Wall clock time and date at job start Tue Mar 31 2020 11:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86795 * 119.99867 * 2 1 4 4 H 1.48504 * 109.47011 * 274.98717 * 3 2 1 5 5 H 1.48500 * 109.47483 * 34.99064 * 3 2 1 6 6 H 1.48496 * 109.47321 * 154.99002 * 3 2 1 7 7 C 1.39905 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 147.60938 * 7 2 1 9 9 C 1.41148 * 120.00212 * 327.61639 * 7 2 1 10 10 C 1.40870 * 120.16059 * 157.94700 * 9 7 2 11 11 C 1.36383 * 119.82170 * 180.02562 * 10 9 7 12 12 C 1.39472 * 120.17167 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83443 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99705 * 37.76043 * 13 12 11 15 15 O 1.21288 * 120.00063 * 356.70317 * 14 13 12 16 16 C 1.50700 * 119.99754 * 176.69980 * 14 13 12 17 17 O 1.45205 * 109.47086 * 180.02562 * 16 14 13 18 18 C 1.34893 * 117.00321 * 180.02562 * 17 16 14 19 19 O 1.21627 * 119.99826 * 359.97438 * 18 17 16 20 20 C 1.46468 * 120.00260 * 179.97438 * 18 17 16 21 21 C 1.36636 * 125.99514 * 180.02562 * 20 18 17 22 22 C 1.40314 * 106.70210 * 179.97438 * 21 20 18 23 23 C 1.35165 * 107.12482 * 359.97438 * 22 21 20 24 24 O 1.33915 * 108.78492 * 0.02562 * 23 22 21 25 25 C 1.39477 * 120.33338 * 0.25846 * 12 11 10 26 26 C 1.36376 * 120.17051 * 359.47654 * 25 12 11 27 27 H 0.97007 * 120.00086 * 359.97438 * 1 2 3 28 28 H 1.07990 * 120.09424 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91198 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99717 * 217.76702 * 13 12 11 31 31 H 1.09000 * 109.47344 * 60.00523 * 16 14 13 32 32 H 1.08993 * 109.47386 * 299.99879 * 16 14 13 33 33 H 1.08000 * 126.65030 * 359.96808 * 21 20 18 34 34 H 1.08003 * 126.43768 * 179.97438 * 22 21 20 35 35 H 1.07999 * 125.60542 * 180.26457 * 23 22 21 36 36 H 1.08006 * 119.91713 * 179.74193 * 25 12 11 37 37 H 1.07999 * 120.08977 * 180.26059 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4969 2.6199 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0082 -1.2116 0.0005 8 1 2.9622 -1.2846 -0.5005 9 6 1.4672 -2.3387 0.6557 10 6 1.8853 -3.6349 0.2961 11 6 1.3576 -4.7191 0.9333 12 6 0.4059 -4.5469 1.9382 13 7 -0.1287 -5.6588 2.5839 14 6 0.6565 -6.7180 2.8632 15 8 1.8135 -6.7278 2.4994 16 6 0.0969 -7.8900 3.6276 17 8 1.1317 -8.8938 3.8004 18 6 0.7919 -10.0151 4.4688 19 8 -0.3390 -10.1493 4.8959 20 6 1.7847 -11.0710 4.6803 21 6 1.5745 -12.2510 5.3363 22 6 2.7884 -12.9539 5.3006 23 6 3.6753 -12.1830 4.6327 24 8 3.0670 -11.0494 4.2608 25 6 -0.0174 -3.2669 2.2957 26 6 0.5051 -2.1729 1.6713 27 1 -0.4850 0.8401 0.0004 28 1 2.6218 -3.7699 -0.4821 29 1 1.6768 -5.7135 0.6585 30 1 -1.0662 -5.6710 2.8325 31 1 -0.7378 -8.3198 3.0738 32 1 -0.2498 -7.5543 4.6048 33 1 0.6528 -12.5792 5.7937 34 1 2.9784 -13.9280 5.7267 35 1 4.7041 -12.4406 4.4288 36 1 -0.7578 -3.1416 3.0720 37 1 0.1795 -1.1822 1.9521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007747749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:05 Heat of formation + Delta-G solvation = -92.384279 kcal Electronic energy + Delta-G solvation = -24009.806492 eV Core-core repulsion = 20104.525978 eV Total energy + Delta-G solvation = -3905.280514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.75303 -41.73140 -40.92267 -39.09034 -37.69290 -36.22638 -34.87796 -34.16945 -31.84317 -31.47727 -31.10021 -29.55988 -26.68777 -25.04805 -23.51201 -22.83747 -22.61969 -21.71874 -21.42515 -19.79744 -19.31733 -18.86629 -18.12928 -18.08419 -17.69177 -17.08606 -17.01155 -16.90909 -16.10148 -15.78720 -15.44512 -15.07716 -14.51862 -14.32180 -14.15833 -14.02114 -13.97374 -13.91753 -13.82515 -13.62460 -13.34309 -12.85416 -12.70209 -12.34884 -12.22052 -12.03662 -11.93438 -11.61750 -11.19923 -11.13216 -10.84295 -10.52646 -9.85006 -9.50305 -9.05567 -8.75713 -6.25737 -0.29106 0.75216 0.98115 1.11879 1.26678 1.35246 1.40595 1.53198 1.66829 1.73981 1.84527 2.19230 2.45057 2.62262 3.51665 3.63441 3.70415 3.85670 3.95851 4.00804 4.02944 4.37905 4.46135 4.47292 4.81691 4.86056 4.87950 4.95397 5.08569 5.12511 5.24132 5.32838 5.39704 5.61893 5.78133 5.83920 5.98906 6.05531 6.32556 6.38098 6.58402 6.63548 6.86980 6.95622 7.28429 8.18488 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.002143 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.574975 B =13062.331696 C =13619.238749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.052 3.948 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.247 4.247 11 C -0.076 4.076 12 C -0.013 4.013 13 N -0.631 5.631 14 C 0.499 3.501 15 O -0.561 6.561 16 C 0.059 3.941 17 O -0.343 6.343 18 C 0.554 3.446 19 O -0.504 6.504 20 C -0.111 4.111 21 C -0.091 4.091 22 C -0.231 4.231 23 C 0.021 3.979 24 O -0.175 6.175 25 C -0.095 4.095 26 C -0.190 4.190 27 H 0.295 0.705 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.421 0.579 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.178 0.822 34 H 0.196 0.804 35 H 0.255 0.745 36 H 0.128 0.872 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -19.904 11.157 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.267 4.267 11 C -0.096 4.096 12 C -0.105 4.105 13 N -0.278 5.278 14 C 0.286 3.714 15 O -0.439 6.439 16 C -0.017 4.017 17 O -0.259 6.259 18 C 0.401 3.599 19 O -0.395 6.395 20 C -0.161 4.161 21 C -0.111 4.111 22 C -0.249 4.249 23 C -0.049 4.049 24 O -0.071 6.071 25 C -0.115 4.115 26 C -0.210 4.210 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.259 0.741 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.196 0.804 34 H 0.213 0.787 35 H 0.271 0.729 36 H 0.146 0.854 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.150 -19.548 10.845 22.355 hybrid contribution -0.214 0.774 -0.190 0.825 sum -0.064 -18.774 10.654 21.587 Atomic orbital electron populations 1.69936 1.09344 1.31569 1.31024 1.26737 0.95114 1.04460 0.90509 0.85359 0.79621 0.76107 0.79690 1.18405 1.18383 1.18607 1.19722 1.05753 0.95304 1.32204 0.90681 1.17930 0.90713 0.92344 0.90850 1.20722 1.07947 0.92774 1.05217 1.20418 0.97077 0.97481 0.94584 1.17046 1.06316 0.86042 1.01131 1.42558 1.13277 1.14433 1.57551 1.20615 0.86081 0.84331 0.80358 1.90738 1.19372 1.80357 1.53420 1.22842 0.89396 0.85797 1.03664 1.86705 1.42778 1.27512 1.68889 1.19451 0.85618 0.80099 0.74754 1.90921 1.19983 1.79378 1.49186 1.20699 0.84271 0.98446 1.12659 1.22392 1.01606 0.90701 0.96400 1.22318 0.91761 1.04222 1.06598 1.25619 1.00937 0.82396 0.95958 1.84220 1.21552 1.39515 1.61792 1.20449 1.00626 0.90681 0.99701 1.20667 1.03222 0.97286 0.99848 0.89370 0.89002 0.88202 0.74096 0.84959 0.84978 0.80424 0.78719 0.72942 0.85437 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.12 11.78 21.82 0.26 -39.86 16 2 C 0.05 2.57 4.77 85.24 0.41 2.97 16 3 Si 0.97 37.24 29.66 68.60 2.03 39.28 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.50 -27.44 8.94 23.39 0.21 -27.23 16 8 H 0.08 4.03 8.02 -2.91 -0.02 4.01 16 9 C 0.08 4.67 5.57 -21.28 -0.12 4.55 16 10 C -0.25 -13.18 9.74 22.48 0.22 -12.96 16 11 C -0.08 -3.76 8.59 22.13 0.19 -3.57 16 12 C -0.01 -0.55 6.25 38.56 0.24 -0.31 16 13 N -0.63 -20.80 5.30 -303.11 -1.61 -22.40 16 14 C 0.50 17.12 7.72 87.66 0.68 17.79 16 15 O -0.56 -25.34 14.12 15.74 0.22 -25.12 16 16 C 0.06 1.46 5.96 71.24 0.42 1.89 16 17 O -0.34 -10.33 9.77 -51.07 -0.50 -10.83 16 18 C 0.55 14.74 7.93 69.97 0.55 15.29 16 19 O -0.50 -13.62 16.66 19.42 0.32 -13.29 16 20 C -0.11 -2.57 7.18 24.04 0.17 -2.40 16 21 C -0.09 -1.48 10.62 22.40 0.24 -1.24 16 22 C -0.23 -2.41 10.87 22.07 0.24 -2.17 16 23 C 0.02 0.24 12.08 67.11 0.81 1.05 16 24 O -0.18 -3.93 10.67 -4.90 -0.05 -3.98 16 25 C -0.09 -4.20 9.90 22.13 0.22 -3.98 16 26 C -0.19 -9.81 8.74 22.48 0.20 -9.61 16 27 H 0.30 13.17 8.30 -92.70 -0.77 12.40 16 28 H 0.09 4.77 8.06 -2.92 -0.02 4.75 16 29 H 0.10 4.95 6.45 -2.91 -0.02 4.93 16 30 H 0.42 9.81 8.82 -92.71 -0.82 8.99 16 31 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.25 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.10 5.23 6.52 -2.91 -0.02 5.21 16 Total: -1.00 -75.49 338.80 5.68 -69.81 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.32 Total: 26.32 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.68 Total: -19.91 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.35 Total: -62.27 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.01 Total: -53.22 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.28 kcal Total: -75.49 5.68 -69.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007747749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.575 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds