Wall clock time and date at job start Tue Mar 31 2020 10:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76194 * 102.99741 * 2 1 4 4 C 1.38265 * 123.55192 * 0.04093 * 3 2 1 5 5 C 1.33489 * 115.10352 * 179.97438 * 4 3 2 6 6 S 1.70556 * 111.27264 * 359.97438 * 5 4 3 7 7 C 1.37768 * 123.54605 * 180.02562 * 3 2 1 8 8 C 1.41303 * 125.49479 * 0.02562 * 7 3 2 9 9 O 1.21854 * 120.00491 * 352.48112 * 8 7 3 10 10 N 1.34782 * 119.99818 * 172.47857 * 8 7 3 11 11 C 1.36929 * 119.99946 * 3.91304 * 10 8 7 12 12 H 1.07998 * 119.99766 * 306.40749 * 11 10 8 13 13 C 1.38941 * 119.99930 * 126.41074 * 11 10 8 14 14 N 1.31442 * 119.99765 * 182.92271 * 13 11 10 15 15 Si 1.86793 * 120.00314 * 2.91973 * 13 11 10 16 16 H 1.48504 * 109.47255 * 94.33050 * 15 13 11 17 17 H 1.48500 * 109.47705 * 214.32951 * 15 13 11 18 18 H 1.48498 * 109.47262 * 334.33456 * 15 13 11 19 19 C 1.46494 * 120.00228 * 183.91513 * 10 8 7 20 20 C 1.52995 * 109.47444 * 84.57363 * 19 10 8 21 21 C 1.50706 * 109.47339 * 180.02562 * 20 19 10 22 22 O 1.20824 * 119.99825 * 0.02562 * 21 20 19 23 23 O 1.34226 * 120.00009 * 180.02562 * 21 20 19 24 24 H 1.09001 * 109.47212 * 60.00235 * 1 2 3 25 25 H 1.09005 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47207 * 299.99692 * 1 2 3 27 27 H 1.08004 * 122.44687 * 359.97438 * 4 3 2 28 28 H 1.07997 * 124.36516 * 180.26180 * 5 4 3 29 29 H 0.97001 * 120.00362 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47417 * 204.57940 * 19 10 8 31 31 H 1.09003 * 109.47118 * 324.57724 * 19 10 8 32 32 H 1.09001 * 109.47308 * 300.00204 * 20 19 10 33 33 H 1.09000 * 109.47381 * 59.99938 * 20 19 10 34 34 H 0.96697 * 117.00377 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2594 2.7206 0.0008 5 6 1.7475 3.9630 0.0012 6 16 3.4530 3.9579 0.0013 7 6 3.5003 2.2004 -0.0005 8 6 4.6724 1.4111 -0.0016 9 8 4.5936 0.2029 0.1359 10 7 5.8776 1.9947 -0.1548 11 6 5.9734 3.3586 -0.2290 12 1 5.3824 3.9029 -0.9506 13 6 6.8311 4.0421 0.6241 14 7 6.8807 5.3552 0.5924 15 14 7.9135 3.0951 1.8160 16 1 9.2482 2.8738 1.2038 17 1 8.0676 3.8741 3.0709 18 1 7.2854 1.7845 2.1209 19 6 7.0851 1.1698 -0.2420 20 6 7.2807 0.7029 -1.6858 21 6 8.5226 -0.1462 -1.7754 22 8 9.1831 -0.3567 -0.7859 23 8 8.8948 -0.6685 -2.9545 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1992 2.5144 0.0011 28 1 1.1406 4.8564 0.0059 29 1 7.4791 5.8326 1.1882 30 1 7.9491 1.7561 0.0704 31 1 6.9802 0.3020 0.4092 32 1 6.4167 0.1165 -1.9983 33 1 7.3856 1.5706 -2.3372 34 1 9.6986 -1.2060 -2.9625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599826355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:01 Heat of formation + Delta-G solvation = -82.737746 kcal Electronic energy + Delta-G solvation = -22013.275723 eV Core-core repulsion = 18550.777242 eV Total energy + Delta-G solvation = -3462.498481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07500 -39.11955 -36.86398 -35.96303 -35.08705 -32.64523 -31.21105 -29.17913 -28.66303 -25.42887 -25.29526 -23.44350 -21.09668 -20.05619 -19.09856 -18.25259 -17.89450 -16.75192 -16.49295 -15.83714 -15.63276 -15.11063 -14.60354 -14.49646 -14.37947 -13.75715 -13.48151 -13.20677 -12.97371 -12.92136 -12.77963 -12.47129 -12.34799 -11.98511 -11.86490 -11.49727 -11.42788 -11.31282 -10.98451 -10.42245 -10.34597 -9.98762 -9.91559 -9.84238 -9.05941 -8.85138 -8.75022 -7.96290 -7.87473 -6.80746 -6.61247 -4.63557 1.24742 1.89292 2.46645 2.59646 2.89779 2.93965 3.07535 3.14088 3.21757 3.24757 3.26263 3.94008 4.15659 4.38430 4.66520 5.29247 5.30305 5.30798 5.44114 5.57998 5.67246 5.75257 5.87134 5.99163 6.07896 6.22279 6.40634 6.49426 6.68612 6.70261 6.79233 7.20276 7.77482 7.84328 8.11031 8.63011 9.03104 9.42581 10.27276 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.006263 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.737354 B = 4469.582491 C = 6024.131191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 S -0.027 6.027 3 C -0.072 4.072 4 C -0.165 4.165 5 C -0.318 4.318 6 S 0.370 5.630 7 C -0.240 4.240 8 C 0.560 3.440 9 O -0.565 6.565 10 N -0.472 5.472 11 C -0.356 4.356 12 H 0.118 0.882 13 C 0.087 3.913 14 N -0.839 5.839 15 Si 0.881 3.119 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.252 1.252 19 C 0.123 3.877 20 C -0.126 4.126 21 C 0.485 3.515 22 O -0.520 6.520 23 O -0.520 6.520 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.283 0.717 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 -3.600 -3.692 7.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 S 0.211 5.789 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.456 4.456 6 S 0.646 5.354 7 C -0.369 4.369 8 C 0.352 3.648 9 O -0.450 6.450 10 N -0.194 5.194 11 C -0.491 4.491 12 H 0.135 0.865 13 C -0.127 4.127 14 N -0.470 5.470 15 Si 0.707 3.293 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.176 1.176 19 C -0.001 4.001 20 C -0.165 4.165 21 C 0.327 3.673 22 O -0.408 6.408 23 O -0.331 6.331 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.166 0.834 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.353 -3.619 -3.256 5.911 hybrid contribution -0.938 -0.383 0.516 1.137 sum -4.291 -4.002 -2.740 6.476 Atomic orbital electron populations 1.23823 1.00193 1.05882 1.04741 1.86202 1.00036 1.00888 1.91761 1.21225 0.94339 0.97901 1.06567 1.19540 0.98794 0.91573 1.10078 1.26726 1.10491 1.00698 1.07716 1.85359 0.90937 0.98149 1.60964 1.23145 0.95381 0.99601 1.18802 1.15990 0.82931 0.86937 0.78905 1.90725 1.86426 1.14032 1.53803 1.43467 1.03769 1.06284 1.65923 1.18954 1.29198 0.79355 1.21567 0.86533 1.25567 0.96468 0.95295 0.95360 1.69644 1.34852 1.06461 1.36053 0.86786 0.80996 0.81049 0.80455 1.19215 1.20981 1.17606 1.21384 0.89197 0.96160 0.93328 1.21818 0.93133 0.99496 1.02043 1.23693 0.86397 0.77257 0.79907 1.90702 1.54644 1.57969 1.37486 1.84578 1.47601 1.64325 1.36629 0.90706 0.88332 0.90656 0.86389 0.83399 0.90612 0.91002 0.90073 0.87247 0.86902 0.73833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.34 101.05 0.94 -1.32 16 2 S -0.03 -0.50 20.55 -107.50 -2.21 -2.71 16 3 C -0.07 -1.42 6.17 -39.74 -0.25 -1.66 16 4 C -0.17 -2.87 9.47 -41.23 -0.39 -3.26 16 5 C -0.32 -5.40 10.89 29.07 0.32 -5.08 16 6 S 0.37 7.23 18.22 -107.50 -1.96 5.28 16 7 C -0.24 -5.21 6.15 -38.59 -0.24 -5.45 16 8 C 0.56 13.12 7.38 -15.09 -0.11 13.01 16 9 O -0.56 -13.94 14.46 5.05 0.07 -13.87 16 10 N -0.47 -10.75 2.08 -118.15 -0.25 -11.00 16 11 C -0.36 -8.29 7.06 -15.01 -0.11 -8.40 16 12 H 0.12 2.77 5.82 -33.43 -0.19 2.57 16 13 C 0.09 2.06 5.49 -17.46 -0.10 1.97 16 14 N -0.84 -20.33 13.96 55.50 0.77 -19.56 16 15 Si 0.88 19.70 24.79 -169.99 -4.21 15.49 16 16 H -0.27 -5.90 7.08 56.52 0.40 -5.50 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.25 -5.87 6.36 56.52 0.36 -5.51 16 19 C 0.12 2.61 2.74 -4.05 -0.01 2.60 16 20 C -0.13 -2.23 6.10 -27.88 -0.17 -2.40 16 21 C 0.48 8.05 8.33 36.01 0.30 8.35 16 22 O -0.52 -10.12 16.74 -18.75 -0.31 -10.43 16 23 O -0.52 -6.69 13.42 -39.25 -0.53 -7.22 16 24 H 0.07 0.88 7.97 -51.92 -0.41 0.47 16 25 H 0.10 1.05 8.14 -51.92 -0.42 0.62 16 26 H 0.07 0.90 7.96 -51.92 -0.41 0.49 16 27 H 0.12 1.75 6.71 -52.48 -0.35 1.40 16 28 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 29 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.07 1.57 3.95 -51.93 -0.21 1.37 16 31 H 0.08 1.82 7.43 -51.93 -0.39 1.44 16 32 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 33 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.40 3.27 9.10 45.56 0.41 3.68 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -28.90 313.59 -6.12 -35.03 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.42 Total: 5.90 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.19 Total: -1.63 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.53 Total: -30.56 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.77 Total: -31.52 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.21 Total: 15.49 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -4.17 Total: 2.57 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.90 -6.12 -35.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599826355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.712 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds