Wall clock time and date at job start Tue Mar 31 2020 10:31:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81403 * 1
3 3 C 1.76194 * 102.99741 * 2 1
4 4 C 1.38265 * 123.55192 * 0.04093 * 3 2 1
5 5 C 1.33489 * 115.10352 * 179.97438 * 4 3 2
6 6 S 1.70556 * 111.27264 * 359.97438 * 5 4 3
7 7 C 1.37768 * 123.54605 * 180.02562 * 3 2 1
8 8 C 1.41303 * 125.49479 * 0.02562 * 7 3 2
9 9 O 1.21854 * 120.00491 * 352.48112 * 8 7 3
10 10 N 1.34782 * 119.99818 * 172.47857 * 8 7 3
11 11 C 1.36929 * 119.99946 * 3.91304 * 10 8 7
12 12 H 1.07998 * 119.99766 * 306.40749 * 11 10 8
13 13 C 1.38941 * 119.99930 * 126.41074 * 11 10 8
14 14 N 1.31442 * 119.99765 * 182.92271 * 13 11 10
15 15 Si 1.86793 * 120.00314 * 2.91973 * 13 11 10
16 16 H 1.48504 * 109.47255 * 94.33050 * 15 13 11
17 17 H 1.48500 * 109.47705 * 214.32951 * 15 13 11
18 18 H 1.48498 * 109.47262 * 334.33456 * 15 13 11
19 19 C 1.46494 * 120.00228 * 183.91513 * 10 8 7
20 20 C 1.52995 * 109.47444 * 84.57363 * 19 10 8
21 21 C 1.50706 * 109.47339 * 180.02562 * 20 19 10
22 22 O 1.20824 * 119.99825 * 0.02562 * 21 20 19
23 23 O 1.34226 * 120.00009 * 180.02562 * 21 20 19
24 24 H 1.09001 * 109.47212 * 60.00235 * 1 2 3
25 25 H 1.09005 * 109.47068 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.47207 * 299.99692 * 1 2 3
27 27 H 1.08004 * 122.44687 * 359.97438 * 4 3 2
28 28 H 1.07997 * 124.36516 * 180.26180 * 5 4 3
29 29 H 0.97001 * 120.00362 * 179.97438 * 14 13 11
30 30 H 1.08995 * 109.47417 * 204.57940 * 19 10 8
31 31 H 1.09003 * 109.47118 * 324.57724 * 19 10 8
32 32 H 1.09001 * 109.47308 * 300.00204 * 20 19 10
33 33 H 1.09000 * 109.47381 * 59.99938 * 20 19 10
34 34 H 0.96697 * 117.00377 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7168 0.0000
4 6 1.2594 2.7206 0.0008
5 6 1.7475 3.9630 0.0012
6 16 3.4530 3.9579 0.0013
7 6 3.5003 2.2004 -0.0005
8 6 4.6724 1.4111 -0.0016
9 8 4.5936 0.2029 0.1359
10 7 5.8776 1.9947 -0.1548
11 6 5.9734 3.3586 -0.2290
12 1 5.3824 3.9029 -0.9506
13 6 6.8311 4.0421 0.6241
14 7 6.8807 5.3552 0.5924
15 14 7.9135 3.0951 1.8160
16 1 9.2482 2.8738 1.2038
17 1 8.0676 3.8741 3.0709
18 1 7.2854 1.7845 2.1209
19 6 7.0851 1.1698 -0.2420
20 6 7.2807 0.7029 -1.6858
21 6 8.5226 -0.1462 -1.7754
22 8 9.1831 -0.3567 -0.7859
23 8 8.8948 -0.6685 -2.9545
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3633 0.5138 0.8900
27 1 0.1992 2.5144 0.0011
28 1 1.1406 4.8564 0.0059
29 1 7.4791 5.8326 1.1882
30 1 7.9491 1.7561 0.0704
31 1 6.9802 0.3020 0.4092
32 1 6.4167 0.1165 -1.9983
33 1 7.3856 1.5706 -2.3372
34 1 9.6986 -1.2060 -2.9625
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001599826355.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:01
Heat of formation + Delta-G solvation = -82.737746 kcal
Electronic energy + Delta-G solvation = -22013.275723 eV
Core-core repulsion = 18550.777242 eV
Total energy + Delta-G solvation = -3462.498481 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 315.043 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.07500 -39.11955 -36.86398 -35.96303 -35.08705 -32.64523 -31.21105 -29.17913
-28.66303 -25.42887 -25.29526 -23.44350 -21.09668 -20.05619 -19.09856 -18.25259
-17.89450 -16.75192 -16.49295 -15.83714 -15.63276 -15.11063 -14.60354 -14.49646
-14.37947 -13.75715 -13.48151 -13.20677 -12.97371 -12.92136 -12.77963 -12.47129
-12.34799 -11.98511 -11.86490 -11.49727 -11.42788 -11.31282 -10.98451 -10.42245
-10.34597 -9.98762 -9.91559 -9.84238 -9.05941 -8.85138 -8.75022 -7.96290
-7.87473 -6.80746 -6.61247 -4.63557 1.24742 1.89292 2.46645 2.59646
2.89779 2.93965 3.07535 3.14088 3.21757 3.24757 3.26263 3.94008
4.15659 4.38430 4.66520 5.29247 5.30305 5.30798 5.44114 5.57998
5.67246 5.75257 5.87134 5.99163 6.07896 6.22279 6.40634 6.49426
6.68612 6.70261 6.79233 7.20276 7.77482 7.84328 8.11031 8.63011
9.03104 9.42581 10.27276
Molecular weight = 315.04amu
Principal moments of inertia in cm(-1)
A = 0.012515 B = 0.006263 C = 0.004647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2236.737354 B = 4469.582491 C = 6024.131191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 S -0.027 6.027
3 C -0.072 4.072
4 C -0.165 4.165
5 C -0.318 4.318
6 S 0.370 5.630
7 C -0.240 4.240
8 C 0.560 3.440
9 O -0.565 6.565
10 N -0.472 5.472
11 C -0.356 4.356
12 H 0.118 0.882
13 C 0.087 3.913
14 N -0.839 5.839
15 Si 0.881 3.119
16 H -0.266 1.266
17 H -0.283 1.283
18 H -0.252 1.252
19 C 0.123 3.877
20 C -0.126 4.126
21 C 0.485 3.515
22 O -0.520 6.520
23 O -0.520 6.520
24 H 0.074 0.926
25 H 0.098 0.902
26 H 0.074 0.926
27 H 0.118 0.882
28 H 0.148 0.852
29 H 0.283 0.717
30 H 0.072 0.928
31 H 0.081 0.919
32 H 0.109 0.891
33 H 0.113 0.887
34 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.817 -3.600 -3.692 7.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.346 4.346
2 S 0.211 5.789
3 C -0.200 4.200
4 C -0.200 4.200
5 C -0.456 4.456
6 S 0.646 5.354
7 C -0.369 4.369
8 C 0.352 3.648
9 O -0.450 6.450
10 N -0.194 5.194
11 C -0.491 4.491
12 H 0.135 0.865
13 C -0.127 4.127
14 N -0.470 5.470
15 Si 0.707 3.293
16 H -0.192 1.192
17 H -0.210 1.210
18 H -0.176 1.176
19 C -0.001 4.001
20 C -0.165 4.165
21 C 0.327 3.673
22 O -0.408 6.408
23 O -0.331 6.331
24 H 0.093 0.907
25 H 0.117 0.883
26 H 0.093 0.907
27 H 0.136 0.864
28 H 0.166 0.834
29 H 0.094 0.906
30 H 0.090 0.910
31 H 0.099 0.901
32 H 0.128 0.872
33 H 0.131 0.869
34 H 0.262 0.738
Dipole moment (debyes) X Y Z Total
from point charges -3.353 -3.619 -3.256 5.911
hybrid contribution -0.938 -0.383 0.516 1.137
sum -4.291 -4.002 -2.740 6.476
Atomic orbital electron populations
1.23823 1.00193 1.05882 1.04741 1.86202 1.00036 1.00888 1.91761
1.21225 0.94339 0.97901 1.06567 1.19540 0.98794 0.91573 1.10078
1.26726 1.10491 1.00698 1.07716 1.85359 0.90937 0.98149 1.60964
1.23145 0.95381 0.99601 1.18802 1.15990 0.82931 0.86937 0.78905
1.90725 1.86426 1.14032 1.53803 1.43467 1.03769 1.06284 1.65923
1.18954 1.29198 0.79355 1.21567 0.86533 1.25567 0.96468 0.95295
0.95360 1.69644 1.34852 1.06461 1.36053 0.86786 0.80996 0.81049
0.80455 1.19215 1.20981 1.17606 1.21384 0.89197 0.96160 0.93328
1.21818 0.93133 0.99496 1.02043 1.23693 0.86397 0.77257 0.79907
1.90702 1.54644 1.57969 1.37486 1.84578 1.47601 1.64325 1.36629
0.90706 0.88332 0.90656 0.86389 0.83399 0.90612 0.91002 0.90073
0.87247 0.86902 0.73833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.26 9.34 101.05 0.94 -1.32 16
2 S -0.03 -0.50 20.55 -107.50 -2.21 -2.71 16
3 C -0.07 -1.42 6.17 -39.74 -0.25 -1.66 16
4 C -0.17 -2.87 9.47 -41.23 -0.39 -3.26 16
5 C -0.32 -5.40 10.89 29.07 0.32 -5.08 16
6 S 0.37 7.23 18.22 -107.50 -1.96 5.28 16
7 C -0.24 -5.21 6.15 -38.59 -0.24 -5.45 16
8 C 0.56 13.12 7.38 -15.09 -0.11 13.01 16
9 O -0.56 -13.94 14.46 5.05 0.07 -13.87 16
10 N -0.47 -10.75 2.08 -118.15 -0.25 -11.00 16
11 C -0.36 -8.29 7.06 -15.01 -0.11 -8.40 16
12 H 0.12 2.77 5.82 -33.43 -0.19 2.57 16
13 C 0.09 2.06 5.49 -17.46 -0.10 1.97 16
14 N -0.84 -20.33 13.96 55.50 0.77 -19.56 16
15 Si 0.88 19.70 24.79 -169.99 -4.21 15.49 16
16 H -0.27 -5.90 7.08 56.52 0.40 -5.50 16
17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
18 H -0.25 -5.87 6.36 56.52 0.36 -5.51 16
19 C 0.12 2.61 2.74 -4.05 -0.01 2.60 16
20 C -0.13 -2.23 6.10 -27.88 -0.17 -2.40 16
21 C 0.48 8.05 8.33 36.01 0.30 8.35 16
22 O -0.52 -10.12 16.74 -18.75 -0.31 -10.43 16
23 O -0.52 -6.69 13.42 -39.25 -0.53 -7.22 16
24 H 0.07 0.88 7.97 -51.92 -0.41 0.47 16
25 H 0.10 1.05 8.14 -51.92 -0.42 0.62 16
26 H 0.07 0.90 7.96 -51.92 -0.41 0.49 16
27 H 0.12 1.75 6.71 -52.48 -0.35 1.40 16
28 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16
29 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16
30 H 0.07 1.57 3.95 -51.93 -0.21 1.37 16
31 H 0.08 1.82 7.43 -51.93 -0.39 1.44 16
32 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16
33 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16
34 H 0.40 3.27 9.10 45.56 0.41 3.68 16
LS Contribution 313.59 15.07 4.73 4.73
Total: -1.00 -28.90 313.59 -6.12 -35.03
By element:
Atomic # 1 Polarization: 8.32 SS G_CDS: -2.42 Total: 5.90 kcal
Atomic # 6 Polarization: -1.83 SS G_CDS: 0.19 Total: -1.63 kcal
Atomic # 7 Polarization: -31.08 SS G_CDS: 0.53 Total: -30.56 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -0.77 Total: -31.52 kcal
Atomic # 14 Polarization: 19.70 SS G_CDS: -4.21 Total: 15.49 kcal
Atomic # 16 Polarization: 6.74 SS G_CDS: -4.17 Total: 2.57 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -28.90 -6.12 -35.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001599826355.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.712 kcal
(2) G-P(sol) polarization free energy of solvation -28.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.616 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds