Wall clock time and date at job start Tue Mar 31 2020 11:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76202 * 100.00198 * 2 1 4 4 N 1.32545 * 119.19277 * 359.97420 * 3 2 1 5 5 C 1.32707 * 120.63881 * 180.02562 * 4 3 2 6 6 O 1.35512 * 120.46990 * 180.02562 * 5 4 3 7 7 C 1.39459 * 119.07182 * 359.75656 * 5 4 3 8 8 C 1.38212 * 118.51840 * 0.48451 * 7 5 4 9 9 C 1.50699 * 120.36616 * 179.78327 * 8 7 5 10 10 N 1.46499 * 109.46700 * 94.72211 * 9 8 7 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 S 1.81008 * 109.46759 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99946 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00252 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00327 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99735 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47351 * 90.00094 * 19 17 15 21 21 H 1.48496 * 109.47299 * 210.00069 * 19 17 15 22 22 H 1.48507 * 109.47281 * 330.00181 * 19 17 15 23 23 N 1.32453 * 119.27181 * 359.51216 * 8 7 5 24 24 H 1.09006 * 109.47273 * 59.99959 * 1 2 3 25 25 H 1.08999 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47371 * 300.00506 * 1 2 3 27 27 H 0.96705 * 113.99617 * 89.99546 * 6 5 4 28 28 H 1.08000 * 120.74432 * 180.24764 * 7 5 4 29 29 H 1.08998 * 109.46743 * 334.72687 * 9 8 7 30 30 H 1.08994 * 109.47542 * 214.72546 * 9 8 7 31 31 H 0.97005 * 120.00261 * 0.02562 * 10 9 8 32 32 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 33 33 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 34 34 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0888 2.5729 -0.0005 5 6 1.2862 3.8852 -0.0010 6 8 0.2334 4.7385 -0.0011 7 6 2.5923 4.3739 0.0041 8 6 3.6360 3.4678 -0.0006 9 6 5.0637 3.9502 -0.0002 10 7 5.5641 3.9933 1.3760 11 6 6.8261 4.3978 1.6218 12 8 7.5472 4.7265 0.7037 13 6 7.3389 4.4478 3.0380 14 16 9.0537 5.0272 3.0385 15 6 9.3885 4.9907 4.7680 16 1 8.6225 4.6725 5.4597 17 6 10.6366 5.3709 5.2415 18 7 10.8868 5.3432 6.5335 19 14 11.9611 5.9219 4.0453 20 1 11.8659 7.3901 3.8431 21 1 13.2979 5.5840 4.5967 22 1 11.7727 5.2300 2.7448 23 7 3.3676 2.1708 -0.0001 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.0719 4.9863 0.8824 28 1 2.7841 5.4368 0.0079 29 1 5.1099 4.9487 -0.4350 30 1 5.6777 3.2688 -0.5890 31 1 4.9872 3.7307 2.1103 32 1 6.7244 5.1323 3.6228 33 1 7.2915 3.4514 3.4770 34 1 11.7589 5.6092 6.8644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332195390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:15 Heat of formation + Delta-G solvation = -56.755410 kcal Electronic energy + Delta-G solvation = -20144.945849 eV Core-core repulsion = 16715.866799 eV Total energy + Delta-G solvation = -3429.079051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33812 -40.64860 -38.78667 -36.52540 -34.66534 -34.34419 -32.82221 -31.25263 -29.87636 -28.10096 -27.70679 -25.87927 -23.92119 -21.93923 -20.42349 -19.88697 -19.20499 -18.35798 -17.93051 -17.43742 -17.06086 -16.96247 -16.62405 -16.52052 -15.79212 -15.54118 -15.26774 -14.96646 -14.81990 -14.50676 -14.36690 -14.18925 -13.52640 -13.43010 -13.32734 -13.20964 -12.99144 -12.66693 -12.17647 -11.94234 -11.83582 -11.47850 -11.26382 -11.15919 -11.02039 -10.63821 -10.52928 -10.28796 -8.98359 -8.91713 -8.50507 -6.21230 -0.54839 -0.36648 0.07423 0.99323 1.09616 1.32867 1.47574 1.51795 1.55866 1.99165 2.25905 2.31379 2.46945 2.71938 2.80035 2.87874 3.34733 3.72900 3.83020 3.98114 4.11152 4.22943 4.30103 4.34767 4.46347 4.47721 4.55167 4.88792 4.93642 5.19060 5.63511 5.71688 6.12708 6.31038 6.41131 6.59358 6.94642 7.08290 8.61864 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.002399 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.677795 B =11667.373690 C =12037.242117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.002 6.002 3 C 0.306 3.694 4 N -0.552 5.552 5 C 0.379 3.621 6 O -0.475 6.475 7 C -0.220 4.220 8 C 0.184 3.816 9 C 0.176 3.824 10 N -0.707 5.707 11 C 0.543 3.457 12 O -0.554 6.554 13 C -0.111 4.111 14 S -0.171 6.171 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.044 3.956 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.235 1.235 23 N -0.517 5.517 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.433 0.567 28 H 0.184 0.816 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.414 0.586 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.450 -6.290 -13.643 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.232 5.768 3 C -0.070 4.070 4 N -0.282 5.282 5 C 0.188 3.812 6 O -0.287 6.287 7 C -0.248 4.248 8 C 0.036 3.964 9 C 0.052 3.948 10 N -0.362 5.362 11 C 0.329 3.671 12 O -0.432 6.432 13 C -0.262 4.262 14 S 0.055 5.945 15 C -0.677 4.677 16 H 0.080 0.920 17 C -0.161 4.161 18 N -0.556 5.556 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.159 1.159 23 N -0.237 5.237 24 H 0.107 0.893 25 H 0.151 0.849 26 H 0.111 0.889 27 H 0.297 0.703 28 H 0.202 0.798 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.613 -7.681 -15.605 30.138 hybrid contribution -1.188 1.746 1.981 2.895 sum -25.801 -5.935 -13.625 29.775 Atomic orbital electron populations 1.23660 0.91519 1.08118 1.07138 1.86131 1.09576 0.91566 1.89562 1.25080 0.85874 1.01283 0.94718 1.68314 1.35864 1.04880 1.19139 1.19521 0.87113 0.85869 0.88713 1.84695 1.47350 1.60073 1.36535 1.23004 0.91741 1.04453 1.05593 1.21507 0.96284 0.87911 0.90685 1.20163 0.87297 1.03009 0.84311 1.45554 1.13044 1.68520 1.09057 1.19874 0.81450 0.75952 0.89844 1.90712 1.57127 1.48681 1.46630 1.23254 0.99126 1.06766 0.97084 1.84695 1.12380 1.87884 1.09496 1.22466 1.02596 1.51542 0.91048 0.91958 1.25579 0.99906 0.93989 0.96630 1.70016 1.24360 1.47201 1.13995 0.85860 0.79219 0.80367 0.80893 1.18572 1.18523 1.15931 1.68354 1.21485 1.17441 1.16413 0.89279 0.84890 0.88938 0.70293 0.79819 0.87295 0.89941 0.75000 0.86444 0.86994 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.62 113.37 1.09 -0.21 16 2 S 0.00 -0.04 22.89 -56.49 -1.29 -1.33 16 3 C 0.31 6.29 7.85 180.44 1.42 7.70 16 4 N -0.55 -10.19 9.16 -309.34 -2.83 -13.03 16 5 C 0.38 5.76 7.83 84.86 0.66 6.43 16 6 O -0.48 -4.96 13.57 -88.15 -1.20 -6.15 16 7 C -0.22 -3.09 9.78 22.56 0.22 -2.87 16 8 C 0.18 3.38 6.18 42.46 0.26 3.65 16 9 C 0.18 3.53 6.02 85.63 0.52 4.04 16 10 N -0.71 -16.01 5.55 -466.79 -2.59 -18.60 16 11 C 0.54 17.63 7.85 87.65 0.69 18.32 16 12 O -0.55 -22.34 15.86 -3.04 -0.05 -22.39 16 13 C -0.11 -4.03 6.16 71.24 0.44 -3.60 16 14 S -0.17 -8.46 18.55 -56.49 -1.05 -9.50 16 15 C -0.53 -30.43 10.04 67.95 0.68 -29.75 16 16 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 17 C 0.04 2.58 5.50 84.86 0.47 3.05 16 18 N -0.92 -55.63 13.97 21.65 0.30 -55.33 16 19 Si 0.91 44.58 27.74 68.60 1.90 46.48 16 20 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 23 N -0.52 -11.54 10.33 -184.73 -1.91 -13.45 16 24 H 0.09 0.94 8.11 -2.39 -0.02 0.92 16 25 H 0.13 0.60 8.14 -2.40 -0.02 0.58 16 26 H 0.09 0.90 8.11 -2.39 -0.02 0.88 16 27 H 0.43 0.02 9.06 -74.05 -0.67 -0.65 16 28 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.11 1.90 8.06 -2.39 -0.02 1.88 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.41 7.48 8.46 -92.70 -0.78 6.70 16 32 H 0.12 3.82 8.14 -2.40 -0.02 3.80 16 33 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 34 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.79 334.17 -2.59 -80.38 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -0.33 Total: 6.15 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.45 Total: 6.76 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -7.03 Total: -100.40 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.24 Total: -28.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -2.34 Total: -10.83 kcal Total: -77.79 -2.59 -80.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332195390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.622 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds