Wall clock time and date at job start Tue Mar 31 2020 10:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48495 * 109.46919 * 269.99640 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00000 * 3 2 1 6 6 H 1.48506 * 109.47040 * 149.99475 * 3 2 1 7 7 C 1.37879 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46962 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99806 * 179.72225 * 11 10 9 14 14 C 1.39310 * 120.00199 * 174.86974 * 13 11 10 15 15 C 1.38871 * 120.16070 * 278.55796 * 14 13 11 16 16 Cl 1.73600 * 119.93526 * 359.97438 * 15 14 13 17 17 C 1.38179 * 120.12109 * 179.73798 * 15 14 13 18 18 C 1.38448 * 120.45589 * 0.50965 * 17 15 14 19 19 C 1.38111 * 120.31360 * 359.76365 * 18 17 15 20 20 F 1.35104 * 120.06591 * 179.97438 * 19 18 17 21 21 C 1.40017 * 119.86951 * 359.97438 * 19 18 17 22 22 C 1.47230 * 120.22154 * 180.02562 * 21 19 18 23 23 O 1.21529 * 119.99967 * 232.99949 * 22 21 19 24 24 O 1.34769 * 119.99737 * 53.00320 * 22 21 19 25 25 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46658 * 60.00458 * 9 7 2 27 27 H 1.08998 * 109.47530 * 300.00298 * 9 7 2 28 28 H 1.09003 * 109.47076 * 60.00694 * 10 9 7 29 29 H 1.08998 * 109.47224 * 300.00465 * 10 9 7 30 30 H 0.96998 * 120.00593 * 354.87193 * 13 11 10 31 31 H 1.08008 * 119.77092 * 180.25443 * 17 15 14 32 32 H 1.07996 * 119.84179 * 179.74479 * 18 17 15 33 33 H 0.96705 * 117.00196 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9672 0.0045 12 8 0.2790 -4.9672 0.0045 13 7 2.1656 -6.1344 0.0000 14 6 1.4738 -7.3386 0.1096 15 6 1.0702 -7.8006 1.3554 16 17 1.4291 -6.8759 2.7802 17 6 0.3794 -8.9924 1.4626 18 6 0.0924 -9.7412 0.3339 19 6 0.4900 -9.3019 -0.9136 20 9 0.2078 -10.0368 -2.0116 21 6 1.1860 -8.0934 -1.0383 22 6 1.6130 -7.6175 -2.3645 23 8 2.7749 -7.3181 -2.5576 24 8 0.7153 -7.5138 -3.3643 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8719 -3.6036 0.8928 29 1 2.8720 -3.6051 -0.8872 30 1 3.1323 -6.1360 -0.0794 31 1 0.0646 -9.3444 2.4340 32 1 -0.4445 -10.6733 0.4296 33 1 1.0428 -7.1970 -4.2173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:55 Heat of formation + Delta-G solvation = -179.877340 kcal Electronic energy + Delta-G solvation = -23538.491794 eV Core-core repulsion = 19503.524142 eV Total energy + Delta-G solvation = -4034.967652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.27100 -42.07346 -40.89305 -39.66190 -37.59398 -37.29241 -36.02741 -35.57769 -33.16128 -32.42158 -30.84768 -27.88697 -26.19000 -24.65583 -23.29748 -22.68948 -21.52459 -19.72227 -19.32804 -18.91544 -18.53727 -18.37589 -17.66359 -17.17442 -16.93463 -16.61023 -16.45366 -16.43617 -16.20588 -15.14024 -14.97547 -14.74598 -14.32099 -14.23327 -14.22112 -13.84868 -13.29772 -13.23250 -12.83615 -12.79135 -12.50156 -12.46079 -12.24615 -11.97440 -11.94228 -11.69174 -11.34368 -11.09564 -10.83941 -10.56700 -10.40038 -9.85638 -8.18795 -6.32626 -0.70374 -0.40952 0.74898 0.99580 1.42110 1.44187 1.44993 1.55382 1.73716 1.79936 2.12931 2.42549 2.82932 3.14563 3.49356 3.58717 3.61620 3.85680 4.05537 4.33722 4.43725 4.45715 4.51306 4.69703 4.77191 4.98566 5.15507 5.26136 5.40018 5.48941 5.59504 5.83034 6.15725 6.20108 6.66645 6.84192 7.06306 7.37524 8.93756 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.003772 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.979666 B = 7421.306561 C = 8403.956752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.046 3.954 10 C -0.118 4.118 11 C 0.526 3.474 12 O -0.558 6.558 13 N -0.685 5.685 14 C 0.209 3.791 15 C -0.062 4.062 16 Cl -0.042 7.042 17 C -0.032 4.032 18 C -0.122 4.122 19 C 0.151 3.849 20 F -0.120 7.120 21 C -0.167 4.167 22 C 0.536 3.464 23 O -0.516 6.516 24 O -0.503 6.503 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.012 1.012 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.429 0.571 31 H 0.194 0.806 32 H 0.202 0.798 33 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -24.399 1.442 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.316 3.684 12 O -0.434 6.434 13 N -0.339 5.339 14 C 0.115 3.885 15 C -0.091 4.091 16 Cl -0.013 7.013 17 C -0.051 4.051 18 C -0.140 4.140 19 C 0.130 3.870 20 F -0.098 7.098 21 C -0.171 4.171 22 C 0.379 3.621 23 O -0.406 6.406 24 O -0.317 6.317 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.006 0.994 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.271 0.729 31 H 0.211 0.789 32 H 0.219 0.781 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 3.091 -24.237 1.842 24.503 hybrid contribution 0.695 1.334 -0.966 1.787 sum 3.786 -22.903 0.876 23.231 Atomic orbital electron populations 1.70166 1.08218 1.27822 1.51334 1.26082 0.95691 1.03762 0.94557 0.85352 0.78719 0.77879 0.78499 1.19791 1.21076 1.17988 1.21677 0.93972 0.91550 1.50995 0.90717 1.18670 0.93509 0.92041 0.94975 1.21675 0.99563 0.89330 1.05148 1.21528 0.87955 0.85790 0.73113 1.90697 1.15985 1.87776 1.48955 1.43381 1.11594 1.02470 1.76490 1.16973 0.94976 0.86505 0.90015 1.21414 1.04029 0.96242 0.87408 1.98419 1.93400 1.73414 1.36100 1.21527 0.92032 0.89650 1.01889 1.21561 1.01278 1.03311 0.87879 1.17719 0.95612 0.88787 0.84870 1.91580 1.90964 1.75137 1.52115 1.19351 1.08088 0.98660 0.90975 1.20449 0.83162 0.73629 0.84888 1.90900 1.19763 1.46520 1.83413 1.84623 1.43183 1.79161 1.24702 0.92820 0.99845 0.99394 0.87153 0.87884 0.72934 0.78862 0.78084 0.70260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 8 H 0.07 3.89 7.74 -2.92 -0.02 3.87 16 9 C 0.05 2.54 4.26 29.85 0.13 2.66 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.53 20.61 7.53 87.66 0.66 21.27 16 12 O -0.56 -26.86 15.96 -3.03 -0.05 -26.90 16 13 N -0.68 -20.53 3.73 -302.84 -1.13 -21.66 16 14 C 0.21 5.73 5.27 38.62 0.20 5.94 16 15 C -0.06 -1.41 6.33 22.41 0.14 -1.27 16 16 Cl -0.04 -1.04 28.20 -2.72 -0.08 -1.12 16 17 C -0.03 -0.45 9.80 22.31 0.22 -0.23 16 18 C -0.12 -1.51 10.00 22.29 0.22 -1.29 16 19 C 0.15 3.00 7.28 22.67 0.17 3.17 16 20 F -0.12 -2.41 16.66 44.97 0.75 -1.66 16 21 C -0.17 -4.37 5.78 -19.97 -0.12 -4.49 16 22 C 0.54 15.19 7.11 70.19 0.50 15.69 16 23 O -0.52 -16.07 17.42 19.74 0.34 -15.72 16 24 O -0.50 -12.21 13.23 -56.80 -0.75 -12.96 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 27 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 28 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 29 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.43 10.65 8.83 -92.71 -0.82 9.83 16 31 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.20 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.43 6.36 9.11 -74.05 -0.67 5.69 16 Total: -1.00 -81.93 325.50 4.10 -77.83 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -0.29 Total: 8.29 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 2.99 Total: 6.35 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -0.84 Total: -80.48 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.46 Total: -55.59 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.75 Total: -1.66 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -81.93 4.10 -77.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.044 kcal (2) G-P(sol) polarization free energy of solvation -81.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds