Wall clock time and date at job start Tue Mar 31 2020 11:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33384 * 125.20481 * 2 1 4 4 C 1.38425 * 114.92269 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.54344 * 179.97438 * 4 3 2 6 6 C 1.33394 * 114.91716 * 0.24763 * 4 3 2 7 7 S 1.76204 * 125.19905 * 179.75835 * 6 4 3 8 8 O 1.42105 * 106.39814 * 196.95445 * 7 6 4 9 9 O 1.42100 * 106.40396 * 329.87267 * 7 6 4 10 10 N 1.65602 * 107.21847 * 83.41216 * 7 6 4 11 11 C 1.46502 * 119.99846 * 65.00102 * 10 7 6 12 12 C 1.52997 * 109.46949 * 157.64615 * 11 10 7 13 13 C 1.50697 * 115.55087 * 65.75119 * 12 11 10 14 14 H 1.08002 * 120.00240 * 271.60190 * 13 12 11 15 15 C 1.37881 * 120.00051 * 91.60634 * 13 12 11 16 16 N 1.31518 * 119.99783 * 4.00683 * 15 13 12 17 17 Si 1.86805 * 120.00087 * 184.01881 * 15 13 12 18 18 H 1.48499 * 109.46999 * 59.99474 * 17 15 13 19 19 H 1.48497 * 109.46697 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46640 * 299.99369 * 17 15 13 21 21 C 1.53002 * 117.50086 * 280.07884 * 12 11 10 22 22 C 1.53002 * 117.49517 * 211.42041 * 12 11 10 23 23 S 1.75878 * 109.59549 * 359.63704 * 6 4 3 24 24 H 1.08999 * 109.46695 * 89.99805 * 1 2 3 25 25 H 1.09000 * 109.47020 * 209.99528 * 1 2 3 26 26 H 1.08995 * 109.46658 * 330.00184 * 1 2 3 27 27 H 1.08000 * 122.54223 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47078 * 96.55447 * 5 4 3 29 29 H 1.09004 * 109.46908 * 336.55844 * 5 4 3 30 30 H 1.08994 * 109.47234 * 216.55707 * 5 4 3 31 31 H 0.96991 * 119.99862 * 244.99080 * 10 7 6 32 32 H 1.09004 * 109.47075 * 277.64503 * 11 10 7 33 33 H 1.08996 * 109.47139 * 37.64420 * 11 10 7 34 34 H 0.96998 * 119.99807 * 185.00613 * 16 15 13 35 35 H 1.09000 * 117.49524 * 0.02562 * 21 12 11 36 36 H 1.08997 * 117.49964 * 145.02004 * 21 12 11 37 37 H 1.09001 * 117.49910 * 214.97562 * 22 12 11 38 38 H 1.08994 * 117.50332 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 0.0001 6 6 3.9751 -0.4479 -0.0042 7 16 5.6248 -1.0668 -0.0109 8 8 5.5412 -2.4274 -0.4122 9 8 6.4127 -0.1018 -0.6946 10 7 6.1522 -1.0736 1.5589 11 6 5.5119 -1.9501 2.5429 12 6 6.4737 -2.1987 3.7065 13 6 6.8104 -0.9900 4.5410 14 1 7.6411 -0.3574 4.2649 15 6 6.0580 -0.6916 5.6573 16 7 5.0968 -1.5040 6.0388 17 14 6.4038 0.8669 6.6275 18 1 6.2232 2.0487 5.7466 19 1 5.4633 0.9556 7.7732 20 1 7.7996 0.8353 7.1336 21 6 7.5708 -3.2459 3.5049 22 6 6.3830 -3.5482 4.4219 23 16 2.5210 -1.4372 0.0007 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5138 27 1 1.8670 2.0894 -0.0004 28 1 4.9952 2.1355 1.0210 29 1 4.2180 2.8552 -0.4095 30 1 5.5150 1.6530 -0.6115 31 1 6.8850 -0.4975 1.8268 32 1 4.6046 -1.4753 2.9165 33 1 5.2576 -2.8998 2.0724 34 1 4.5205 -1.2594 6.7797 35 1 7.6077 -3.7573 2.5430 36 1 8.5361 -3.0606 3.9761 37 1 6.5674 -3.5617 5.4961 38 1 5.6380 -4.2586 4.0638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404073077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:58 Heat of formation + Delta-G solvation = -46.078940 kcal Electronic energy + Delta-G solvation = -22427.652699 eV Core-core repulsion = 19102.576958 eV Total energy + Delta-G solvation = -3325.075741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.57431 -38.83472 -38.23081 -37.01987 -34.95514 -33.86454 -33.80757 -29.32684 -28.11093 -27.87464 -26.67933 -22.85328 -22.80203 -21.58332 -21.13450 -19.89298 -18.72442 -18.45998 -18.05534 -17.00143 -16.76964 -16.60742 -15.86847 -15.50622 -15.37355 -15.24841 -14.57002 -14.35203 -14.09447 -14.04590 -13.95885 -13.75942 -13.34956 -13.27835 -13.06604 -13.01548 -12.95927 -12.79308 -12.75152 -12.59542 -12.33036 -11.98182 -11.93849 -11.79454 -11.31762 -10.97800 -10.50620 -10.20512 -10.03142 -9.94960 -9.43475 -8.05849 -6.18706 -0.70206 -0.44323 0.41644 0.78726 1.42194 1.45330 1.47001 1.52899 2.07403 2.45617 2.66218 3.20723 3.44334 3.57687 3.64759 4.08343 4.15379 4.21896 4.43103 4.49895 4.55039 4.61613 4.66414 4.67714 4.72821 4.80746 4.94557 4.98591 5.05919 5.14619 5.24282 5.26104 5.34497 5.45422 5.63965 5.78428 5.80234 6.20429 6.42825 6.87713 7.49864 9.00746 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.005390 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.278251 B = 5193.882839 C = 5783.066187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.181 4.181 4 C 0.054 3.946 5 C -0.154 4.154 6 C -0.827 4.827 7 S 2.732 3.268 8 O -0.989 6.989 9 O -0.973 6.973 10 N -1.093 6.093 11 C 0.174 3.826 12 C 0.006 3.994 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.030 3.970 16 N -0.903 5.903 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.193 4.193 22 C -0.144 4.144 23 S 0.171 5.829 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.178 0.822 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.424 0.576 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 5.604 -11.550 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.243 4.243 3 C -0.211 4.211 4 C 0.036 3.964 5 C -0.212 4.212 6 C -1.030 5.030 7 S 2.821 3.179 8 O -0.980 6.980 9 O -0.963 6.963 10 N -0.854 5.854 11 C 0.047 3.953 12 C 0.004 3.996 13 C -0.541 4.541 14 H 0.077 0.923 15 C -0.171 4.171 16 N -0.540 5.540 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.231 4.231 22 C -0.183 4.183 23 S 0.438 5.562 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.195 0.805 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.201 3.541 -12.151 15.648 hybrid contribution 0.168 2.442 1.320 2.781 sum -9.033 5.983 -10.832 15.321 Atomic orbital electron populations 1.20676 0.84388 1.05090 1.04844 1.25587 1.02214 0.95642 1.00872 1.20498 0.91384 1.01331 1.07847 1.19032 0.96632 0.92371 0.88326 1.21422 0.98232 0.96772 1.04812 1.35275 1.26307 1.07581 1.33870 1.00408 0.72599 0.72719 0.72204 1.93522 1.87303 1.35506 1.81621 1.93467 1.68177 1.62226 1.72427 1.55066 1.47767 1.55292 1.27289 1.20648 0.95156 0.91101 0.88367 1.19092 0.95859 0.89940 0.94671 1.20596 1.15081 1.09694 1.08692 0.92298 1.25599 0.95502 0.98674 0.97307 1.70111 1.19651 1.35987 1.28294 0.85857 0.77796 0.81078 0.78337 1.19452 1.21528 1.20107 1.23043 0.94092 1.05907 1.00023 1.22389 0.99314 0.99583 0.97015 1.84200 0.92944 1.07859 1.71193 0.88007 0.90159 0.88012 0.80516 0.89337 0.87482 0.88332 0.73964 0.93412 0.92548 0.93167 0.89876 0.90291 0.91414 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 10.38 71.24 0.74 -0.49 16 2 C -0.12 -2.73 6.51 24.59 0.16 -2.57 16 3 C -0.18 -4.08 9.83 21.22 0.21 -3.87 16 4 C 0.05 1.49 5.80 -20.92 -0.12 1.37 16 5 C -0.15 -3.77 9.67 71.24 0.69 -3.08 16 6 C -0.83 -26.53 6.54 66.72 0.44 -26.10 16 7 S 2.73 97.37 5.67 -56.49 -0.32 97.05 16 8 O -0.99 -39.97 17.24 -128.00 -2.21 -42.17 16 9 O -0.97 -35.38 15.05 -128.00 -1.93 -37.31 16 10 N -1.09 -40.89 5.93 -187.49 -1.11 -42.00 16 11 C 0.17 7.36 6.10 86.38 0.53 7.89 16 12 C 0.01 0.30 1.67 -52.93 -0.09 0.21 16 13 C -0.50 -25.47 8.49 25.60 0.22 -25.25 16 14 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 15 C 0.03 1.55 5.41 84.65 0.46 2.01 16 16 N -0.90 -48.84 12.10 21.45 0.26 -48.58 16 17 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.19 -8.23 9.96 30.62 0.30 -7.92 16 22 C -0.14 -6.68 8.89 30.62 0.27 -6.41 16 23 S 0.17 4.93 23.14 -56.49 -1.31 3.62 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 1.88 8.10 -2.38 -0.02 1.86 16 30 H 0.10 2.72 5.32 -2.39 -0.01 2.71 16 31 H 0.42 15.29 8.40 -96.76 -0.81 14.48 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.06 2.31 7.57 -2.39 -0.02 2.29 16 34 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 37 H 0.07 3.43 7.80 -2.39 -0.02 3.41 16 38 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -63.58 345.75 -0.52 -64.09 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.27 Total: 26.32 kcal Atomic # 6 Polarization: -68.01 SS G_CDS: 3.80 Total: -64.21 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -0.85 Total: -90.58 kcal Atomic # 8 Polarization: -75.35 SS G_CDS: -4.13 Total: -79.48 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 102.30 SS G_CDS: -1.63 Total: 100.67 kcal Total: -63.58 -0.52 -64.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404073077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.015 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds