Wall clock time and date at job start Tue Mar 31 2020 11:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86795 * 119.99867 * 2 1 4 4 H 1.48504 * 109.47011 * 274.98717 * 3 2 1 5 5 H 1.48500 * 109.47483 * 34.99064 * 3 2 1 6 6 H 1.48496 * 109.47321 * 154.99002 * 3 2 1 7 7 C 1.39905 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 147.60938 * 7 2 1 9 9 C 1.41148 * 120.00212 * 327.61639 * 7 2 1 10 10 C 1.40870 * 120.16059 * 157.94700 * 9 7 2 11 11 C 1.36383 * 119.82170 * 180.02562 * 10 9 7 12 12 C 1.39472 * 120.17167 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83443 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99705 * 37.76043 * 13 12 11 15 15 O 1.21288 * 120.00063 * 356.70317 * 14 13 12 16 16 C 1.50700 * 119.99754 * 176.69980 * 14 13 12 17 17 O 1.45205 * 109.47086 * 180.02562 * 16 14 13 18 18 C 1.34893 * 117.00321 * 180.02562 * 17 16 14 19 19 O 1.21627 * 119.99826 * 359.97438 * 18 17 16 20 20 C 1.46468 * 120.00260 * 179.97438 * 18 17 16 21 21 C 1.36636 * 125.99514 * 180.02562 * 20 18 17 22 22 C 1.40314 * 106.70210 * 179.97438 * 21 20 18 23 23 C 1.35165 * 107.12482 * 359.97438 * 22 21 20 24 24 O 1.33915 * 108.78492 * 0.02562 * 23 22 21 25 25 C 1.39477 * 120.33338 * 0.25846 * 12 11 10 26 26 C 1.36376 * 120.17051 * 359.47654 * 25 12 11 27 27 H 0.97007 * 120.00086 * 359.97438 * 1 2 3 28 28 H 1.07990 * 120.09424 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91198 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99717 * 217.76702 * 13 12 11 31 31 H 1.09000 * 109.47344 * 60.00523 * 16 14 13 32 32 H 1.08993 * 109.47386 * 299.99879 * 16 14 13 33 33 H 1.08000 * 126.65030 * 359.96808 * 21 20 18 34 34 H 1.08003 * 126.43768 * 179.97438 * 22 21 20 35 35 H 1.07999 * 125.60542 * 180.26457 * 23 22 21 36 36 H 1.08006 * 119.91713 * 179.74193 * 25 12 11 37 37 H 1.07999 * 120.08977 * 180.26059 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4969 2.6199 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0082 -1.2116 0.0005 8 1 2.9622 -1.2846 -0.5005 9 6 1.4672 -2.3387 0.6557 10 6 1.8853 -3.6349 0.2961 11 6 1.3576 -4.7191 0.9333 12 6 0.4059 -4.5469 1.9382 13 7 -0.1287 -5.6588 2.5839 14 6 0.6565 -6.7180 2.8632 15 8 1.8135 -6.7278 2.4994 16 6 0.0969 -7.8900 3.6276 17 8 1.1317 -8.8938 3.8004 18 6 0.7919 -10.0151 4.4688 19 8 -0.3390 -10.1493 4.8959 20 6 1.7847 -11.0710 4.6803 21 6 1.5745 -12.2510 5.3363 22 6 2.7884 -12.9539 5.3006 23 6 3.6753 -12.1830 4.6327 24 8 3.0670 -11.0494 4.2608 25 6 -0.0174 -3.2669 2.2957 26 6 0.5051 -2.1729 1.6713 27 1 -0.4850 0.8401 0.0004 28 1 2.6218 -3.7699 -0.4821 29 1 1.6768 -5.7135 0.6585 30 1 -1.0662 -5.6710 2.8325 31 1 -0.7378 -8.3198 3.0738 32 1 -0.2498 -7.5543 4.6048 33 1 0.6528 -12.5792 5.7937 34 1 2.9784 -13.9280 5.7267 35 1 4.7041 -12.4406 4.4288 36 1 -0.7578 -3.1416 3.0720 37 1 0.1795 -1.1822 1.9521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007747749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:05 Heat of formation + Delta-G solvation = -72.425819 kcal Electronic energy + Delta-G solvation = -24008.941028 eV Core-core repulsion = 20104.525978 eV Total energy + Delta-G solvation = -3904.415050 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06934 -40.60538 -39.46934 -37.37514 -36.55283 -34.50304 -33.50488 -33.12052 -30.86683 -29.78143 -29.48928 -28.19119 -25.02580 -24.04816 -22.20618 -21.76123 -20.96156 -20.75732 -19.85390 -18.92316 -17.59881 -17.43745 -17.15701 -17.03304 -16.20591 -16.11435 -15.99206 -15.22757 -14.72737 -14.21987 -13.98876 -13.62277 -13.43370 -13.40940 -13.09725 -12.90693 -12.75611 -12.66012 -12.12312 -12.02537 -11.49894 -11.23096 -11.16875 -10.98469 -10.97824 -10.56831 -10.49579 -10.20618 -9.79093 -9.50673 -9.19185 -9.11684 -8.74954 -7.58539 -7.20141 -6.92794 -4.31010 0.49805 1.88350 1.88684 2.48463 2.55815 2.61630 2.90008 3.03364 3.06543 3.09720 3.28512 3.67660 3.86795 4.35250 4.43661 4.46036 4.58855 4.82138 4.96295 4.99249 5.13968 5.31595 5.43286 5.63944 5.84663 5.92629 6.15519 6.38619 6.43674 6.70555 6.89957 6.96394 7.09044 7.23840 7.32723 7.52495 7.63181 7.83716 7.98434 8.19120 8.22181 8.50689 8.65594 8.80428 8.94761 9.98297 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.002143 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.574975 B =13062.331696 C =13619.238749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.026 4.026 13 N -0.642 5.642 14 C 0.497 3.503 15 O -0.510 6.510 16 C 0.052 3.948 17 O -0.317 6.317 18 C 0.553 3.447 19 O -0.489 6.489 20 C -0.063 4.063 21 C -0.106 4.106 22 C -0.232 4.232 23 C 0.011 3.989 24 O -0.145 6.145 25 C -0.099 4.099 26 C -0.172 4.172 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.397 0.603 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.215 0.785 36 H 0.090 0.910 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -18.585 9.472 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.117 4.117 13 N -0.286 5.286 14 C 0.282 3.718 15 O -0.384 6.384 16 C -0.026 4.026 17 O -0.231 6.231 18 C 0.398 3.602 19 O -0.379 6.379 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.250 4.250 23 C -0.060 4.060 24 O -0.038 6.038 25 C -0.119 4.119 26 C -0.192 4.192 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.230 0.770 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.109 0.891 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.704 -18.201 9.143 20.381 hybrid contribution -0.391 0.603 0.281 0.772 sum 0.313 -17.598 9.424 19.966 Atomic orbital electron populations 1.69946 1.08100 1.29954 1.31028 1.25961 0.94384 1.01596 0.91513 0.86491 0.81534 0.80726 0.79236 1.19430 1.19859 1.18052 1.19528 1.05385 0.93754 1.30391 0.89921 1.17611 0.89632 0.91867 0.89822 1.20600 1.07097 0.92273 1.04437 1.20310 0.96237 0.98086 0.93732 1.16990 1.07868 0.84479 1.02391 1.42705 1.11956 1.15750 1.58235 1.19865 0.86855 0.83725 0.81371 1.90753 1.16949 1.79291 1.51444 1.22836 0.89646 0.87509 1.02568 1.86725 1.41694 1.26578 1.68151 1.19223 0.85209 0.80430 0.75388 1.90953 1.19480 1.79119 1.48380 1.20688 0.83795 0.97502 1.09327 1.22012 1.00286 0.91806 0.98457 1.21887 0.93066 1.03133 1.06959 1.24643 0.99471 0.84008 0.97893 1.84243 1.21358 1.37469 1.60763 1.20159 1.00611 0.91453 0.99639 1.20622 1.02559 0.96656 0.99321 0.90531 0.88633 0.87929 0.76980 0.87994 0.87908 0.81731 0.82106 0.76856 0.89139 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.16 11.78 55.55 0.65 -18.50 16 2 C 0.09 2.14 4.77 -17.34 -0.08 2.06 16 3 Si 0.90 18.04 29.66 -169.99 -5.04 13.00 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -12.15 8.94 -37.85 -0.34 -12.48 16 8 H 0.08 2.10 8.02 -52.48 -0.42 1.68 16 9 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 10 C -0.22 -5.71 9.74 -39.25 -0.38 -6.09 16 11 C -0.06 -1.54 8.59 -39.79 -0.34 -1.88 16 12 C -0.03 -0.57 6.25 -83.57 -0.52 -1.09 16 13 N -0.64 -11.10 5.30 -9.74 -0.05 -11.15 16 14 C 0.50 8.75 7.72 -10.99 -0.08 8.66 16 15 O -0.51 -11.34 14.12 -14.11 -0.20 -11.54 16 16 C 0.05 0.68 5.96 36.01 0.21 0.90 16 17 O -0.32 -4.81 9.77 -48.35 -0.47 -5.28 16 18 C 0.55 7.46 7.93 34.04 0.27 7.73 16 19 O -0.49 -6.87 16.66 -19.36 -0.32 -7.19 16 20 C -0.06 -0.74 7.18 -36.85 -0.26 -1.00 16 21 C -0.11 -0.95 10.62 -39.38 -0.42 -1.37 16 22 C -0.23 -1.56 10.87 -39.89 -0.43 -2.00 16 23 C 0.01 0.08 12.08 29.64 0.36 0.43 16 24 O -0.14 -1.66 10.67 4.73 0.05 -1.61 16 25 C -0.10 -2.22 9.90 -39.79 -0.39 -2.62 16 26 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 28 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 29 H 0.10 2.45 6.45 -52.49 -0.34 2.11 16 30 H 0.40 5.20 8.82 -40.82 -0.36 4.84 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.21 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.11 2.76 6.52 -52.49 -0.34 2.42 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -32.88 338.80 -7.19 -40.07 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.56 Total: 8.13 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.36 Total: -11.03 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.60 Total: -29.65 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.94 Total: -25.63 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.04 Total: 13.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.88 -7.19 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007747749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.352 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds