Wall clock time and date at job start Tue Mar 31 2020 10:49:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 119.99647 * 2 1
4 4 H 1.48498 * 109.47241 * 240.00078 * 3 2 1
5 5 H 1.48504 * 109.47265 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47037 * 119.99857 * 3 2 1
7 7 C 1.37875 * 120.00361 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99858 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99602 * 359.72390 * 7 2 1
10 10 N 1.46499 * 109.46857 * 180.27022 * 9 7 2
11 11 C 1.34778 * 119.99941 * 179.97438 * 10 9 7
12 12 O 1.21279 * 119.99886 * 0.02562 * 11 10 9
13 13 C 1.50700 * 119.99757 * 180.02562 * 11 10 9
14 14 H 1.08998 * 108.89356 * 333.08378 * 13 11 10
15 15 C 1.54213 * 108.92352 * 214.54763 * 13 11 10
16 16 S 1.83825 * 102.85941 * 214.20975 * 15 13 11
17 17 O 1.42093 * 109.81368 * 282.31428 * 16 15 13
18 18 O 1.42105 * 109.80889 * 147.96204 * 16 15 13
19 19 C 1.83822 * 94.23371 * 35.14242 * 16 15 13
20 20 C 1.52373 * 108.92721 * 91.75917 * 13 11 10
21 21 H 1.09003 * 108.92652 * 241.48504 * 20 13 11
22 22 C 1.52999 * 108.92782 * 0.13043 * 20 13 11
23 23 F 1.39906 * 109.47106 * 61.23823 * 22 20 13
24 24 F 1.39899 * 109.47539 * 181.23716 * 22 20 13
25 25 F 1.39902 * 109.47404 * 301.24186 * 22 20 13
26 26 H 0.97004 * 120.00615 * 359.97438 * 1 2 3
27 27 H 1.08993 * 109.47454 * 300.27723 * 9 7 2
28 28 H 1.09000 * 109.46879 * 60.27785 * 9 7 2
29 29 H 0.97006 * 120.00043 * 0.02562 * 10 9 7
30 30 H 1.08993 * 110.73660 * 332.55605 * 15 13 11
31 31 H 1.08998 * 110.73370 * 95.86819 * 15 13 11
32 32 H 1.09001 * 110.73144 * 206.51011 * 19 16 15
33 33 H 1.09005 * 110.89339 * 83.27438 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6966 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2511 -2.4991 0.0052
10 7 2.2031 -3.6125 0.0099
11 6 1.7539 -4.8833 0.0160
12 8 0.5616 -5.1049 0.0170
13 6 2.7333 -6.0286 0.0214
14 1 3.6616 -5.7015 -0.4470
15 6 2.1452 -7.1935 -0.8003
16 16 2.7669 -8.6769 0.0897
17 8 4.1293 -8.9031 -0.2443
18 8 1.8200 -9.7316 -0.0120
19 6 2.6537 -7.8962 1.7501
20 6 3.0209 -6.4261 1.4640
21 1 4.0822 -6.2812 1.6658
22 6 2.2114 -5.5244 2.3981
23 9 0.8461 -5.6994 2.1477
24 9 2.4886 -5.8612 3.7273
25 9 2.5591 -4.1881 2.1733
26 1 -0.4851 0.8400 0.0004
27 1 0.6244 -2.5530 0.8953
28 1 0.6245 -2.5607 -0.8846
29 1 3.1569 -3.4352 0.0094
30 1 1.0557 -7.1638 -0.7869
31 1 2.5203 -7.1720 -1.8235
32 1 3.3698 -8.3462 2.4377
33 1 1.6410 -7.9709 2.1466
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331129171.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:38
Heat of formation + Delta-G solvation = -232.994075 kcal
Electronic energy + Delta-G solvation = -26135.895623 eV
Core-core repulsion = 21682.271927 eV
Total energy + Delta-G solvation = -4453.623695 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.058 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-50.03904 -47.54895 -47.34322 -39.68131 -37.45256 -36.46706 -36.18697 -34.35217
-32.41602 -30.93066 -28.11723 -26.99653 -24.80457 -22.93689 -21.62521 -19.78859
-19.39945 -18.74288 -18.32062 -18.14579 -16.94010 -16.62281 -16.25447 -16.02179
-15.83795 -15.30341 -14.80185 -14.75620 -14.42047 -14.26646 -14.10278 -13.81235
-13.57049 -13.55013 -13.38493 -12.95896 -12.77549 -12.52079 -12.41199 -12.36098
-12.21416 -12.04423 -11.71489 -11.50363 -11.14455 -11.01381 -10.91027 -10.73358
-10.37016 -9.48154 -9.31774 -8.77948 -7.97509 -6.21105 -4.28308 -0.34618
1.99575 2.57841 2.84289 3.06082 3.22244 3.27349 3.28439 3.43581
3.54038 3.74732 3.82432 3.95529 4.13916 4.29678 4.36753 4.46963
4.57606 4.69563 4.93635 5.15318 5.17395 5.19708 5.32534 5.58408
7.18644 7.23722 7.44035 7.56822 7.90164 8.43071 8.64135 8.88542
9.37804 10.88966
Molecular weight = 315.06amu
Principal moments of inertia in cm(-1)
A = 0.024884 B = 0.004275 C = 0.004050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1124.930430 B = 6547.666034 C = 6911.211966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.065 3.935
3 Si 0.904 3.096
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.543 4.543
8 H 0.063 0.937
9 C 0.252 3.748
10 N -0.694 5.694
11 C 0.488 3.512
12 O -0.526 6.526
13 C -0.113 4.113
14 H 0.127 0.873
15 C -0.559 4.559
16 S 2.393 3.607
17 O -0.924 6.924
18 O -0.926 6.926
19 C -0.585 4.585
20 C -0.120 4.120
21 H 0.143 0.857
22 C 0.446 3.554
23 F -0.157 7.157
24 F -0.185 7.185
25 F -0.158 7.158
26 H 0.267 0.733
27 H 0.029 0.971
28 H 0.028 0.972
29 H 0.393 0.607
30 H 0.161 0.839
31 H 0.147 0.853
32 H 0.152 0.848
33 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.525 -15.046 2.673 17.498
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.139 4.139
3 Si 0.731 3.269
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.582 4.582
8 H 0.081 0.919
9 C 0.132 3.868
10 N -0.342 5.342
11 C 0.269 3.731
12 O -0.404 6.404
13 C -0.136 4.136
14 H 0.145 0.855
15 C -0.689 4.689
16 S 2.575 3.425
17 O -0.921 6.921
18 O -0.923 6.923
19 C -0.713 4.713
20 C -0.141 4.141
21 H 0.161 0.839
22 C 0.391 3.609
23 F -0.138 7.138
24 F -0.166 7.166
25 F -0.139 7.139
26 H 0.077 0.923
27 H 0.047 0.953
28 H 0.046 0.954
29 H 0.227 0.773
30 H 0.179 0.821
31 H 0.166 0.834
32 H 0.170 0.830
33 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 7.761 -15.939 2.390 17.888
hybrid contribution 0.553 2.092 0.525 2.226
sum 8.314 -13.847 2.915 16.412
Atomic orbital electron populations
1.69957 1.06112 1.27489 1.48686 1.24934 0.94900 0.99431 0.94638
0.86476 0.79424 0.82316 0.78696 1.20058 1.21066 1.20059 1.21143
0.93217 0.90330 1.53485 0.91912 1.19141 0.88145 0.81662 0.97844
1.46549 1.11479 1.05571 1.70582 1.19862 0.89207 0.84327 0.79673
1.90723 1.15701 1.84116 1.49870 1.21492 1.02632 0.96973 0.92513
0.85486 1.30444 1.14280 1.13290 1.10842 1.09153 0.75920 0.77883
0.79502 1.93652 1.32501 1.84721 1.81220 1.93643 1.63044 1.51211
1.84366 1.30596 1.12883 1.03387 1.24395 1.22525 1.03993 0.93382
0.94190 0.83911 1.20251 0.80089 0.80759 0.79824 1.93355 1.31879
1.95052 1.93492 1.93172 1.93638 1.92307 1.37485 1.93382 1.91801
1.34912 1.93781 0.92348 0.95274 0.95388 0.77350 0.82138 0.83444
0.82960 0.83110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16
4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
7 C -0.54 -14.19 9.28 -34.44 -0.32 -14.51 16
8 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16
9 C 0.25 6.34 5.40 -5.19 -0.03 6.31 16
10 N -0.69 -13.20 3.43 -61.47 -0.21 -13.41 16
11 C 0.49 8.36 4.09 -10.98 -0.04 8.31 16
12 O -0.53 -11.00 13.40 5.56 0.07 -10.92 16
13 C -0.11 -1.23 2.92 -91.46 -0.27 -1.50 16
14 H 0.13 0.96 8.11 -51.93 -0.42 0.54 16
15 C -0.56 -5.19 6.82 37.79 0.26 -4.93 16
16 S 2.39 20.60 6.08 -107.50 -0.65 19.94 16
17 O -0.92 -9.91 18.16 -57.66 -1.05 -10.95 16
18 O -0.93 -11.21 18.17 -57.66 -1.05 -12.26 16
19 C -0.59 -4.41 6.50 37.79 0.25 -4.17 16
20 C -0.12 -1.15 2.64 -90.31 -0.24 -1.39 16
21 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16
22 C 0.45 6.23 2.28 37.16 0.08 6.32 16
23 F -0.16 -2.67 13.11 2.25 0.03 -2.64 16
24 F -0.18 -2.42 16.98 2.25 0.04 -2.38 16
25 F -0.16 -2.63 13.36 2.25 0.03 -2.60 16
26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16
28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
29 H 0.39 6.32 8.11 -40.82 -0.33 5.98 16
30 H 0.16 1.74 6.91 -51.93 -0.36 1.38 16
31 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.15 1.16 7.33 -51.93 -0.38 0.78 16
LS Contribution 299.32 15.07 4.51 4.51
Total: -1.00 -36.53 299.32 -6.11 -42.63
By element:
Atomic # 1 Polarization: 4.51 SS G_CDS: -3.14 Total: 1.37 kcal
Atomic # 6 Polarization: -3.49 SS G_CDS: -0.41 Total: -3.89 kcal
Atomic # 7 Polarization: -38.74 SS G_CDS: 0.53 Total: -38.21 kcal
Atomic # 8 Polarization: -32.12 SS G_CDS: -2.02 Total: -34.14 kcal
Atomic # 9 Polarization: -7.71 SS G_CDS: 0.10 Total: -7.61 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Atomic # 16 Polarization: 20.60 SS G_CDS: -0.65 Total: 19.94 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -36.53 -6.11 -42.63 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331129171.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -190.361 kcal
(2) G-P(sol) polarization free energy of solvation -36.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.887 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -232.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds