Wall clock time and date at job start Tue Mar 31 2020 10:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47241 * 240.00078 * 3 2 1 5 5 H 1.48504 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 119.99857 * 3 2 1 7 7 C 1.37875 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99602 * 359.72390 * 7 2 1 10 10 N 1.46499 * 109.46857 * 180.27022 * 9 7 2 11 11 C 1.34778 * 119.99941 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99757 * 180.02562 * 11 10 9 14 14 H 1.08998 * 108.89356 * 333.08378 * 13 11 10 15 15 C 1.54213 * 108.92352 * 214.54763 * 13 11 10 16 16 S 1.83825 * 102.85941 * 214.20975 * 15 13 11 17 17 O 1.42093 * 109.81368 * 282.31428 * 16 15 13 18 18 O 1.42105 * 109.80889 * 147.96204 * 16 15 13 19 19 C 1.83822 * 94.23371 * 35.14242 * 16 15 13 20 20 C 1.52373 * 108.92721 * 91.75917 * 13 11 10 21 21 H 1.09003 * 108.92652 * 241.48504 * 20 13 11 22 22 C 1.52999 * 108.92782 * 0.13043 * 20 13 11 23 23 F 1.39906 * 109.47106 * 61.23823 * 22 20 13 24 24 F 1.39899 * 109.47539 * 181.23716 * 22 20 13 25 25 F 1.39902 * 109.47404 * 301.24186 * 22 20 13 26 26 H 0.97004 * 120.00615 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47454 * 300.27723 * 9 7 2 28 28 H 1.09000 * 109.46879 * 60.27785 * 9 7 2 29 29 H 0.97006 * 120.00043 * 0.02562 * 10 9 7 30 30 H 1.08993 * 110.73660 * 332.55605 * 15 13 11 31 31 H 1.08998 * 110.73370 * 95.86819 * 15 13 11 32 32 H 1.09001 * 110.73144 * 206.51011 * 19 16 15 33 33 H 1.09005 * 110.89339 * 83.27438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0052 10 7 2.2031 -3.6125 0.0099 11 6 1.7539 -4.8833 0.0160 12 8 0.5616 -5.1049 0.0170 13 6 2.7333 -6.0286 0.0214 14 1 3.6616 -5.7015 -0.4470 15 6 2.1452 -7.1935 -0.8003 16 16 2.7669 -8.6769 0.0897 17 8 4.1293 -8.9031 -0.2443 18 8 1.8200 -9.7316 -0.0120 19 6 2.6537 -7.8962 1.7501 20 6 3.0209 -6.4261 1.4640 21 1 4.0822 -6.2812 1.6658 22 6 2.2114 -5.5244 2.3981 23 9 0.8461 -5.6994 2.1477 24 9 2.4886 -5.8612 3.7273 25 9 2.5591 -4.1881 2.1733 26 1 -0.4851 0.8400 0.0004 27 1 0.6244 -2.5530 0.8953 28 1 0.6245 -2.5607 -0.8846 29 1 3.1569 -3.4352 0.0094 30 1 1.0557 -7.1638 -0.7869 31 1 2.5203 -7.1720 -1.8235 32 1 3.3698 -8.3462 2.4377 33 1 1.6410 -7.9709 2.1466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331129171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:37 Heat of formation + Delta-G solvation = -262.777817 kcal Electronic energy + Delta-G solvation = -26137.187143 eV Core-core repulsion = 21682.271927 eV Total energy + Delta-G solvation = -4454.915215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.18234 -48.66209 -48.56910 -40.98846 -38.29414 -37.40268 -37.08943 -36.11369 -34.33386 -31.76306 -29.65889 -28.20113 -26.01092 -24.51943 -22.91001 -21.10080 -20.21821 -19.90939 -19.44968 -19.26929 -18.27042 -17.73337 -17.31380 -17.10229 -16.82700 -16.76179 -16.19964 -16.00635 -15.72832 -15.46004 -15.22860 -15.01348 -14.75961 -14.68514 -14.38774 -14.20554 -14.09244 -13.94813 -13.63914 -13.34368 -13.20525 -13.14085 -12.92648 -12.89146 -12.65927 -12.41040 -12.22850 -11.92566 -11.54528 -11.48310 -10.78525 -10.76553 -9.73781 -8.27779 -6.43447 -1.06405 1.24704 1.43433 1.47004 1.54792 1.58438 1.62883 2.27079 2.30517 2.46387 2.74445 2.75734 2.80152 3.07601 3.10182 3.30791 3.43280 3.59560 3.74611 3.90096 4.09598 4.39476 4.48492 4.60188 4.84626 5.13459 5.27882 5.48539 5.68565 5.86593 6.67038 6.84965 7.24635 7.44092 8.84033 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.004275 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.930430 B = 6547.666034 C = 6911.211966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.272 3.728 10 N -0.693 5.693 11 C 0.485 3.515 12 O -0.571 6.571 13 C -0.106 4.106 14 H 0.173 0.827 15 C -0.566 4.566 16 S 2.433 3.567 17 O -0.935 6.935 18 O -0.962 6.962 19 C -0.578 4.578 20 C -0.114 4.114 21 H 0.194 0.806 22 C 0.431 3.569 23 F -0.183 7.183 24 F -0.180 7.180 25 F -0.178 7.178 26 H 0.267 0.733 27 H -0.016 1.016 28 H -0.012 1.012 29 H 0.410 0.590 30 H 0.141 0.859 31 H 0.175 0.825 32 H 0.193 0.807 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -15.678 2.805 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.102 0.898 9 C 0.150 3.850 10 N -0.343 5.343 11 C 0.270 3.730 12 O -0.451 6.451 13 C -0.129 4.129 14 H 0.191 0.809 15 C -0.695 4.695 16 S 2.617 3.383 17 O -0.933 6.933 18 O -0.959 6.959 19 C -0.706 4.706 20 C -0.135 4.135 21 H 0.211 0.789 22 C 0.377 3.623 23 F -0.165 7.165 24 F -0.161 7.161 25 F -0.160 7.160 26 H 0.076 0.924 27 H 0.002 0.998 28 H 0.006 0.994 29 H 0.247 0.753 30 H 0.159 0.841 31 H 0.192 0.808 32 H 0.210 0.790 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.221 -16.616 2.505 20.206 hybrid contribution -0.580 2.236 0.544 2.374 sum 10.641 -14.379 3.050 18.147 Atomic orbital electron populations 1.70130 1.08262 1.28484 1.50213 1.26019 0.95690 1.03798 0.94026 0.85266 0.77940 0.76883 0.79481 1.18488 1.21372 1.18858 1.21581 0.94307 0.90579 1.52506 0.89757 1.18455 0.88541 0.84189 0.93858 1.46226 1.11299 1.05163 1.71582 1.20880 0.89848 0.84945 0.77353 1.90707 1.18411 1.84904 1.51034 1.21636 1.02425 0.94409 0.94382 0.80937 1.30550 1.13248 1.13082 1.12656 1.07979 0.74543 0.76621 0.79204 1.93633 1.32951 1.84875 1.81800 1.93599 1.64179 1.52969 1.85179 1.30657 1.14156 1.01755 1.24052 1.22792 1.05846 0.93147 0.91697 0.78895 1.21017 0.79559 0.80712 0.81053 1.93307 1.34319 1.95115 1.93710 1.93175 1.93440 1.92109 1.37380 1.93331 1.91807 1.36889 1.93955 0.92398 0.99841 0.99380 0.75342 0.84107 0.80770 0.78980 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.55 -29.09 9.28 25.60 0.24 -28.86 16 8 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 9 C 0.27 14.35 5.40 85.63 0.46 14.81 16 10 N -0.69 -26.46 3.43 -466.79 -1.60 -28.06 16 11 C 0.49 16.57 4.09 87.66 0.36 16.93 16 12 O -0.57 -24.93 13.40 -3.03 -0.04 -24.97 16 13 C -0.11 -2.01 2.92 -11.34 -0.03 -2.04 16 14 H 0.17 1.73 8.11 -2.39 -0.02 1.71 16 15 C -0.57 -9.35 6.82 72.39 0.49 -8.85 16 16 S 2.43 35.05 6.08 -56.49 -0.34 34.70 16 17 O -0.94 -16.44 18.16 -127.53 -2.32 -18.76 16 18 O -0.96 -21.92 18.17 -127.53 -2.32 -24.24 16 19 C -0.58 -6.68 6.50 72.39 0.47 -6.21 16 20 C -0.11 -1.79 2.64 -10.59 -0.03 -1.82 16 21 H 0.19 1.15 8.14 -2.39 -0.02 1.13 16 22 C 0.43 11.54 2.28 71.98 0.16 11.70 16 23 F -0.18 -6.41 13.11 44.97 0.59 -5.82 16 24 F -0.18 -4.39 16.98 44.97 0.76 -3.62 16 25 F -0.18 -5.87 13.36 44.97 0.60 -5.27 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.41 12.55 8.11 -92.70 -0.75 11.80 16 30 H 0.14 3.05 6.91 -2.39 -0.02 3.04 16 31 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.19 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.15 1.97 7.33 -2.38 -0.02 1.95 16 Total: -1.00 -84.65 299.32 0.66 -83.99 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.43 Total: 7.46 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 2.59 Total: -3.65 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.32 Total: -83.51 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -4.67 Total: -67.97 kcal Atomic # 9 Polarization: -16.66 SS G_CDS: 1.95 Total: -14.70 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 35.05 SS G_CDS: -0.34 Total: 34.70 kcal Total: -84.65 0.66 -83.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331129171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.791 kcal (2) G-P(sol) polarization free energy of solvation -84.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds