Wall clock time and date at job start Tue Mar 31 2020 11:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00064 * 2 1 4 4 S 1.65600 * 120.00049 * 179.97438 * 2 1 3 5 5 O 1.42091 * 106.40482 * 23.62577 * 4 2 1 6 6 O 1.42107 * 106.40277 * 250.70740 * 4 2 1 7 7 N 1.65599 * 107.21944 * 137.17067 * 4 2 1 8 8 C 1.36934 * 120.00465 * 57.64311 * 7 4 2 9 9 H 1.07995 * 120.00448 * 195.52402 * 8 7 4 10 10 C 1.38817 * 119.99868 * 15.51741 * 8 7 4 11 11 N 1.31614 * 119.99680 * 41.45540 * 10 8 7 12 12 Si 1.86802 * 120.00136 * 221.45822 * 10 8 7 13 13 H 1.48501 * 109.47138 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47327 * 119.99799 * 12 10 8 15 15 H 1.48498 * 109.46732 * 239.99792 * 12 10 8 16 16 C 1.46505 * 119.99710 * 237.64671 * 7 4 2 17 17 C 1.50701 * 109.46684 * 255.09074 * 16 7 4 18 18 C 1.33716 * 124.50798 * 85.53834 * 17 16 7 19 19 C 1.37609 * 115.09703 * 179.97438 * 18 17 16 20 20 C 1.36631 * 113.26803 * 359.97438 * 19 18 17 21 21 C 1.43202 * 125.45701 * 179.97438 * 20 19 18 22 22 N 9.68318 * 143.21504 * 197.61112 * 2 1 3 23 23 S 1.70610 * 124.51395 * 265.53454 * 17 16 7 24 24 H 1.08997 * 109.47215 * 274.81228 * 1 2 3 25 25 H 1.08996 * 109.47070 * 34.81795 * 1 2 3 26 26 H 1.08999 * 109.46999 * 154.81615 * 1 2 3 27 27 H 1.08999 * 109.47140 * 216.68180 * 3 2 1 28 28 H 1.08998 * 109.46919 * 336.67855 * 3 2 1 29 29 H 1.08996 * 109.46884 * 96.68460 * 3 2 1 30 30 H 0.97002 * 119.99998 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.47074 * 135.09666 * 16 7 4 32 32 H 1.08993 * 109.47081 * 15.09274 * 16 7 4 33 33 H 1.08003 * 122.45707 * 359.97438 * 18 17 16 34 34 H 1.08004 * 123.36688 * 180.26711 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4121 -2.4063 -0.5452 6 8 2.8837 -1.5559 1.2874 7 7 3.5427 -1.2791 -1.0747 8 6 4.4654 -0.2804 -0.9129 9 1 5.1239 -0.0164 -1.7272 10 6 4.5544 0.3928 0.2978 11 7 4.4678 -0.2738 1.4293 12 14 4.7969 2.2449 0.3210 13 1 4.8619 2.7532 -1.0728 14 1 3.6583 2.8845 1.0280 15 1 6.0627 2.5695 1.0264 16 6 3.6610 -2.2106 -2.1994 17 6 4.7716 -3.1915 -1.9244 18 6 4.6275 -4.3227 -1.2262 19 6 5.7712 -5.0763 -1.0933 20 6 6.8577 -4.5215 -1.7085 21 6 8.1748 -5.0829 -1.7336 22 7 9.2201 -5.5267 -1.7543 23 16 6.3800 -3.0065 -2.4624 24 1 -0.3633 0.0862 1.0240 25 1 -0.3633 0.8437 -0.5867 26 1 -0.3633 -0.9300 -0.4373 27 1 3.0929 1.1713 -0.6139 28 1 1.5619 2.0552 -0.4068 29 1 2.4827 1.5235 1.0206 30 1 4.5304 0.1966 2.2754 31 1 3.8847 -1.6544 -3.1098 32 1 2.7224 -2.7501 -2.3246 33 1 3.6826 -4.6231 -0.7979 34 1 5.8054 -6.0150 -0.5602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334807411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:07 Heat of formation + Delta-G solvation = 63.134232 kcal Electronic energy + Delta-G solvation = -22807.313681 eV Core-core repulsion = 19383.433435 eV Total energy + Delta-G solvation = -3423.880246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.04634 -36.50643 -36.12759 -35.54561 -34.97741 -34.12423 -32.31196 -29.89355 -27.54483 -26.48269 -24.62851 -23.74058 -22.51639 -20.53809 -19.22577 -17.94434 -17.33601 -16.22619 -15.92621 -15.89898 -15.30107 -14.52602 -14.42690 -14.26925 -13.83398 -13.66368 -13.34765 -13.08058 -12.78415 -12.68240 -12.59765 -12.13683 -12.05361 -12.02605 -11.90416 -11.66879 -11.36324 -11.22522 -10.66100 -10.53350 -10.37765 -10.28178 -10.22541 -10.04650 -9.75023 -9.16103 -8.35710 -8.16445 -8.10459 -7.96342 -6.34007 -3.80700 0.78458 1.54246 1.99829 2.28467 2.77994 3.06281 3.12425 3.19012 3.22641 3.55483 3.95532 4.20207 4.22307 4.41535 4.86581 5.21711 5.57061 5.61107 5.70526 5.80983 5.88526 5.98379 6.06366 6.18180 6.25194 6.29250 6.45249 6.54140 6.60470 6.64979 6.77704 6.86098 7.39763 7.59087 7.62663 8.12022 8.73848 9.17638 10.34380 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.005887 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.012288 B = 4755.450079 C = 5624.845146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.015 6.015 3 C 0.055 3.945 4 S 2.711 3.289 5 O -1.048 7.048 6 O -0.921 6.921 7 N -0.846 5.846 8 C -0.340 4.340 9 H 0.097 0.903 10 C 0.005 3.995 11 N -0.701 5.701 12 Si 0.878 3.122 13 H -0.262 1.262 14 H -0.270 1.270 15 H -0.287 1.287 16 C 0.189 3.811 17 C -0.165 4.165 18 C -0.158 4.158 19 C -0.047 4.047 20 C -0.204 4.204 21 C 0.297 3.703 22 N -0.434 5.434 23 S 0.268 5.732 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.273 0.727 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 0.058 -6.043 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.851 5.851 3 C -0.089 4.089 4 S 2.729 3.271 5 O -1.032 7.032 6 O -0.901 6.901 7 N -0.677 5.677 8 C -0.476 4.476 9 H 0.115 0.885 10 C -0.211 4.211 11 N -0.336 5.336 12 Si 0.701 3.299 13 H -0.186 1.186 14 H -0.196 1.196 15 H -0.214 1.214 16 C 0.059 3.941 17 C -0.289 4.289 18 C -0.189 4.189 19 C -0.084 4.084 20 C -0.325 4.325 21 C -0.017 4.017 22 N -0.112 5.112 23 S 0.536 5.464 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.320 -0.316 -6.145 6.293 hybrid contribution -1.165 0.527 1.078 1.672 sum -2.484 0.211 -5.067 5.647 Atomic orbital electron populations 1.21364 0.81655 1.02431 1.00137 1.58391 1.12801 1.22935 1.90994 1.22995 0.98147 0.85780 1.02012 1.07070 0.71645 0.72501 0.75896 1.93327 1.67125 1.61671 1.81038 1.93808 1.72655 1.84582 1.39028 1.53278 1.34303 1.37098 1.43000 1.18635 1.17999 1.12616 0.98302 0.88504 1.25654 0.99379 1.00919 0.95134 1.70956 1.30526 1.34165 0.97917 0.87241 0.77655 0.85677 0.79330 1.18611 1.19573 1.21425 1.19652 0.94715 0.88589 0.91116 1.24951 1.00959 0.99558 1.03386 1.19876 1.00198 0.95560 1.03243 1.20573 0.90167 1.00279 0.97387 1.20371 0.91044 1.03858 1.17268 1.24393 0.91391 0.93042 0.92906 1.81219 1.10769 1.09053 1.10161 1.82927 1.00885 1.14529 1.48039 0.94554 0.92673 0.90858 0.86278 0.93800 0.93765 0.91492 0.91047 0.88058 0.83865 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.72 59.84 0.64 2.20 16 2 N -1.01 -21.10 3.62 -129.21 -0.47 -21.57 16 3 C 0.06 1.11 7.10 59.85 0.42 1.53 16 4 S 2.71 62.98 5.58 -107.50 -0.60 62.38 16 5 O -1.05 -24.52 14.98 -57.17 -0.86 -25.38 16 6 O -0.92 -24.67 13.66 -57.17 -0.78 -25.45 16 7 N -0.85 -18.23 2.99 -61.08 -0.18 -18.42 16 8 C -0.34 -7.58 7.88 -15.06 -0.12 -7.70 16 9 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 10 C 0.01 0.12 2.80 -17.43 -0.05 0.07 16 11 N -0.70 -17.98 9.41 55.49 0.52 -17.46 16 12 Si 0.88 17.61 25.04 -169.99 -4.26 13.35 16 13 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 14 H -0.27 -5.24 5.96 56.52 0.34 -4.90 16 15 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 16 C 0.19 3.38 6.12 -5.19 -0.03 3.34 16 17 C -0.16 -2.80 5.65 -35.89 -0.20 -3.01 16 18 C -0.16 -2.61 10.00 -41.40 -0.41 -3.03 16 19 C -0.05 -0.69 10.24 -40.39 -0.41 -1.10 16 20 C -0.20 -3.10 6.32 -38.24 -0.24 -3.34 16 21 C 0.30 4.68 15.83 -22.48 -0.36 4.33 16 22 N -0.43 -7.37 18.54 41.83 0.78 -6.60 16 23 S 0.27 4.04 23.01 -107.50 -2.47 1.56 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 26 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 27 H 0.12 2.46 2.29 -51.93 -0.12 2.34 16 28 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 29 H 0.04 0.93 5.68 -51.93 -0.30 0.63 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.76 6.67 -51.93 -0.35 1.41 16 33 H 0.14 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.15 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -28.92 305.79 -7.73 -36.65 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.25 Total: 3.04 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.76 Total: -6.71 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.65 Total: -64.05 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.64 Total: -50.83 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -4.26 Total: 13.35 kcal Atomic # 16 Polarization: 67.01 SS G_CDS: -3.07 Total: 63.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.92 -7.73 -36.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334807411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.782 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds