation + Delta-G solvation = -232.994075 kcal Electronic energy + Delta-G solvation = -26135.895623 eV Core-core repulsion = 21682.271927 eV Total energy + Delta-G solvation = -4453.623695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03904 -47.54895 -47.34322 -39.68131 -37.45256 -36.46706 -36.18697 -34.35217 -32.41602 -30.93066 -28.11723 -26.99653 -24.80457 -22.93689 -21.62521 -19.78859 -19.39945 -18.74288 -18.32062 -18.14579 -16.94010 -16.62281 -16.25447 -16.02179 -15.83795 -15.30341 -14.80185 -14.75620 -14.42047 -14.26646 -14.10278 -13.81235 -13.57049 -13.55013 -13.38493 -12.95896 -12.77549 -12.52079 -12.41199 -12.36098 -12.21416 -12.04423 -11.71489 -11.50363 -11.14455 -11.01381 -10.91027 -10.73358 -10.37016 -9.48154 -9.31774 -8.77948 -7.97509 -6.21105 -4.28308 -0.34618 1.99575 2.57841 2.84289 3.06082 3.22244 3.27349 3.28439 3.43581 3.54038 3.74732 3.82432 3.95529 4.13916 4.29678 4.36753 4.46963 4.57606 4.69563 4.93635 5.15318 5.17395 5.19708 5.32534 5.58408 7.18644 7.23722 7.44035 7.56822 7.90164 8.43071 8.64135 8.88542 9.37804 10.88966 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.004275 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.930430 B = 6547.666034 C = 6911.211966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.694 5.694 11 C 0.488 3.512 12 O -0.526 6.526 13 C -0.113 4.113 14 H 0.127 0.873 15 C -0.559 4.559 16 S 2.393 3.607 17 O -0.924 6.924 18 O -0.926 6.926 19 C -0.585 4.585 20 C -0.120 4.120 21 H 0.143 0.857 22 C 0.446 3.554 23 F -0.157 7.157 24 F -0.185 7.185 25 F -0.158 7.158 26 H 0.267 0.733 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.393 0.607 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -15.046 2.673 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.342 5.342 11 C 0.269 3.731 12 O -0.404 6.404 13 C -0.136 4.136 14 H 0.145 0.855 15 C -0.689 4.689 16 S 2.575 3.425 17 O -0.921 6.921 18 O -0.923 6.923 19 C -0.713 4.713 20 C -0.141 4.141 21 H 0.161 0.839 22 C 0.391 3.609 23 F -0.138 7.138 24 F -0.166 7.166 25 F -0.139 7.139 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.227 0.773 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.761 -15.939 2.390 17.888 hybrid contribution 0.553 2.092 0.525 2.226 sum 8.314 -13.847 2.915 16.412 Atomic orbital electron populations 1.69957 1.06112 1.27489 1.48686 1.24934 0.94900 0.99431 0.94638 0.86476 0.79424 0.82316 0.78696 1.20058 1.21066 1.20059 1.21143 0.93217 0.90330 1.53485 0.91912 1.19141 0.88145 0.81662 0.97844 1.46549 1.11479 1.05571 1.70582 1.19862 0.89207 0.84327 0.79673 1.90723 1.15701 1.84116 1.49870 1.21492 1.02632 0.96973 0.92513 0.85486 1.30444 1.14280 1.13290 1.10842 1.09153 0.75920 0.77883 0.79502 1.93652 1.32501 1.84721 1.81220 1.93643 1.63044 1.51211 1.84366 1.30596 1.12883 1.03387 1.24395 1.22525 1.03993 0.93382 0.94190 0.83911 1.20251 0.80089 0.80759 0.79824 1.93355 1.31879 1.95052 1.93492 1.93172 1.93638 1.92307 1.37485 1.93382 1.91801 1.34912 1.93781 0.92348 0.95274 0.95388 0.77350 0.82138 0.83444 0.82960 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.19 9.28 -34.44 -0.32 -14.51 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.34 5.40 -5.19 -0.03 6.31 16 10 N -0.69 -13.20 3.43 -61.47 -0.21 -13.41 16 11 C 0.49 8.36 4.09 -10.98 -0.04 8.31 16 12 O -0.53 -11.00 13.40 5.56 0.07 -10.92 16 13 C -0.11 -1.23 2.92 -91.46 -0.27 -1.50 16 14 H 0.13 0.96 8.11 -51.93 -0.42 0.54 16 15 C -0.56 -5.19 6.82 37.79 0.26 -4.93 16 16 S 2.39 20.60 6.08 -107.50 -0.65 19.94 16 17 O -0.92 -9.91 18.16 -57.66 -1.05 -10.95 16 18 O -0.93 -11.21 18.17 -57.66 -1.05 -12.26 16 19 C -0.59 -4.41 6.50 37.79 0.25 -4.17 16 20 C -0.12 -1.15 2.64 -90.31 -0.24 -1.39 16 21 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 22 C 0.45 6.23 2.28 37.16 0.08 6.32 16 23 F -0.16 -2.67 13.11 2.25 0.03 -2.64 16 24 F -0.18 -2.42 16.98 2.25 0.04 -2.38 16 25 F -0.16 -2.63 13.36 2.25 0.03 -2.60 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.39 6.32 8.11 -40.82 -0.33 5.98 16 30 H 0.16 1.74 6.91 -51.93 -0.36 1.38 16 31 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.15 1.16 7.33 -51.93 -0.38 0.78 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -36.53 299.32 -6.11 -42.63 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.14 Total: 1.37 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.41 Total: -3.89 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.53 Total: -38.21 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -2.02 Total: -34.14 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.10 Total: -7.61 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 20.60 SS G_CDS: -0.65 Total: 19.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.53 -6.11 -42.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331129171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.361 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds