Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00064 * 2 1 4 4 S 1.65600 * 120.00049 * 179.97438 * 2 1 3 5 5 O 1.42091 * 106.40482 * 23.62577 * 4 2 1 6 6 O 1.42107 * 106.40277 * 250.70740 * 4 2 1 7 7 N 1.65599 * 107.21944 * 137.17067 * 4 2 1 8 8 C 1.36934 * 120.00465 * 57.64311 * 7 4 2 9 9 H 1.07995 * 120.00448 * 195.52402 * 8 7 4 10 10 C 1.38817 * 119.99868 * 15.51741 * 8 7 4 11 11 N 1.31614 * 119.99680 * 41.45540 * 10 8 7 12 12 Si 1.86802 * 120.00136 * 221.45822 * 10 8 7 13 13 H 1.48501 * 109.47138 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47327 * 119.99799 * 12 10 8 15 15 H 1.48498 * 109.46732 * 239.99792 * 12 10 8 16 16 C 1.46505 * 119.99710 * 237.64671 * 7 4 2 17 17 C 1.50701 * 109.46684 * 255.09074 * 16 7 4 18 18 C 1.33716 * 124.50798 * 85.53834 * 17 16 7 19 19 C 1.37609 * 115.09703 * 179.97438 * 18 17 16 20 20 C 1.36631 * 113.26803 * 359.97438 * 19 18 17 21 21 C 1.43202 * 125.45701 * 179.97438 * 20 19 18 22 22 N 9.68318 * 143.21504 * 197.61112 * 2 1 3 23 23 S 1.70610 * 124.51395 * 265.53454 * 17 16 7 24 24 H 1.08997 * 109.47215 * 274.81228 * 1 2 3 25 25 H 1.08996 * 109.47070 * 34.81795 * 1 2 3 26 26 H 1.08999 * 109.46999 * 154.81615 * 1 2 3 27 27 H 1.08999 * 109.47140 * 216.68180 * 3 2 1 28 28 H 1.08998 * 109.46919 * 336.67855 * 3 2 1 29 29 H 1.08996 * 109.46884 * 96.68460 * 3 2 1 30 30 H 0.97002 * 119.99998 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.47074 * 135.09666 * 16 7 4 32 32 H 1.08993 * 109.47081 * 15.09274 * 16 7 4 33 33 H 1.08003 * 122.45707 * 359.97438 * 18 17 16 34 34 H 1.08004 * 123.36688 * 180.26711 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4121 -2.4063 -0.5452 6 8 2.8837 -1.5559 1.2874 7 7 3.5427 -1.2791 -1.0747 8 6 4.4654 -0.2804 -0.9129 9 1 5.1239 -0.0164 -1.7272 10 6 4.5544 0.3928 0.2978 11 7 4.4678 -0.2738 1.4293 12 14 4.7969 2.2449 0.3210 13 1 4.8619 2.7532 -1.0728 14 1 3.6583 2.8845 1.0280 15 1 6.0627 2.5695 1.0264 16 6 3.6610 -2.2106 -2.1994 17 6 4.7716 -3.1915 -1.9244 18 6 4.6275 -4.3227 -1.2262 19 6 5.7712 -5.0763 -1.0933 20 6 6.8577 -4.5215 -1.7085 21 6 8.1748 -5.0829 -1.7336 22 7 9.2201 -5.5267 -1.7543 23 16 6.3800 -3.0065 -2.4624 24 1 -0.3633 0.0862 1.0240 25 1 -0.3633 0.8437 -0.5867 26 1 -0.3633 -0.9300 -0.4373 27 1 3.0929 1.1713 -0.6139 28 1 1.5619 2.0552 -0.4068 29 1 2.4827 1.5235 1.0206 30 1 4.5304 0.1966 2.2754 31 1 3.8847 -1.6544 -3.1098 32 1 2.7224 -2.7501 -2.3246 33 1 3.6826 -4.6231 -0.7979 34 1 5.8054 -6.0150 -0.5602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334807411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = 43.760677 kcal Electronic energy + Delta-G solvation = -22808.153782 eV Core-core repulsion = 19383.433435 eV Total energy + Delta-G solvation = -3424.720346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.34167 -38.05058 -37.68856 -37.14095 -36.48135 -35.97664 -33.94674 -31.32122 -29.02177 -27.91620 -26.19944 -25.22873 -23.90420 -21.84136 -20.90550 -19.27401 -18.97784 -17.93061 -17.49992 -17.18595 -16.99591 -16.07469 -15.88128 -15.71153 -15.22145 -15.11200 -14.78962 -14.57594 -14.29930 -14.12300 -13.99615 -13.66515 -13.51873 -13.42419 -13.30640 -13.14012 -12.98686 -12.66441 -12.34146 -12.06687 -12.01162 -11.83379 -11.75345 -11.60987 -11.41134 -10.80001 -9.84216 -9.65335 -9.53156 -9.37810 -8.07842 -5.54971 -0.49287 0.25794 0.37471 1.01235 1.47761 1.49296 1.58569 1.67581 1.85999 2.28918 2.34064 2.59113 2.70482 2.93643 3.20044 3.90911 4.17614 4.29007 4.41487 4.42447 4.53845 4.59955 4.63016 4.78634 4.86746 4.91107 5.01773 5.06191 5.18340 5.26867 5.31051 5.46602 5.65737 6.05343 6.36213 6.38168 7.05614 7.47048 8.61261 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.005887 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.012288 B = 4755.450079 C = 5624.845146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.023 6.023 3 C 0.052 3.948 4 S 2.709 3.291 5 O -1.060 7.060 6 O -0.963 6.963 7 N -0.852 5.852 8 C -0.337 4.337 9 H 0.110 0.890 10 C -0.028 4.028 11 N -0.746 5.746 12 Si 0.926 3.074 13 H -0.240 1.240 14 H -0.262 1.262 15 H -0.301 1.301 16 C 0.182 3.818 17 C -0.188 4.188 18 C -0.168 4.168 19 C -0.042 4.042 20 C -0.208 4.208 21 C 0.312 3.688 22 N -0.454 5.454 23 S 0.303 5.697 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 1.078 -7.501 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.861 5.861 3 C -0.092 4.092 4 S 2.728 3.272 5 O -1.044 7.044 6 O -0.944 6.944 7 N -0.684 5.684 8 C -0.473 4.473 9 H 0.128 0.872 10 C -0.240 4.240 11 N -0.383 5.383 12 Si 0.748 3.252 13 H -0.162 1.162 14 H -0.188 1.188 15 H -0.228 1.228 16 C 0.053 3.947 17 C -0.312 4.312 18 C -0.199 4.199 19 C -0.079 4.079 20 C -0.329 4.329 21 C -0.002 4.002 22 N -0.133 5.133 23 S 0.572 5.428 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.156 0.844 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.364 0.703 -7.639 7.791 hybrid contribution -1.159 0.155 1.465 1.875 sum -2.523 0.857 -6.173 6.724 Atomic orbital electron populations 1.21596 0.79704 1.03711 1.01337 1.58259 1.14326 1.22524 1.90947 1.22987 0.98776 0.86323 1.01154 1.07038 0.71743 0.72910 0.75480 1.93295 1.67486 1.62579 1.81031 1.93777 1.73611 1.85482 1.41484 1.53179 1.33484 1.37981 1.43713 1.18946 1.17589 1.12582 0.98158 0.87230 1.26357 0.98968 1.03957 0.94737 1.71062 1.33367 1.35529 0.98325 0.86476 0.77036 0.81383 0.80332 1.16240 1.18753 1.22836 1.19873 0.95302 0.88579 0.90904 1.24968 1.02020 0.99840 1.04338 1.20019 1.00701 0.95917 1.03272 1.20779 0.89206 1.00973 0.96953 1.20436 0.90889 1.04180 1.17433 1.24327 0.91164 0.92462 0.92249 1.81241 1.11385 1.09764 1.10904 1.82728 0.99051 1.13914 1.47114 0.93794 0.89386 0.91239 0.86814 0.90502 0.95338 0.92263 0.88348 0.88094 0.84443 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.68 10.72 127.77 1.37 4.05 16 2 N -1.02 -41.36 3.62 -562.71 -2.04 -43.40 16 3 C 0.05 1.98 7.10 127.77 0.91 2.89 16 4 S 2.71 125.94 5.58 -56.49 -0.32 125.63 16 5 O -1.06 -49.76 14.98 -128.00 -1.92 -51.68 16 6 O -0.96 -52.83 13.66 -128.00 -1.75 -54.57 16 7 N -0.85 -36.00 2.99 -347.17 -1.04 -37.04 16 8 C -0.34 -14.56 7.88 84.04 0.66 -13.90 16 9 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 10 C -0.03 -1.26 2.80 84.86 0.24 -1.02 16 11 N -0.75 -38.84 9.41 21.65 0.20 -38.64 16 12 Si 0.93 35.05 25.04 68.60 1.72 36.77 16 13 H -0.24 -8.13 7.11 99.48 0.71 -7.42 16 14 H -0.26 -9.52 5.96 99.48 0.59 -8.93 16 15 H -0.30 -11.97 7.11 99.48 0.71 -11.26 16 16 C 0.18 6.28 6.12 85.63 0.52 6.80 16 17 C -0.19 -6.19 5.65 24.66 0.14 -6.05 16 18 C -0.17 -5.43 10.00 21.09 0.21 -5.21 16 19 C -0.04 -1.18 10.24 21.74 0.22 -0.96 16 20 C -0.21 -5.96 6.32 23.14 0.15 -5.81 16 21 C 0.31 9.33 15.83 88.34 1.40 10.72 16 22 N -0.45 -14.82 18.54 19.00 0.35 -14.47 16 23 S 0.30 8.57 23.01 -56.49 -1.30 7.27 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.25 7.93 -2.39 -0.02 2.23 16 26 H 0.07 2.29 6.92 -2.39 -0.02 2.28 16 27 H 0.11 4.46 2.29 -2.39 -0.01 4.45 16 28 H 0.08 2.35 7.87 -2.39 -0.02 2.33 16 29 H 0.03 1.16 5.68 -2.39 -0.01 1.14 16 30 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 31 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.10 3.44 6.67 -2.39 -0.02 3.43 16 33 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 34 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -61.65 305.79 0.77 -60.88 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.04 Total: 17.74 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.82 Total: -8.49 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -2.52 Total: -133.55 kcal Atomic # 8 Polarization: -102.58 SS G_CDS: -3.67 Total: -106.25 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 1.72 Total: 36.77 kcal Atomic # 16 Polarization: 134.51 SS G_CDS: -1.62 Total: 132.90 kcal Total: -61.65 0.77 -60.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334807411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.637 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds