Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48506 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47478 * 300.00798 * 3 2 1 6 6 H 1.48505 * 109.46755 * 60.00479 * 3 2 1 7 7 C 1.38886 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00272 * 163.62476 * 7 2 1 9 9 N 1.37136 * 120.00044 * 343.61282 * 7 2 1 10 10 C 1.34781 * 120.00308 * 164.74431 * 9 7 2 11 11 O 1.21280 * 119.99984 * 174.95783 * 10 9 7 12 12 C 1.50700 * 119.99624 * 354.95319 * 10 9 7 13 13 O 1.45201 * 109.46789 * 179.97438 * 12 10 9 14 14 C 1.34893 * 116.99767 * 180.02562 * 13 12 10 15 15 O 1.21624 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.46470 * 119.99876 * 180.27844 * 14 13 12 17 17 C 1.36648 * 125.99765 * 179.43516 * 16 14 13 18 18 C 1.40309 * 106.70435 * 179.88506 * 17 16 14 19 19 C 1.35169 * 107.12593 * 0.38497 * 18 17 16 20 20 O 1.33921 * 108.78305 * 359.75736 * 19 18 17 21 21 C 1.39796 * 119.99938 * 344.74661 * 9 7 2 22 22 C 1.38957 * 120.07541 * 281.20246 * 21 9 7 23 23 C 1.38080 * 119.91747 * 179.78773 * 22 21 9 24 24 C 1.38304 * 120.08258 * 0.47054 * 23 22 21 25 25 C 1.38310 * 120.15065 * 359.78275 * 24 23 22 26 26 C 1.38073 * 120.08164 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00233 * 5.01151 * 1 2 3 28 28 H 1.09004 * 109.46941 * 60.00712 * 12 10 9 29 29 H 1.08994 * 109.47507 * 300.00204 * 12 10 9 30 30 H 1.07997 * 126.64261 * 0.02562 * 17 16 14 31 31 H 1.07996 * 126.43706 * 180.14172 * 18 17 16 32 32 H 1.07993 * 125.61003 * 179.78978 * 19 18 17 33 33 H 1.08002 * 120.04269 * 0.02562 * 22 21 9 34 34 H 1.08009 * 119.96180 * 180.25227 * 23 22 21 35 35 H 1.08000 * 119.92684 * 179.76463 * 24 23 22 36 36 H 1.08009 * 119.95815 * 180.02562 * 25 24 23 37 37 H 1.08003 * 120.04335 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0087 -1.2028 -0.0005 8 1 3.0559 -1.2216 -0.2642 9 7 1.3649 -2.3664 0.3340 10 6 1.9288 -3.5559 0.0446 11 8 1.4049 -4.5830 0.4209 12 6 3.2103 -3.6095 -0.7465 13 8 3.6116 -4.9936 -0.9245 14 6 4.7477 -5.2177 -1.6163 15 8 5.3855 -4.2810 -2.0581 16 6 5.2104 -6.5892 -1.8402 17 6 6.3319 -6.9561 -2.5293 18 6 6.3877 -8.3576 -2.4920 19 6 5.3075 -8.7806 -1.7983 20 8 4.6007 -7.7125 -1.4073 21 6 0.1235 -2.3190 0.9751 22 6 0.0534 -2.0601 2.3386 23 6 -1.1748 -2.0097 2.9677 24 6 -2.3336 -2.2261 2.2444 25 6 -2.2671 -2.4892 0.8882 26 6 -1.0428 -2.5362 0.2516 27 1 -0.4850 0.8368 -0.0734 28 1 3.9916 -3.0714 -0.2096 29 1 3.0551 -3.1476 -1.7214 30 1 7.0395 -6.2952 -3.0078 31 1 7.1485 -8.9813 -2.9375 32 1 5.0561 -9.8106 -1.5928 33 1 0.9581 -1.8948 2.9048 34 1 -1.2303 -1.8045 4.0267 35 1 -3.2926 -2.1898 2.7398 36 1 -3.1741 -2.6573 0.3263 37 1 -0.9916 -2.7421 -0.8074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005854898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = -50.445158 kcal Electronic energy + Delta-G solvation = -25259.697986 eV Core-core repulsion = 21356.236090 eV Total energy + Delta-G solvation = -3903.461897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.82222 -40.11914 -39.27444 -37.34735 -36.11721 -34.78951 -33.26264 -31.78543 -30.55056 -29.91650 -29.53055 -27.47209 -25.05403 -23.94673 -21.98588 -21.66443 -21.53921 -20.51883 -19.42443 -18.58914 -17.99473 -16.88141 -16.74677 -16.28371 -15.80184 -15.71286 -15.50696 -14.80002 -14.52725 -14.32793 -13.73286 -13.52232 -13.41095 -13.17495 -12.93119 -12.85338 -12.47705 -12.31174 -12.17730 -11.64283 -11.54550 -11.22071 -10.99417 -10.78538 -10.56941 -10.44688 -10.35938 -10.28154 -10.25698 -9.51318 -8.94255 -8.71820 -8.23408 -7.89827 -7.62487 -6.34465 -4.14136 0.79952 2.12097 2.28931 2.44168 2.48513 2.90566 2.98045 3.02859 3.15838 3.18673 3.56944 3.95527 4.38481 4.66448 4.67079 4.80047 4.97126 5.00418 5.36874 5.51874 5.57159 5.69860 5.73056 5.77617 5.84786 5.89263 5.99446 6.07856 6.38212 6.48535 6.53424 6.68961 6.75914 7.01278 7.20962 7.29803 7.42543 7.53086 7.70522 7.77239 7.91486 8.32293 8.87355 9.19449 9.62455 10.50059 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003710 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.687180 B = 7545.508987 C = 8975.969867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.049 3.951 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.406 5.406 10 C 0.463 3.537 11 O -0.574 6.574 12 C 0.072 3.928 13 O -0.321 6.321 14 C 0.547 3.453 15 O -0.490 6.490 16 C -0.054 4.054 17 C -0.113 4.113 18 C -0.231 4.231 19 C 0.003 3.997 20 O -0.144 6.144 21 C 0.238 3.762 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.121 4.121 26 C -0.066 4.066 27 H 0.274 0.726 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.213 0.787 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -9.504 -2.350 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.489 4.489 8 H 0.122 0.878 9 N -0.124 5.124 10 C 0.252 3.748 11 O -0.457 6.457 12 C -0.004 4.004 13 O -0.235 6.235 14 C 0.391 3.609 15 O -0.380 6.380 16 C -0.104 4.104 17 C -0.133 4.133 18 C -0.250 4.250 19 C -0.068 4.068 20 O -0.038 6.038 21 C 0.147 3.853 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.140 4.140 26 C -0.085 4.085 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.229 0.771 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.826 -9.519 -2.046 11.346 hybrid contribution 0.637 1.261 -0.277 1.440 sum 6.463 -8.258 -2.323 10.741 Atomic orbital electron populations 1.69944 1.05821 1.28108 1.43759 1.25276 0.95475 0.99823 0.95403 0.85946 0.79843 0.81316 0.78140 1.19040 1.20477 1.20323 1.19686 0.95423 0.83276 1.50564 0.87753 1.41183 1.16398 1.04932 1.49874 1.19449 0.87011 0.83695 0.84647 1.90633 1.65366 1.33169 1.56579 1.22749 0.97264 0.77927 1.02484 1.86669 1.38604 1.31813 1.66460 1.19228 0.79464 0.86272 0.75939 1.90945 1.56476 1.42062 1.48494 1.20862 0.97228 0.84533 1.07798 1.21987 0.96586 0.95834 0.98902 1.21846 1.01763 0.94679 1.06711 1.24572 0.92142 0.91792 0.98284 1.84245 1.45803 1.13688 1.60065 1.17043 0.84762 0.93509 0.89941 1.20979 0.97207 1.01797 0.94091 1.20664 0.92500 1.02358 0.98630 1.20755 0.97196 1.03719 0.94521 1.20686 0.96623 1.02135 0.94561 1.20805 0.91614 0.97608 0.98486 0.91512 0.88699 0.88180 0.81826 0.82312 0.77081 0.87397 0.87515 0.87681 0.87481 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.23 10.34 55.49 0.57 -20.66 16 2 C 0.05 1.19 5.24 -17.49 -0.09 1.10 16 3 Si 0.92 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.36 -8.90 9.19 -14.94 -0.14 -9.04 16 8 H 0.10 2.38 6.46 -52.48 -0.34 2.05 16 9 N -0.41 -10.15 2.66 -58.98 -0.16 -10.30 16 10 C 0.46 11.35 7.66 -10.98 -0.08 11.26 16 11 O -0.57 -15.58 16.48 -14.10 -0.23 -15.81 16 12 C 0.07 1.49 4.50 36.01 0.16 1.66 16 13 O -0.32 -6.54 9.77 -48.35 -0.47 -7.02 16 14 C 0.55 9.74 7.93 34.05 0.27 10.01 16 15 O -0.49 -9.15 16.66 -19.36 -0.32 -9.48 16 16 C -0.05 -0.80 7.18 -36.84 -0.26 -1.07 16 17 C -0.11 -1.33 10.62 -39.38 -0.42 -1.75 16 18 C -0.23 -2.07 10.87 -39.90 -0.43 -2.51 16 19 C 0.00 0.03 12.08 29.64 0.36 0.38 16 20 O -0.14 -2.04 10.67 4.72 0.05 -1.99 16 21 C 0.24 5.87 2.29 -83.69 -0.19 5.68 16 22 C -0.12 -2.79 9.95 -39.37 -0.39 -3.18 16 23 C -0.12 -2.47 10.04 -39.62 -0.40 -2.87 16 24 C -0.14 -2.76 10.04 -39.53 -0.40 -3.16 16 25 C -0.12 -2.48 10.04 -39.62 -0.40 -2.88 16 26 C -0.07 -1.55 8.66 -39.37 -0.34 -1.89 16 27 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 28 H 0.10 1.83 7.52 -51.93 -0.39 1.44 16 29 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 30 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.11 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -31.43 338.67 -6.91 -38.34 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.67 Total: 6.06 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.76 Total: 1.76 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.42 Total: -30.96 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.98 Total: -34.29 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.43 -6.91 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005854898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.101 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds