Wall clock time and date at job start Tue Mar 31 2020 10:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48495 * 109.46919 * 269.99640 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00000 * 3 2 1 6 6 H 1.48506 * 109.47040 * 149.99475 * 3 2 1 7 7 C 1.37879 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46962 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99806 * 179.72225 * 11 10 9 14 14 C 1.39310 * 120.00199 * 174.86974 * 13 11 10 15 15 C 1.38871 * 120.16070 * 278.55796 * 14 13 11 16 16 Cl 1.73600 * 119.93526 * 359.97438 * 15 14 13 17 17 C 1.38179 * 120.12109 * 179.73798 * 15 14 13 18 18 C 1.38448 * 120.45589 * 0.50965 * 17 15 14 19 19 C 1.38111 * 120.31360 * 359.76365 * 18 17 15 20 20 F 1.35104 * 120.06591 * 179.97438 * 19 18 17 21 21 C 1.40017 * 119.86951 * 359.97438 * 19 18 17 22 22 C 1.47230 * 120.22154 * 180.02562 * 21 19 18 23 23 O 1.21529 * 119.99967 * 232.99949 * 22 21 19 24 24 O 1.34769 * 119.99737 * 53.00320 * 22 21 19 25 25 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46658 * 60.00458 * 9 7 2 27 27 H 1.08998 * 109.47530 * 300.00298 * 9 7 2 28 28 H 1.09003 * 109.47076 * 60.00694 * 10 9 7 29 29 H 1.08998 * 109.47224 * 300.00465 * 10 9 7 30 30 H 0.96998 * 120.00593 * 354.87193 * 13 11 10 31 31 H 1.08008 * 119.77092 * 180.25443 * 17 15 14 32 32 H 1.07996 * 119.84179 * 179.74479 * 18 17 15 33 33 H 0.96705 * 117.00196 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9672 0.0045 12 8 0.2790 -4.9672 0.0045 13 7 2.1656 -6.1344 0.0000 14 6 1.4738 -7.3386 0.1096 15 6 1.0702 -7.8006 1.3554 16 17 1.4291 -6.8759 2.7802 17 6 0.3794 -8.9924 1.4626 18 6 0.0924 -9.7412 0.3339 19 6 0.4900 -9.3019 -0.9136 20 9 0.2078 -10.0368 -2.0116 21 6 1.1860 -8.0934 -1.0383 22 6 1.6130 -7.6175 -2.3645 23 8 2.7749 -7.3181 -2.5576 24 8 0.7153 -7.5138 -3.3643 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8719 -3.6036 0.8928 29 1 2.8720 -3.6051 -0.8872 30 1 3.1323 -6.1360 -0.0794 31 1 0.0646 -9.3444 2.4340 32 1 -0.4445 -10.6733 0.4296 33 1 1.0428 -7.1970 -4.2173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:55 Heat of formation + Delta-G solvation = -154.717991 kcal Electronic energy + Delta-G solvation = -23537.400803 eV Core-core repulsion = 19503.524142 eV Total energy + Delta-G solvation = -4033.876661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.42692 -40.98354 -39.68170 -38.51371 -36.65467 -36.25593 -34.76238 -33.51178 -31.63549 -31.11966 -29.75010 -26.06661 -25.11090 -23.34971 -22.00657 -21.46604 -19.97839 -18.73114 -18.27766 -17.57292 -17.43902 -17.06480 -16.17744 -16.10683 -15.74143 -15.66167 -15.28900 -14.89179 -14.44424 -14.06755 -13.77466 -13.51990 -13.32941 -13.13908 -12.43139 -12.34298 -12.19086 -11.75910 -11.53713 -11.26613 -11.22297 -10.94951 -10.90931 -10.62215 -10.01597 -9.82863 -9.75091 -9.42375 -9.33793 -9.12171 -8.93449 -8.34303 -5.98125 -4.02740 0.17334 0.46126 1.70452 1.98561 2.62140 2.88338 2.94356 3.07146 3.32767 3.38988 3.41658 3.70522 4.24507 4.42957 4.45342 4.59461 4.73560 5.16845 5.25761 5.37099 5.41799 5.47105 5.54757 5.97606 6.14452 6.15563 6.19983 6.53371 6.78966 7.49993 7.59550 7.71247 7.80525 8.03103 8.32727 8.51806 9.04915 9.61053 11.12794 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.003772 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.979666 B = 7421.306561 C = 8403.956752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.126 4.126 11 C 0.518 3.482 12 O -0.511 6.511 13 N -0.704 5.704 14 C 0.242 3.758 15 C -0.051 4.051 16 Cl -0.031 7.031 17 C -0.047 4.047 18 C -0.148 4.148 19 C 0.156 3.844 20 F -0.119 7.119 21 C -0.144 4.144 22 C 0.541 3.459 23 O -0.493 6.493 24 O -0.500 6.500 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.419 0.581 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -22.919 0.776 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.166 4.166 11 C 0.308 3.692 12 O -0.383 6.383 13 N -0.360 5.360 14 C 0.147 3.853 15 C -0.080 4.080 16 Cl -0.002 7.002 17 C -0.067 4.067 18 C -0.167 4.167 19 C 0.135 3.865 20 F -0.097 7.097 21 C -0.148 4.148 22 C 0.382 3.618 23 O -0.381 6.381 24 O -0.311 6.311 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 2.048 -22.710 1.194 22.833 hybrid contribution 1.064 1.014 -0.726 1.640 sum 3.112 -21.695 0.468 21.923 Atomic orbital electron populations 1.69994 1.06062 1.26643 1.50073 1.25013 0.94818 0.99232 0.95215 0.86584 0.79791 0.83448 0.78097 1.20653 1.21204 1.19841 1.21190 0.92973 0.90861 1.51581 0.92504 1.18921 0.93088 0.89247 0.98719 1.21916 1.00880 0.90711 1.03092 1.21927 0.88794 0.84916 0.73538 1.90720 1.14180 1.87048 1.46335 1.43847 1.11157 1.02828 1.78162 1.16801 0.92970 0.86668 0.88840 1.21210 1.03244 0.95063 0.88503 1.98423 1.93225 1.72803 1.35743 1.21049 0.94212 0.91468 0.99935 1.21062 1.03376 1.02542 0.89717 1.17503 0.95751 0.89432 0.83793 1.91579 1.91028 1.75349 1.51761 1.19259 1.06639 0.97313 0.91628 1.20154 0.83284 0.74089 0.84238 1.90928 1.18979 1.45313 1.82891 1.84652 1.43325 1.79382 1.23790 0.92916 0.95810 0.95646 0.89540 0.89766 0.74151 0.82661 0.82508 0.72287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 11 C 0.52 9.93 7.53 -10.98 -0.08 9.84 16 12 O -0.51 -11.79 15.96 5.56 0.09 -11.70 16 13 N -0.70 -10.54 3.73 -9.65 -0.04 -10.58 16 14 C 0.24 3.37 5.27 -83.43 -0.44 2.93 16 15 C -0.05 -0.62 6.33 -39.37 -0.25 -0.87 16 16 Cl -0.03 -0.40 28.20 -51.86 -1.46 -1.86 16 17 C -0.05 -0.41 9.80 -39.53 -0.39 -0.80 16 18 C -0.15 -1.21 10.00 -39.55 -0.40 -1.60 16 19 C 0.16 1.71 7.28 -38.96 -0.28 1.43 16 20 F -0.12 -1.31 16.66 2.25 0.04 -1.27 16 21 C -0.14 -1.93 5.78 -104.78 -0.61 -2.54 16 22 C 0.54 7.64 7.11 34.38 0.24 7.88 16 23 O -0.49 -7.62 17.42 -19.29 -0.34 -7.95 16 24 O -0.50 -6.07 13.23 -40.68 -0.54 -6.61 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.42 5.25 8.83 -40.82 -0.36 4.89 16 31 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.42 3.06 9.11 45.56 0.42 3.47 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -36.06 325.50 -6.53 -42.59 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.02 Total: 1.53 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.89 Total: 0.88 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.70 Total: -37.10 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.79 Total: -26.26 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.46 Total: -1.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.06 -6.53 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.131 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds