Wall clock time and date at job start Tue Mar 31 2020 10:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86801 * 120.00503 * 2 1 4 4 H 1.48501 * 109.47153 * 272.99831 * 3 2 1 5 5 H 1.48499 * 109.47179 * 32.99924 * 3 2 1 6 6 H 1.48500 * 109.47238 * 153.00046 * 3 2 1 7 7 C 1.39033 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 34.13929 * 7 2 1 9 9 N 1.36892 * 120.00217 * 213.86050 * 7 2 1 10 10 C 1.46500 * 119.99858 * 34.81835 * 9 7 2 11 11 C 1.52998 * 109.47507 * 97.20326 * 10 9 7 12 12 C 1.50705 * 109.47453 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99841 * 359.97438 * 12 11 10 14 14 O 1.34222 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00394 * 214.81425 * 9 7 2 16 16 O 1.21617 * 120.00489 * 174.01840 * 15 9 7 17 17 C 1.47535 * 119.99735 * 354.01916 * 15 9 7 18 18 C 1.39763 * 120.13478 * 40.73537 * 17 15 9 19 19 C 1.37769 * 119.88264 * 179.71707 * 18 17 15 20 20 C 1.38736 * 120.16270 * 0.56047 * 19 18 17 21 21 F 1.35097 * 119.86188 * 179.73966 * 20 19 18 22 22 C 1.38577 * 120.27145 * 359.71212 * 20 19 18 23 23 C 1.38007 * 120.11294 * 0.02562 * 22 20 19 24 24 Cl 1.73598 * 120.07934 * 179.97438 * 23 22 20 25 25 H 0.97008 * 119.99712 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47205 * 217.20477 * 10 9 7 27 27 H 1.09000 * 109.46990 * 337.20000 * 10 9 7 28 28 H 1.09000 * 109.47011 * 300.00269 * 11 10 9 29 29 H 1.09001 * 109.46748 * 59.99955 * 11 10 9 30 30 H 0.96708 * 116.99806 * 179.97438 * 14 12 11 31 31 H 1.08001 * 120.05892 * 359.97438 * 18 17 15 32 32 H 1.07996 * 119.91884 * 180.25148 * 19 18 17 33 33 H 1.08003 * 119.93880 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4320 2.0830 -1.3982 5 1 1.4786 2.6335 0.7625 6 1 3.5757 1.4225 0.6356 7 6 2.0088 -1.2041 0.0005 8 1 1.6083 -2.0590 -0.5240 9 7 3.2036 -1.3045 0.6611 10 6 3.4170 -0.5621 1.9060 11 6 3.1513 -1.4813 3.0999 12 6 3.3714 -0.7178 4.3805 13 8 3.7068 0.4423 4.3421 14 8 3.1948 -1.3266 5.5635 15 6 4.1837 -2.0862 0.1664 16 8 5.2807 -2.0918 0.6914 17 6 3.9257 -2.9354 -1.0123 18 6 3.1712 -2.4425 -2.0805 19 6 2.9384 -3.2379 -3.1811 20 6 3.4412 -4.5301 -3.2262 21 9 3.2048 -5.3066 -4.3061 22 6 4.1854 -5.0274 -2.1682 23 6 4.4300 -4.2386 -1.0625 24 17 5.3618 -4.8628 0.2625 25 1 -0.4850 0.8401 -0.0004 26 1 4.4461 -0.2050 1.9443 27 1 2.7358 0.2880 1.9433 28 1 2.1222 -1.8384 3.0616 29 1 3.8325 -2.3314 3.0625 30 1 3.3481 -0.7961 6.3575 31 1 2.7748 -1.4385 -2.0451 32 1 2.3589 -2.8562 -4.0086 33 1 4.5746 -6.0341 -2.2092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:20 Heat of formation + Delta-G solvation = -135.236923 kcal Electronic energy + Delta-G solvation = -23991.871805 eV Core-core repulsion = 19958.839907 eV Total energy + Delta-G solvation = -4033.031898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.80297 -40.10563 -39.57160 -37.79620 -36.08958 -35.97191 -35.19131 -32.52266 -31.53259 -30.59186 -29.84233 -25.29594 -25.01140 -22.85747 -22.56637 -20.88189 -19.50865 -18.13628 -17.80128 -17.31192 -16.69176 -16.28889 -16.10540 -15.66596 -15.48761 -14.90423 -14.86995 -14.35998 -14.03780 -13.59509 -13.44242 -13.20726 -12.91436 -12.79878 -12.73604 -12.44903 -12.07360 -11.90268 -11.33191 -11.23583 -11.10067 -10.97328 -10.78467 -10.61603 -10.40774 -10.31690 -9.94336 -9.40566 -8.82887 -8.69724 -8.35641 -8.04938 -6.79338 -4.23776 1.06052 1.36723 2.37228 2.48232 2.99539 3.13158 3.17184 3.25178 3.37980 3.94538 3.99625 4.17912 4.41248 4.69448 4.95396 5.15307 5.30763 5.40425 5.49826 5.53717 5.75335 5.78554 6.03013 6.10254 6.18525 6.32181 6.46895 6.52854 6.58015 6.71164 6.97017 7.06165 7.77585 8.00975 8.12519 8.69063 9.09609 9.42819 10.28229 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.005788 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.557125 B = 4836.385835 C = 6412.833234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.082 3.918 3 Si 0.844 3.156 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.249 1.249 7 C -0.376 4.376 8 H 0.112 0.888 9 N -0.444 5.444 10 C 0.130 3.870 11 C -0.127 4.127 12 C 0.486 3.514 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.512 3.488 16 O -0.572 6.572 17 C -0.096 4.096 18 C -0.024 4.024 19 C -0.165 4.165 20 C 0.114 3.886 21 F -0.139 7.139 22 C -0.166 4.166 23 C 0.024 3.976 24 Cl -0.046 7.046 25 H 0.279 0.721 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.171 0.829 32 H 0.140 0.860 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -5.580 -0.117 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.130 4.130 3 Si 0.668 3.332 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.502 4.502 8 H 0.129 0.871 9 N -0.163 5.163 10 C 0.006 3.994 11 C -0.166 4.166 12 C 0.329 3.671 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.301 3.699 16 O -0.456 6.456 17 C -0.100 4.100 18 C -0.042 4.042 19 C -0.184 4.184 20 C 0.094 3.906 21 F -0.118 7.118 22 C -0.186 4.186 23 C -0.004 4.004 24 Cl -0.016 7.016 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.262 0.738 31 H 0.188 0.812 32 H 0.158 0.842 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.704 -5.458 -0.116 6.597 hybrid contribution 0.145 1.001 0.373 1.078 sum 3.850 -4.457 0.256 5.895 Atomic orbital electron populations 1.69941 1.06772 1.28990 1.39773 1.25249 0.94630 0.98578 0.94527 0.87461 0.82569 0.83837 0.79346 1.19852 1.20382 1.17249 1.19103 0.95897 0.99028 1.36153 0.87056 1.43484 1.13280 1.40988 1.18575 1.21421 1.02429 0.93221 0.82304 1.21815 1.06128 1.00486 0.88166 1.23661 0.72162 0.85941 0.85379 1.90698 1.43752 1.18470 1.87916 1.84582 1.82779 1.48749 1.17014 1.17884 0.84067 0.83911 0.84015 1.90717 1.22909 1.69783 1.62167 1.19896 0.99769 0.93017 0.97341 1.21844 0.91252 1.01763 0.89367 1.21236 1.03600 0.92842 1.00767 1.17638 0.99144 0.89653 0.84176 1.91485 1.92816 1.74585 1.52895 1.20708 1.03535 1.01439 0.92913 1.20609 0.96496 0.92987 0.90317 1.98378 1.71048 1.86442 1.45756 0.91033 0.90282 0.90224 0.86772 0.87458 0.73844 0.81210 0.84168 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.20 13.95 55.50 0.77 -19.43 16 2 C 0.08 1.92 5.00 -17.45 -0.09 1.83 16 3 Si 0.84 18.37 26.30 -169.99 -4.47 13.90 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.25 -5.52 5.72 56.52 0.32 -5.19 16 7 C -0.38 -8.53 6.99 -15.00 -0.10 -8.64 16 8 H 0.11 2.61 6.19 -52.49 -0.32 2.29 16 9 N -0.44 -9.68 2.21 -115.99 -0.26 -9.94 16 10 C 0.13 2.72 2.79 -4.04 -0.01 2.71 16 11 C -0.13 -2.28 6.07 -27.88 -0.17 -2.44 16 12 C 0.49 8.16 8.33 36.01 0.30 8.46 16 13 O -0.52 -10.14 16.74 -18.75 -0.31 -10.45 16 14 O -0.52 -6.83 13.42 -39.24 -0.53 -7.35 16 15 C 0.51 11.03 6.89 -12.47 -0.09 10.95 16 16 O -0.57 -13.23 15.03 5.26 0.08 -13.15 16 17 C -0.10 -1.85 5.32 -104.94 -0.56 -2.40 16 18 C -0.02 -0.41 7.63 -39.18 -0.30 -0.71 16 19 C -0.17 -2.49 10.01 -39.57 -0.40 -2.88 16 20 C 0.11 1.69 7.31 -39.27 -0.29 1.40 16 21 F -0.14 -1.98 17.26 2.25 0.04 -1.94 16 22 C -0.17 -2.49 9.79 -39.54 -0.39 -2.88 16 23 C 0.02 0.42 6.33 -39.07 -0.25 0.17 16 24 Cl -0.05 -0.77 26.86 -51.86 -1.39 -2.17 16 25 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 26 H 0.08 1.73 7.48 -51.93 -0.39 1.34 16 27 H 0.08 1.74 4.39 -51.93 -0.23 1.51 16 28 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 29 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 30 H 0.40 3.35 9.10 45.56 0.41 3.77 16 31 H 0.17 3.11 6.12 -52.49 -0.32 2.79 16 32 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -27.66 308.20 -5.51 -33.17 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -1.75 Total: 7.15 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.33 Total: 5.57 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.52 Total: -29.36 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.76 Total: -30.95 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.47 Total: 13.90 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.39 Total: -2.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.66 -5.51 -33.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.069 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds