Wall clock time and date at job start Tue Mar 31 2020 11:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48506 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47478 * 300.00798 * 3 2 1 6 6 H 1.48505 * 109.46755 * 60.00479 * 3 2 1 7 7 C 1.38886 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00272 * 163.62476 * 7 2 1 9 9 N 1.37136 * 120.00044 * 343.61282 * 7 2 1 10 10 C 1.34781 * 120.00308 * 164.74431 * 9 7 2 11 11 O 1.21280 * 119.99984 * 174.95783 * 10 9 7 12 12 C 1.50700 * 119.99624 * 354.95319 * 10 9 7 13 13 O 1.45201 * 109.46789 * 179.97438 * 12 10 9 14 14 C 1.34893 * 116.99767 * 180.02562 * 13 12 10 15 15 O 1.21624 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.46470 * 119.99876 * 180.27844 * 14 13 12 17 17 C 1.36648 * 125.99765 * 179.43516 * 16 14 13 18 18 C 1.40309 * 106.70435 * 179.88506 * 17 16 14 19 19 C 1.35169 * 107.12593 * 0.38497 * 18 17 16 20 20 O 1.33921 * 108.78305 * 359.75736 * 19 18 17 21 21 C 1.39796 * 119.99938 * 344.74661 * 9 7 2 22 22 C 1.38957 * 120.07541 * 281.20246 * 21 9 7 23 23 C 1.38080 * 119.91747 * 179.78773 * 22 21 9 24 24 C 1.38304 * 120.08258 * 0.47054 * 23 22 21 25 25 C 1.38310 * 120.15065 * 359.78275 * 24 23 22 26 26 C 1.38073 * 120.08164 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00233 * 5.01151 * 1 2 3 28 28 H 1.09004 * 109.46941 * 60.00712 * 12 10 9 29 29 H 1.08994 * 109.47507 * 300.00204 * 12 10 9 30 30 H 1.07997 * 126.64261 * 0.02562 * 17 16 14 31 31 H 1.07996 * 126.43706 * 180.14172 * 18 17 16 32 32 H 1.07993 * 125.61003 * 179.78978 * 19 18 17 33 33 H 1.08002 * 120.04269 * 0.02562 * 22 21 9 34 34 H 1.08009 * 119.96180 * 180.25227 * 23 22 21 35 35 H 1.08000 * 119.92684 * 179.76463 * 24 23 22 36 36 H 1.08009 * 119.95815 * 180.02562 * 25 24 23 37 37 H 1.08003 * 120.04335 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0087 -1.2028 -0.0005 8 1 3.0559 -1.2216 -0.2642 9 7 1.3649 -2.3664 0.3340 10 6 1.9288 -3.5559 0.0446 11 8 1.4049 -4.5830 0.4209 12 6 3.2103 -3.6095 -0.7465 13 8 3.6116 -4.9936 -0.9245 14 6 4.7477 -5.2177 -1.6163 15 8 5.3855 -4.2810 -2.0581 16 6 5.2104 -6.5892 -1.8402 17 6 6.3319 -6.9561 -2.5293 18 6 6.3877 -8.3576 -2.4920 19 6 5.3075 -8.7806 -1.7983 20 8 4.6007 -7.7125 -1.4073 21 6 0.1235 -2.3190 0.9751 22 6 0.0534 -2.0601 2.3386 23 6 -1.1748 -2.0097 2.9677 24 6 -2.3336 -2.2261 2.2444 25 6 -2.2671 -2.4892 0.8882 26 6 -1.0428 -2.5362 0.2516 27 1 -0.4850 0.8368 -0.0734 28 1 3.9916 -3.0714 -0.2096 29 1 3.0551 -3.1476 -1.7214 30 1 7.0395 -6.2952 -3.0078 31 1 7.1485 -8.9813 -2.9375 32 1 5.0561 -9.8106 -1.5928 33 1 0.9581 -1.8948 2.9048 34 1 -1.2303 -1.8045 4.0267 35 1 -3.2926 -2.1898 2.7398 36 1 -3.1741 -2.6573 0.3263 37 1 -0.9916 -2.7421 -0.8074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005854898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:02 Heat of formation + Delta-G solvation = -67.389180 kcal Electronic energy + Delta-G solvation = -25260.432734 eV Core-core repulsion = 21356.236090 eV Total energy + Delta-G solvation = -3904.196645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.74514 -41.66486 -40.96969 -39.05394 -37.63117 -36.65552 -34.16090 -33.67842 -31.77998 -31.58902 -31.00257 -29.07027 -26.93144 -25.15748 -23.35053 -23.22089 -22.78628 -21.68446 -21.27246 -19.80540 -19.70308 -18.18171 -18.07136 -17.93403 -17.28131 -17.03235 -16.96241 -16.54110 -16.24425 -16.01181 -15.28960 -15.16359 -14.67343 -14.30843 -14.12794 -14.01395 -13.94366 -13.87796 -13.61533 -13.40378 -13.25919 -12.90697 -12.74770 -12.24436 -12.18046 -12.09114 -12.00925 -11.94307 -11.32154 -11.12537 -10.63913 -10.09083 -9.83956 -9.59134 -9.36874 -8.17886 -6.06057 -0.27437 0.72618 0.78980 1.09692 1.28346 1.33415 1.45742 1.57348 1.71908 1.76081 1.90329 2.25234 2.80717 3.01532 3.21016 3.60287 3.85664 3.89699 4.01711 4.07376 4.15404 4.22996 4.27706 4.38472 4.48074 4.73392 4.83629 4.86487 4.88619 5.03687 5.07084 5.32280 5.34254 5.35058 5.60448 5.75358 5.78413 5.80460 5.97282 6.19664 6.40088 6.52294 6.97662 7.32181 7.74903 8.64304 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003710 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.687180 B = 7545.508987 C = 8975.969867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.012 3.988 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.384 4.384 8 H 0.114 0.886 9 N -0.409 5.409 10 C 0.448 3.552 11 O -0.613 6.613 12 C 0.084 3.916 13 O -0.342 6.342 14 C 0.545 3.455 15 O -0.510 6.510 16 C -0.108 4.108 17 C -0.092 4.092 18 C -0.228 4.228 19 C 0.022 3.978 20 O -0.175 6.175 21 C 0.207 3.793 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.120 4.120 26 C -0.094 4.094 27 H 0.274 0.726 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.176 0.824 31 H 0.199 0.801 32 H 0.259 0.741 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -10.205 -2.140 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.509 4.509 8 H 0.132 0.868 9 N -0.126 5.126 10 C 0.238 3.762 11 O -0.499 6.499 12 C 0.007 3.993 13 O -0.257 6.257 14 C 0.392 3.608 15 O -0.402 6.402 16 C -0.158 4.158 17 C -0.111 4.111 18 C -0.246 4.246 19 C -0.048 4.048 20 O -0.071 6.071 21 C 0.117 3.883 22 C -0.168 4.168 23 C -0.137 4.137 24 C -0.155 4.155 25 C -0.139 4.139 26 C -0.114 4.114 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.194 0.806 31 H 0.216 0.784 32 H 0.275 0.725 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.265 -10.215 -1.846 12.125 hybrid contribution 0.481 1.326 -0.354 1.454 sum 6.746 -8.889 -2.199 11.374 Atomic orbital electron populations 1.70096 1.07016 1.28649 1.43769 1.26081 0.96231 1.02486 0.94666 0.84957 0.78978 0.77156 0.77843 1.18209 1.20160 1.20436 1.20068 0.96075 0.83566 1.51171 0.86850 1.41424 1.16663 1.05202 1.49322 1.20025 0.88069 0.83231 0.84833 1.90572 1.66766 1.34231 1.58358 1.22500 0.95812 0.78884 1.02055 1.86668 1.40285 1.31186 1.67591 1.19709 0.78337 0.87797 0.74994 1.90902 1.56735 1.43085 1.49452 1.20612 0.99483 0.83663 1.12006 1.22389 0.94807 0.97656 0.96288 1.22311 1.02519 0.93406 1.06405 1.25681 0.91026 0.92370 0.95714 1.84220 1.47207 1.14504 1.61138 1.17396 0.84926 0.95044 0.90947 1.21146 0.98531 1.03364 0.93710 1.21110 0.91583 1.00624 1.00432 1.21248 0.98808 1.01523 0.93897 1.21086 0.96423 1.00694 0.95655 1.20843 0.92956 0.99749 0.97815 0.91599 0.87685 0.87780 0.80608 0.78368 0.72517 0.88059 0.83971 0.83204 0.84478 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.08 10.34 21.65 0.22 -43.85 16 2 C 0.01 0.59 5.24 84.91 0.44 1.04 16 3 Si 0.99 39.09 29.59 68.60 2.03 41.12 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.38 -19.36 9.19 84.02 0.77 -18.59 16 8 H 0.11 5.33 6.46 -2.91 -0.02 5.31 16 9 N -0.41 -21.47 2.66 -458.89 -1.22 -22.69 16 10 C 0.45 23.32 7.66 87.66 0.67 23.99 16 11 O -0.61 -35.35 16.48 15.77 0.26 -35.09 16 12 C 0.08 3.69 4.50 71.24 0.32 4.01 16 13 O -0.34 -14.86 9.77 -51.07 -0.50 -15.36 16 14 C 0.55 20.43 7.93 69.97 0.55 20.99 16 15 O -0.51 -19.87 16.66 19.43 0.32 -19.55 16 16 C -0.11 -3.29 7.18 24.04 0.17 -3.12 16 17 C -0.09 -2.02 10.62 22.40 0.24 -1.78 16 18 C -0.23 -3.32 10.87 22.07 0.24 -3.08 16 19 C 0.02 0.34 12.08 67.11 0.81 1.15 16 20 O -0.18 -4.92 10.67 -4.97 -0.05 -4.97 16 21 C 0.21 10.59 2.29 38.22 0.09 10.68 16 22 C -0.15 -6.94 9.95 22.40 0.22 -6.72 16 23 C -0.12 -4.60 10.04 22.25 0.22 -4.38 16 24 C -0.14 -4.91 10.04 22.30 0.22 -4.69 16 25 C -0.12 -4.80 10.04 22.25 0.22 -4.58 16 26 C -0.09 -4.59 8.66 22.40 0.19 -4.39 16 27 H 0.27 13.32 8.32 -92.71 -0.77 12.55 16 28 H 0.11 4.30 7.52 -2.38 -0.02 4.28 16 29 H 0.10 4.39 8.14 -2.39 -0.02 4.37 16 30 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.26 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -72.75 338.67 7.57 -65.18 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.11 Total: 24.67 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.40 Total: 10.53 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -1.00 Total: -66.54 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: 0.03 Total: -74.96 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -72.75 7.57 -65.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005854898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.211 kcal (2) G-P(sol) polarization free energy of solvation -72.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds