Wall clock time and date at job start Tue Mar 31 2020 11:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76202 * 100.00198 * 2 1 4 4 N 1.32545 * 119.19277 * 359.97420 * 3 2 1 5 5 C 1.32707 * 120.63881 * 180.02562 * 4 3 2 6 6 O 1.35512 * 120.46990 * 180.02562 * 5 4 3 7 7 C 1.39459 * 119.07182 * 359.75656 * 5 4 3 8 8 C 1.38212 * 118.51840 * 0.48451 * 7 5 4 9 9 C 1.50699 * 120.36616 * 179.78327 * 8 7 5 10 10 N 1.46499 * 109.46700 * 94.72211 * 9 8 7 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 S 1.81008 * 109.46759 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99946 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00252 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00327 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99735 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47351 * 90.00094 * 19 17 15 21 21 H 1.48496 * 109.47299 * 210.00069 * 19 17 15 22 22 H 1.48507 * 109.47281 * 330.00181 * 19 17 15 23 23 N 1.32453 * 119.27181 * 359.51216 * 8 7 5 24 24 H 1.09006 * 109.47273 * 59.99959 * 1 2 3 25 25 H 1.08999 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47371 * 300.00506 * 1 2 3 27 27 H 0.96705 * 113.99617 * 89.99546 * 6 5 4 28 28 H 1.08000 * 120.74432 * 180.24764 * 7 5 4 29 29 H 1.08998 * 109.46743 * 334.72687 * 9 8 7 30 30 H 1.08994 * 109.47542 * 214.72546 * 9 8 7 31 31 H 0.97005 * 120.00261 * 0.02562 * 10 9 8 32 32 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 33 33 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 34 34 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0888 2.5729 -0.0005 5 6 1.2862 3.8852 -0.0010 6 8 0.2334 4.7385 -0.0011 7 6 2.5923 4.3739 0.0041 8 6 3.6360 3.4678 -0.0006 9 6 5.0637 3.9502 -0.0002 10 7 5.5641 3.9933 1.3760 11 6 6.8261 4.3978 1.6218 12 8 7.5472 4.7265 0.7037 13 6 7.3389 4.4478 3.0380 14 16 9.0537 5.0272 3.0385 15 6 9.3885 4.9907 4.7680 16 1 8.6225 4.6725 5.4597 17 6 10.6366 5.3709 5.2415 18 7 10.8868 5.3432 6.5335 19 14 11.9611 5.9219 4.0453 20 1 11.8659 7.3901 3.8431 21 1 13.2979 5.5840 4.5967 22 1 11.7727 5.2300 2.7448 23 7 3.3676 2.1708 -0.0001 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.0719 4.9863 0.8824 28 1 2.7841 5.4368 0.0079 29 1 5.1099 4.9487 -0.4350 30 1 5.6777 3.2688 -0.5890 31 1 4.9872 3.7307 2.1103 32 1 6.7244 5.1323 3.6228 33 1 7.2915 3.4514 3.4770 34 1 11.7589 5.6092 6.8644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332195390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:16 Heat of formation + Delta-G solvation = -26.607086 kcal Electronic energy + Delta-G solvation = -20143.638520 eV Core-core repulsion = 16715.866799 eV Total energy + Delta-G solvation = -3427.771722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62659 -39.35147 -38.18610 -35.52339 -33.41415 -32.45224 -32.06669 -29.97692 -29.33816 -26.99995 -25.61087 -25.17924 -23.15714 -20.64886 -19.70675 -18.57002 -17.89256 -17.68785 -16.60755 -16.35226 -16.18588 -15.81599 -15.31799 -15.00357 -14.90464 -14.66597 -13.95932 -13.79029 -13.71670 -13.42604 -13.27432 -12.93643 -12.80058 -12.67297 -11.97083 -11.55668 -11.29146 -11.14591 -11.01764 -10.85532 -10.64536 -10.56077 -9.94071 -9.86107 -9.61081 -9.16218 -9.01005 -8.52603 -8.26381 -6.93826 -6.30087 -4.02236 0.15777 0.32865 0.72202 1.62510 2.60180 2.83282 2.88177 3.04626 3.31434 3.34782 3.49849 3.53067 3.69557 4.05633 4.32057 4.40116 4.58973 4.68394 4.71008 4.74110 4.78735 5.08976 5.16098 5.28110 5.35120 5.42773 5.58602 5.72676 5.97813 6.29575 6.32295 6.76994 7.29594 7.44231 7.92879 8.36358 8.40494 9.15939 10.79116 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.002399 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.677795 B =11667.373690 C =12037.242117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.020 5.980 3 C 0.319 3.681 4 N -0.545 5.545 5 C 0.378 3.622 6 O -0.473 6.473 7 C -0.232 4.232 8 C 0.192 3.808 9 C 0.173 3.827 10 N -0.731 5.731 11 C 0.535 3.465 12 O -0.515 6.515 13 C -0.123 4.123 14 S -0.139 6.139 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 N -0.491 5.491 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.411 0.589 28 H 0.160 0.840 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.775 -6.614 -12.622 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.254 5.746 3 C -0.057 4.057 4 N -0.275 5.275 5 C 0.188 3.812 6 O -0.281 6.281 7 C -0.259 4.259 8 C 0.043 3.957 9 C 0.048 3.952 10 N -0.386 5.386 11 C 0.321 3.679 12 O -0.388 6.388 13 C -0.274 4.274 14 S 0.087 5.913 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 N -0.210 5.210 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.271 0.729 28 H 0.178 0.822 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.879 -7.997 -14.612 28.300 hybrid contribution -1.443 1.895 1.660 2.903 sum -24.322 -6.102 -12.953 28.224 Atomic orbital electron populations 1.23614 0.94228 1.06575 1.07306 1.86103 1.06573 0.92159 1.89803 1.24856 0.85959 1.00497 0.94356 1.68272 1.36077 1.04243 1.18883 1.19350 0.86377 0.85973 0.89529 1.84725 1.48082 1.60762 1.34547 1.22835 0.92472 1.03600 1.07040 1.21658 0.96521 0.87878 0.89625 1.20120 0.86899 1.02357 0.85826 1.45838 1.14608 1.70587 1.07586 1.20303 0.80400 0.75846 0.91311 1.90719 1.55733 1.46397 1.45995 1.23269 1.03202 1.05919 0.94990 1.84797 1.06922 1.87158 1.12448 1.22309 1.03070 1.52245 0.89321 0.89365 1.24715 0.97716 0.93824 0.95078 1.69935 1.23377 1.46006 1.12341 0.86733 0.81408 0.80639 0.83060 1.19208 1.19929 1.15866 1.68399 1.20735 1.16516 1.15354 0.89019 0.87338 0.89027 0.72880 0.82234 0.88848 0.88721 0.76519 0.88379 0.88260 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.62 101.05 0.97 0.14 16 2 S 0.02 0.17 22.89 -107.50 -2.46 -2.29 16 3 C 0.32 3.44 7.85 -90.88 -0.71 2.72 16 4 N -0.55 -5.47 9.16 -13.50 -0.12 -5.60 16 5 C 0.38 3.32 7.83 -16.72 -0.13 3.19 16 6 O -0.47 -3.13 13.57 -18.23 -0.25 -3.38 16 7 C -0.23 -1.92 9.78 -39.14 -0.38 -2.31 16 8 C 0.19 1.93 6.18 -82.33 -0.51 1.42 16 9 C 0.17 1.88 6.02 -5.19 -0.03 1.84 16 10 N -0.73 -9.00 5.55 -61.48 -0.34 -9.34 16 11 C 0.54 9.10 7.85 -10.98 -0.09 9.01 16 12 O -0.51 -10.63 15.86 5.56 0.09 -10.54 16 13 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 14 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 15 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 16 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 18 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 19 Si 0.86 21.61 27.74 -169.99 -4.71 16.90 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.23 -5.90 6.74 56.52 0.38 -5.52 16 23 N -0.49 -5.71 10.33 -9.74 -0.10 -5.81 16 24 H 0.09 0.55 8.11 -51.91 -0.42 0.13 16 25 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.09 0.52 8.11 -51.91 -0.42 0.10 16 27 H 0.41 0.63 9.06 45.56 0.41 1.04 16 28 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.40 4.11 8.46 -40.82 -0.35 3.76 16 32 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 33 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -35.95 334.17 -7.41 -43.37 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -2.88 Total: 0.73 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.45 Total: 2.04 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.21 Total: -46.39 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.16 Total: -13.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -4.45 Total: -7.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.95 -7.41 -43.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332195390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.760 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds