Wall clock time and date at job start Tue Mar 31 2020 11:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47168 * 2 1 4 4 C 1.50698 * 109.47234 * 240.00029 * 2 1 3 5 5 H 1.08001 * 120.00449 * 240.00264 * 4 2 1 6 6 C 1.37883 * 119.99843 * 60.00186 * 4 2 1 7 7 N 1.31514 * 120.00116 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00137 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46912 * 89.99489 * 8 6 4 10 10 H 1.48489 * 109.47017 * 209.99939 * 8 6 4 11 11 H 1.48506 * 109.46814 * 329.99856 * 8 6 4 12 12 C 1.50698 * 109.47218 * 119.99968 * 2 1 3 13 13 O 1.21292 * 120.00089 * 119.99573 * 12 2 1 14 14 N 1.34770 * 120.00294 * 300.00181 * 12 2 1 15 15 C 1.40001 * 120.00551 * 184.60530 * 14 12 2 16 16 C 1.38994 * 119.96896 * 144.92038 * 15 14 12 17 17 C 1.38358 * 120.23517 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.91303 * 179.97438 * 17 16 15 19 19 C 1.38399 * 120.16413 * 0.02562 * 17 16 15 20 20 Cl 1.73604 * 120.03518 * 179.97438 * 19 17 16 21 21 C 1.39709 * 119.92872 * 359.95541 * 19 17 16 22 22 C 1.47667 * 120.11634 * 180.02562 * 21 19 17 23 23 O 1.21476 * 120.00295 * 359.97438 * 22 21 19 24 24 O 1.34717 * 120.00166 * 180.02562 * 22 21 19 25 25 C 1.38536 * 119.96121 * 324.90197 * 15 14 12 26 26 H 1.08996 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47109 * 300.00012 * 1 2 3 28 28 H 1.09004 * 109.47270 * 59.99377 * 1 2 3 29 29 H 0.96996 * 119.99853 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00028 * 4.60035 * 14 12 2 31 31 H 1.08003 * 119.87765 * 359.95907 * 16 15 14 32 32 H 0.96696 * 117.00757 * 179.97438 * 24 22 21 33 33 H 1.08001 * 120.08232 * 359.74168 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7123 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.2509 -0.8508 3.5960 16 6 2.5587 -0.0764 4.7084 17 6 3.0961 -0.6645 5.8396 18 9 3.3934 0.0944 6.9170 19 6 3.3309 -2.0281 5.8698 20 17 4.0059 -2.7625 7.2906 21 6 3.0236 -2.8131 4.7556 22 6 3.2718 -4.2685 4.7835 23 8 3.7444 -4.7852 5.7761 24 8 2.9752 -5.0232 3.7077 25 6 2.4815 -2.2167 3.6157 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7082 1.1609 -3.4844 30 1 1.0955 0.4977 2.5447 31 1 2.3780 0.9882 4.6895 32 1 3.1556 -5.9709 3.7728 33 1 2.2382 -2.8193 2.7531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:04 Heat of formation + Delta-G solvation = -162.224009 kcal Electronic energy + Delta-G solvation = -23404.308066 eV Core-core repulsion = 19370.105920 eV Total energy + Delta-G solvation = -4034.202146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.16774 -41.90542 -41.09335 -39.41287 -37.76797 -37.10213 -35.81671 -35.68743 -32.72312 -32.39927 -30.38211 -27.18427 -26.26673 -25.27141 -23.77862 -22.55905 -21.21057 -19.91493 -18.89112 -18.37254 -18.21927 -17.88344 -17.41291 -17.14222 -17.08506 -16.72118 -16.59299 -16.43007 -15.77628 -15.00154 -14.84188 -14.56039 -14.33097 -14.11589 -13.79204 -13.51564 -13.28118 -12.96269 -12.91829 -12.69825 -12.68709 -12.60128 -12.56168 -12.19149 -12.01653 -11.34442 -11.18679 -11.03001 -10.65358 -10.40990 -10.22566 -9.36650 -8.14153 -6.23785 -0.81960 -0.31019 0.79634 1.17792 1.43179 1.45664 1.55314 1.72784 1.73319 2.01105 2.31329 2.47107 2.91714 3.17032 3.41905 3.68235 3.72965 3.90187 4.24311 4.33839 4.55267 4.65490 4.77357 4.92949 4.95003 5.04317 5.05492 5.44959 5.51371 5.55464 5.77398 5.94542 6.20548 6.51574 6.84761 6.87447 7.25106 7.45670 8.91241 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.003520 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.432841 B = 7953.619601 C = 8949.958518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.549 6.549 14 N -0.664 5.664 15 C 0.173 3.827 16 C -0.118 4.118 17 C 0.123 3.877 18 F -0.116 7.116 19 C -0.054 4.054 20 Cl -0.021 7.021 21 C -0.086 4.086 22 C 0.530 3.470 23 O -0.510 6.510 24 O -0.503 6.503 25 C -0.073 4.073 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.432 0.568 31 H 0.192 0.808 32 H 0.436 0.564 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -1.984 16.391 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.317 3.683 13 O -0.425 6.425 14 N -0.311 5.311 15 C 0.077 3.923 16 C -0.140 4.140 17 C 0.102 3.898 18 F -0.094 7.094 19 C -0.083 4.083 20 Cl 0.008 6.992 21 C -0.089 4.089 22 C 0.373 3.627 23 O -0.400 6.400 24 O -0.317 6.317 25 C -0.094 4.094 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.272 0.728 31 H 0.209 0.791 32 H 0.299 0.701 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.468 -2.309 16.475 16.643 hybrid contribution 0.340 -0.715 -0.645 1.021 sum 0.808 -3.024 15.830 16.137 Atomic orbital electron populations 1.21626 0.94600 0.99900 1.02236 1.18843 0.95577 0.96332 0.88512 0.92952 1.21284 1.31692 1.12853 0.90884 0.92901 1.25500 0.95196 0.95649 1.01235 1.69925 1.37089 1.23448 1.24317 0.85674 0.78674 0.78540 0.79481 1.20137 1.20405 1.20369 1.21905 0.77808 0.83760 0.84814 1.90564 1.38246 1.26998 1.86711 1.43743 1.47701 1.36765 1.02920 1.17563 0.96244 0.90902 0.87617 1.21269 0.99573 1.02829 0.90282 1.16681 1.01527 0.86081 0.85496 1.91581 1.90910 1.74629 1.52329 1.20987 1.04170 0.92153 0.90981 1.98415 1.82632 1.82347 1.35792 1.18469 1.05691 0.90899 0.93842 1.20380 0.74409 0.87441 0.80424 1.90963 1.41252 1.74282 1.33511 1.84590 1.78683 1.27765 1.40659 1.21650 0.96366 0.94424 0.97002 0.95458 0.92280 0.91025 0.92627 0.72814 0.79131 0.70104 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.86 71.98 0.64 -4.33 16 2 C 0.03 1.25 2.65 -12.29 -0.03 1.22 16 3 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 4 C -0.53 -27.98 8.37 25.60 0.21 -27.77 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.25 5.30 84.66 0.45 1.69 16 7 N -0.91 -47.74 11.32 21.45 0.24 -47.49 16 8 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.53 20.39 6.99 87.66 0.61 21.00 16 13 O -0.55 -25.00 12.90 -3.07 -0.04 -25.04 16 14 N -0.66 -18.04 5.26 -303.61 -1.60 -19.63 16 15 C 0.17 4.43 6.29 38.09 0.24 4.67 16 16 C -0.12 -2.31 9.93 22.48 0.22 -2.09 16 17 C 0.12 2.72 7.26 22.34 0.16 2.88 16 18 F -0.12 -2.48 16.83 44.97 0.76 -1.72 16 19 C -0.05 -1.37 6.36 22.66 0.14 -1.23 16 20 Cl -0.02 -0.55 25.66 -2.72 -0.07 -0.62 16 21 C -0.09 -2.36 5.87 -20.10 -0.12 -2.48 16 22 C 0.53 14.20 8.26 70.31 0.58 14.79 16 23 O -0.51 -14.91 14.74 19.91 0.29 -14.62 16 24 O -0.50 -11.36 12.68 -56.26 -0.71 -12.08 16 25 C -0.07 -2.14 8.25 22.67 0.19 -1.95 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.75 7.47 -2.39 -0.02 1.73 16 28 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.43 8.56 8.11 -92.71 -0.75 7.81 16 31 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.44 5.21 9.11 -74.06 -0.67 4.54 16 33 H 0.15 5.14 5.78 -2.91 -0.02 5.12 16 Total: -1.00 -65.24 310.59 3.99 -61.25 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -0.21 Total: 9.01 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 3.30 Total: 6.41 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.35 Total: -67.13 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.46 Total: -51.74 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.76 Total: -1.72 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.07 Total: -0.62 kcal Total: -65.24 3.99 -61.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.973 kcal (2) G-P(sol) polarization free energy of solvation -65.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds