Wall clock time and date at job start Tue Mar 31 2020 10:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86801 * 120.00503 * 2 1 4 4 H 1.48501 * 109.47153 * 272.99831 * 3 2 1 5 5 H 1.48499 * 109.47179 * 32.99924 * 3 2 1 6 6 H 1.48500 * 109.47238 * 153.00046 * 3 2 1 7 7 C 1.39033 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 34.13929 * 7 2 1 9 9 N 1.36892 * 120.00217 * 213.86050 * 7 2 1 10 10 C 1.46500 * 119.99858 * 34.81835 * 9 7 2 11 11 C 1.52998 * 109.47507 * 97.20326 * 10 9 7 12 12 C 1.50705 * 109.47453 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99841 * 359.97438 * 12 11 10 14 14 O 1.34222 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00394 * 214.81425 * 9 7 2 16 16 O 1.21617 * 120.00489 * 174.01840 * 15 9 7 17 17 C 1.47535 * 119.99735 * 354.01916 * 15 9 7 18 18 C 1.39763 * 120.13478 * 40.73537 * 17 15 9 19 19 C 1.37769 * 119.88264 * 179.71707 * 18 17 15 20 20 C 1.38736 * 120.16270 * 0.56047 * 19 18 17 21 21 F 1.35097 * 119.86188 * 179.73966 * 20 19 18 22 22 C 1.38577 * 120.27145 * 359.71212 * 20 19 18 23 23 C 1.38007 * 120.11294 * 0.02562 * 22 20 19 24 24 Cl 1.73598 * 120.07934 * 179.97438 * 23 22 20 25 25 H 0.97008 * 119.99712 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47205 * 217.20477 * 10 9 7 27 27 H 1.09000 * 109.46990 * 337.20000 * 10 9 7 28 28 H 1.09000 * 109.47011 * 300.00269 * 11 10 9 29 29 H 1.09001 * 109.46748 * 59.99955 * 11 10 9 30 30 H 0.96708 * 116.99806 * 179.97438 * 14 12 11 31 31 H 1.08001 * 120.05892 * 359.97438 * 18 17 15 32 32 H 1.07996 * 119.91884 * 180.25148 * 19 18 17 33 33 H 1.08003 * 119.93880 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4320 2.0830 -1.3982 5 1 1.4786 2.6335 0.7625 6 1 3.5757 1.4225 0.6356 7 6 2.0088 -1.2041 0.0005 8 1 1.6083 -2.0590 -0.5240 9 7 3.2036 -1.3045 0.6611 10 6 3.4170 -0.5621 1.9060 11 6 3.1513 -1.4813 3.0999 12 6 3.3714 -0.7178 4.3805 13 8 3.7068 0.4423 4.3421 14 8 3.1948 -1.3266 5.5635 15 6 4.1837 -2.0862 0.1664 16 8 5.2807 -2.0918 0.6914 17 6 3.9257 -2.9354 -1.0123 18 6 3.1712 -2.4425 -2.0805 19 6 2.9384 -3.2379 -3.1811 20 6 3.4412 -4.5301 -3.2262 21 9 3.2048 -5.3066 -4.3061 22 6 4.1854 -5.0274 -2.1682 23 6 4.4300 -4.2386 -1.0625 24 17 5.3618 -4.8628 0.2625 25 1 -0.4850 0.8401 -0.0004 26 1 4.4461 -0.2050 1.9443 27 1 2.7358 0.2880 1.9433 28 1 2.1222 -1.8384 3.0616 29 1 3.8325 -2.3314 3.0625 30 1 3.3481 -0.7961 6.3575 31 1 2.7748 -1.4385 -2.0451 32 1 2.3589 -2.8562 -4.0086 33 1 4.5746 -6.0341 -2.2092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:20 Heat of formation + Delta-G solvation = -151.452383 kcal Electronic energy + Delta-G solvation = -23992.574961 eV Core-core repulsion = 19958.839907 eV Total energy + Delta-G solvation = -4033.735053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.98443 -41.54436 -41.01249 -39.23945 -37.44341 -37.26689 -36.85371 -34.26166 -33.05452 -31.90057 -31.24354 -27.04998 -26.52218 -24.22091 -23.88933 -22.24562 -21.14916 -19.67106 -19.11455 -18.64151 -18.14113 -17.88935 -17.41799 -17.04895 -16.71589 -16.47139 -16.44237 -15.71484 -15.61645 -15.08782 -14.78013 -14.54570 -14.50139 -14.33246 -14.15427 -13.86875 -13.65334 -13.46969 -12.84378 -12.75182 -12.59689 -12.31308 -12.24727 -12.05206 -11.95423 -11.76302 -11.66362 -11.14641 -10.53147 -10.02721 -9.78479 -9.68139 -8.60852 -6.04694 -0.27779 0.09592 1.04841 1.13731 1.24144 1.37773 1.46657 1.74192 1.95148 2.21199 2.49159 2.62115 2.96075 3.18792 3.72833 3.83627 3.87242 3.96002 4.01805 4.21357 4.36970 4.44954 4.58183 4.67899 4.85643 4.89978 4.91802 5.16071 5.26385 5.31853 5.54365 5.70663 6.01779 6.21837 6.91212 6.95658 7.35503 7.70484 8.50070 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.005788 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.557125 B = 4836.385835 C = 6412.833234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.062 3.938 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.362 4.362 8 H 0.104 0.896 9 N -0.453 5.453 10 C 0.129 3.871 11 C -0.121 4.121 12 C 0.497 3.503 13 O -0.551 6.551 14 O -0.506 6.506 15 C 0.512 3.488 16 O -0.592 6.592 17 C -0.125 4.125 18 C -0.030 4.030 19 C -0.155 4.155 20 C 0.125 3.875 21 F -0.130 7.130 22 C -0.155 4.155 23 C 0.017 3.983 24 Cl -0.047 7.047 25 H 0.282 0.718 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.428 0.572 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -6.872 -0.654 7.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.148 4.148 3 Si 0.703 3.297 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.121 0.879 9 N -0.172 5.172 10 C 0.005 3.995 11 C -0.160 4.160 12 C 0.341 3.659 13 O -0.442 6.442 14 O -0.319 6.319 15 C 0.303 3.697 16 O -0.477 6.477 17 C -0.129 4.129 18 C -0.049 4.049 19 C -0.174 4.174 20 C 0.105 3.895 21 F -0.108 7.108 22 C -0.174 4.174 23 C -0.011 4.011 24 Cl -0.017 7.017 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.290 0.710 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.818 -6.759 -0.634 7.789 hybrid contribution 0.170 1.281 0.524 1.394 sum 3.988 -5.478 -0.111 6.777 Atomic orbital electron populations 1.69957 1.07421 1.29497 1.41957 1.25489 0.94779 0.99767 0.94747 0.86932 0.81240 0.82282 0.79198 1.19343 1.20815 1.18392 1.18982 0.95651 0.98547 1.35637 0.87897 1.43559 1.13203 1.41426 1.19045 1.21325 1.01121 0.93616 0.83390 1.21623 1.06454 0.99889 0.87998 1.23263 0.71471 0.85130 0.86045 1.90697 1.45336 1.19678 1.88478 1.84504 1.81874 1.48589 1.16948 1.18288 0.83556 0.83524 0.84348 1.90689 1.23616 1.70330 1.63052 1.19838 1.02055 0.93840 0.97128 1.21687 0.91560 1.01652 0.90002 1.21425 1.02849 0.92587 1.00497 1.17621 0.98267 0.89453 0.84135 1.91519 1.92617 1.74281 1.52406 1.20938 1.02534 1.02223 0.91753 1.20693 0.96652 0.92709 0.91084 1.98374 1.71067 1.86279 1.46026 0.90747 0.91780 0.91388 0.86292 0.87089 0.70966 0.82503 0.81557 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.11 13.95 21.68 0.30 -41.81 16 2 C 0.06 2.89 5.00 84.95 0.43 3.31 16 3 Si 0.88 38.17 26.30 68.60 1.80 39.97 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.65 5.72 99.48 0.57 -11.08 16 7 C -0.36 -16.51 6.99 84.09 0.59 -15.92 16 8 H 0.10 4.85 6.19 -2.91 -0.02 4.84 16 9 N -0.45 -19.91 2.21 -639.14 -1.41 -21.32 16 10 C 0.13 5.48 2.79 86.38 0.24 5.72 16 11 C -0.12 -4.30 6.07 29.85 0.18 -4.11 16 12 C 0.50 16.25 8.33 71.24 0.59 16.85 16 13 O -0.55 -21.30 16.74 21.98 0.37 -20.93 16 14 O -0.51 -12.18 13.42 -51.34 -0.69 -12.87 16 15 C 0.51 22.16 6.89 86.70 0.60 22.76 16 16 O -0.59 -27.53 15.03 -4.08 -0.06 -27.59 16 17 C -0.12 -4.70 5.32 -20.07 -0.11 -4.81 16 18 C -0.03 -1.03 7.63 22.53 0.17 -0.86 16 19 C -0.15 -4.27 10.01 22.28 0.22 -4.05 16 20 C 0.13 3.32 7.31 22.47 0.16 3.49 16 21 F -0.13 -3.21 17.26 44.97 0.78 -2.43 16 22 C -0.16 -4.21 9.79 22.30 0.22 -3.99 16 23 C 0.02 0.55 6.33 22.60 0.14 0.70 16 24 Cl -0.05 -1.53 26.86 -2.72 -0.07 -1.61 16 25 H 0.28 13.12 8.31 -92.70 -0.77 12.35 16 26 H 0.06 2.88 7.48 -2.39 -0.02 2.86 16 27 H 0.07 3.02 4.39 -2.39 -0.01 3.01 16 28 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 29 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.43 5.98 9.10 -74.05 -0.67 5.31 16 31 H 0.16 5.73 6.12 -2.91 -0.02 5.71 16 32 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -58.44 308.20 4.85 -53.60 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.39 Total: 15.91 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 3.44 Total: 19.08 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -1.11 Total: -63.13 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -0.38 Total: -61.39 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.80 Total: 39.97 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.61 kcal Total: -58.44 4.85 -53.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.855 kcal (2) G-P(sol) polarization free energy of solvation -58.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds