Wall clock time and date at job start Tue Mar 31 2020 10:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76194 * 102.99741 * 2 1 4 4 C 1.38265 * 123.55192 * 0.04093 * 3 2 1 5 5 C 1.33489 * 115.10352 * 179.97438 * 4 3 2 6 6 S 1.70556 * 111.27264 * 359.97438 * 5 4 3 7 7 C 1.37768 * 123.54605 * 180.02562 * 3 2 1 8 8 C 1.41303 * 125.49479 * 0.02562 * 7 3 2 9 9 O 1.21854 * 120.00491 * 352.48112 * 8 7 3 10 10 N 1.34782 * 119.99818 * 172.47857 * 8 7 3 11 11 C 1.36929 * 119.99946 * 3.91304 * 10 8 7 12 12 H 1.07998 * 119.99766 * 306.40749 * 11 10 8 13 13 C 1.38941 * 119.99930 * 126.41074 * 11 10 8 14 14 N 1.31442 * 119.99765 * 182.92271 * 13 11 10 15 15 Si 1.86793 * 120.00314 * 2.91973 * 13 11 10 16 16 H 1.48504 * 109.47255 * 94.33050 * 15 13 11 17 17 H 1.48500 * 109.47705 * 214.32951 * 15 13 11 18 18 H 1.48498 * 109.47262 * 334.33456 * 15 13 11 19 19 C 1.46494 * 120.00228 * 183.91513 * 10 8 7 20 20 C 1.52995 * 109.47444 * 84.57363 * 19 10 8 21 21 C 1.50706 * 109.47339 * 180.02562 * 20 19 10 22 22 O 1.20824 * 119.99825 * 0.02562 * 21 20 19 23 23 O 1.34226 * 120.00009 * 180.02562 * 21 20 19 24 24 H 1.09001 * 109.47212 * 60.00235 * 1 2 3 25 25 H 1.09005 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47207 * 299.99692 * 1 2 3 27 27 H 1.08004 * 122.44687 * 359.97438 * 4 3 2 28 28 H 1.07997 * 124.36516 * 180.26180 * 5 4 3 29 29 H 0.97001 * 120.00362 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47417 * 204.57940 * 19 10 8 31 31 H 1.09003 * 109.47118 * 324.57724 * 19 10 8 32 32 H 1.09001 * 109.47308 * 300.00204 * 20 19 10 33 33 H 1.09000 * 109.47381 * 59.99938 * 20 19 10 34 34 H 0.96697 * 117.00377 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2594 2.7206 0.0008 5 6 1.7475 3.9630 0.0012 6 16 3.4530 3.9579 0.0013 7 6 3.5003 2.2004 -0.0005 8 6 4.6724 1.4111 -0.0016 9 8 4.5936 0.2029 0.1359 10 7 5.8776 1.9947 -0.1548 11 6 5.9734 3.3586 -0.2290 12 1 5.3824 3.9029 -0.9506 13 6 6.8311 4.0421 0.6241 14 7 6.8807 5.3552 0.5924 15 14 7.9135 3.0951 1.8160 16 1 9.2482 2.8738 1.2038 17 1 8.0676 3.8741 3.0709 18 1 7.2854 1.7845 2.1209 19 6 7.0851 1.1698 -0.2420 20 6 7.2807 0.7029 -1.6858 21 6 8.5226 -0.1462 -1.7754 22 8 9.1831 -0.3567 -0.7859 23 8 8.8948 -0.6685 -2.9545 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1992 2.5144 0.0011 28 1 1.1406 4.8564 0.0059 29 1 7.4791 5.8326 1.1882 30 1 7.9491 1.7561 0.0704 31 1 6.9802 0.3020 0.4092 32 1 6.4167 0.1165 -1.9983 33 1 7.3856 1.5706 -2.3372 34 1 9.6986 -1.2060 -2.9625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599826355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:01 Heat of formation + Delta-G solvation = -101.527886 kcal Electronic energy + Delta-G solvation = -22014.090524 eV Core-core repulsion = 18550.777242 eV Total energy + Delta-G solvation = -3463.313282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48080 -40.74775 -38.34961 -37.24146 -36.79743 -34.39098 -32.82861 -30.60771 -29.77523 -27.13835 -26.86684 -24.95322 -22.47117 -21.68140 -20.62879 -19.88185 -19.21141 -18.38492 -18.00535 -17.23551 -17.13121 -16.72521 -16.21220 -16.05062 -15.85066 -15.36782 -14.83988 -14.67325 -14.43165 -14.26732 -14.11241 -13.99377 -13.60310 -13.52476 -13.44063 -13.17488 -12.99963 -12.63476 -12.58289 -12.11428 -11.80223 -11.71247 -11.52353 -11.28307 -10.73622 -10.43129 -10.27278 -9.68387 -9.41518 -8.59141 -8.11029 -6.44566 -0.28403 0.48860 1.13104 1.14871 1.25009 1.30930 1.39854 1.49430 1.62228 1.83546 1.94646 2.13048 2.43968 2.77974 2.86262 3.80070 3.85230 4.21469 4.31639 4.35262 4.36124 4.40229 4.53697 4.56074 4.68767 4.84677 4.88514 5.02968 5.23326 5.39919 5.45346 5.53999 5.97604 6.08169 6.82819 6.95292 7.26647 7.67423 8.47998 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.006263 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.737354 B = 4469.582491 C = 6024.131191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.084 6.084 3 C -0.063 4.063 4 C -0.170 4.170 5 C -0.289 4.289 6 S 0.346 5.654 7 C -0.287 4.287 8 C 0.554 3.446 9 O -0.589 6.589 10 N -0.479 5.479 11 C -0.352 4.352 12 H 0.114 0.886 13 C 0.068 3.932 14 N -0.861 5.861 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.273 1.273 19 C 0.122 3.878 20 C -0.120 4.120 21 C 0.497 3.503 22 O -0.552 6.552 23 O -0.504 6.504 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.185 0.815 29 H 0.287 0.713 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -3.534 -4.491 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.155 5.845 3 C -0.192 4.192 4 C -0.203 4.203 5 C -0.428 4.428 6 S 0.620 5.380 7 C -0.415 4.415 8 C 0.347 3.653 9 O -0.476 6.476 10 N -0.201 5.201 11 C -0.485 4.485 12 H 0.130 0.870 13 C -0.144 4.144 14 N -0.494 5.494 15 Si 0.737 3.263 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.198 1.198 19 C -0.001 4.001 20 C -0.158 4.158 21 C 0.341 3.659 22 O -0.444 6.444 23 O -0.318 6.318 24 H 0.109 0.891 25 H 0.141 0.859 26 H 0.107 0.893 27 H 0.170 0.830 28 H 0.202 0.798 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.432 -3.569 -4.084 7.676 hybrid contribution -0.512 -0.506 0.704 1.007 sum -5.944 -4.074 -3.380 7.960 Atomic orbital electron populations 1.23883 0.94682 1.07969 1.06110 1.86364 1.06030 1.00815 1.91260 1.21588 0.94259 0.98969 1.04421 1.19854 1.00043 0.90884 1.09551 1.26867 1.08562 1.02094 1.05297 1.85245 0.93316 0.97357 1.62077 1.23146 0.95625 1.00462 1.22301 1.16293 0.83603 0.86934 0.78422 1.90694 1.86969 1.14953 1.54980 1.43536 1.04077 1.06240 1.66218 1.18916 1.28997 0.79556 1.21055 0.86999 1.25779 0.97110 0.95532 0.95936 1.69652 1.35910 1.06728 1.37087 0.86365 0.80425 0.79498 0.80049 1.18990 1.20553 1.19808 1.21289 0.88404 0.95075 0.95340 1.21622 0.94091 1.00362 0.99756 1.23286 0.85607 0.76769 0.80267 1.90700 1.55589 1.59262 1.38814 1.84500 1.48962 1.64138 1.34197 0.89129 0.85925 0.89341 0.82994 0.79775 0.90258 0.91886 0.92102 0.87081 0.85623 0.70958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.34 113.37 1.06 -2.35 16 2 S -0.08 -2.95 20.55 -56.49 -1.16 -4.11 16 3 C -0.06 -2.39 6.17 22.16 0.14 -2.26 16 4 C -0.17 -5.33 9.47 21.20 0.20 -5.13 16 5 C -0.29 -8.88 10.89 66.74 0.73 -8.15 16 6 S 0.35 13.29 18.22 -56.49 -1.03 12.26 16 7 C -0.29 -12.47 6.15 22.91 0.14 -12.33 16 8 C 0.55 26.62 7.38 84.99 0.63 27.25 16 9 O -0.59 -30.03 14.46 -4.84 -0.07 -30.10 16 10 N -0.48 -22.39 2.08 -645.86 -1.34 -23.73 16 11 C -0.35 -16.70 7.06 84.07 0.59 -16.11 16 12 H 0.11 5.41 5.82 -15.03 -0.09 5.32 16 13 C 0.07 3.26 5.49 84.92 0.47 3.73 16 14 N -0.86 -42.07 13.96 21.66 0.30 -41.77 16 15 Si 0.91 41.31 24.79 68.60 1.70 43.01 16 16 H -0.26 -11.77 7.08 99.48 0.70 -11.06 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -13.23 6.36 99.48 0.63 -12.59 16 19 C 0.12 5.37 2.74 86.38 0.24 5.60 16 20 C -0.12 -4.26 6.10 29.85 0.18 -4.08 16 21 C 0.50 16.26 8.33 71.24 0.59 16.85 16 22 O -0.55 -21.59 16.74 21.97 0.37 -21.22 16 23 O -0.50 -12.01 13.42 -51.38 -0.69 -12.70 16 24 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 25 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.09 1.73 7.96 -2.39 -0.02 1.71 16 27 H 0.15 3.74 6.71 -2.91 -0.02 3.72 16 28 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 29 H 0.29 13.20 8.31 -92.71 -0.77 12.43 16 30 H 0.06 2.85 3.95 -2.39 -0.01 2.84 16 31 H 0.06 2.87 7.43 -2.39 -0.02 2.86 16 32 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 33 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.43 5.89 9.10 -74.06 -0.67 5.22 16 Total: -1.00 -63.82 313.59 3.39 -60.43 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.34 Total: 14.90 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.96 Total: 3.04 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -1.04 Total: -65.50 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -0.39 Total: -64.02 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.70 Total: 43.01 kcal Atomic # 16 Polarization: 10.33 SS G_CDS: -2.19 Total: 8.14 kcal Total: -63.82 3.39 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599826355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.099 kcal (2) G-P(sol) polarization free energy of solvation -63.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds