Wall clock time and date at job start Tue Mar 31 2020 11:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48504 * 109.46985 * 240.00305 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47564 * 119.99994 * 3 2 1 7 7 C 1.38895 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00576 * 189.24630 * 7 2 1 9 9 N 1.37148 * 119.99574 * 9.24657 * 7 2 1 10 10 C 1.34770 * 119.99684 * 235.66975 * 9 7 2 11 11 O 1.21281 * 119.99587 * 185.67919 * 10 9 7 12 12 C 1.50699 * 120.00462 * 5.67552 * 10 9 7 13 13 O 1.45200 * 109.47426 * 174.94275 * 12 10 9 14 14 C 1.34761 * 117.00154 * 179.97438 * 13 12 10 15 15 O 1.21533 * 120.00419 * 359.97438 * 14 13 12 16 16 C 1.47231 * 120.00234 * 179.97438 * 14 13 12 17 17 C 1.47057 * 127.20566 * 179.97438 * 16 14 13 18 18 C 1.34162 * 105.95117 * 180.02562 * 17 16 14 19 19 O 1.34219 * 109.14574 * 0.02562 * 18 17 16 20 20 C 1.33630 * 110.92229 * 359.72283 * 19 18 17 21 21 C 1.39787 * 120.00010 * 55.66751 * 9 7 2 22 22 C 1.38961 * 120.07792 * 355.19137 * 21 9 7 23 23 C 1.38082 * 119.92435 * 179.97438 * 22 21 9 24 24 C 1.38311 * 120.07409 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.15721 * 0.02562 * 24 23 22 26 26 C 1.38085 * 120.08210 * 359.97438 * 25 24 23 27 27 H 0.97001 * 119.99606 * 4.98767 * 1 2 3 28 28 H 1.09000 * 109.46845 * 294.93904 * 12 10 9 29 29 H 1.08994 * 109.46934 * 54.94140 * 12 10 9 30 30 H 1.08001 * 127.02544 * 0.02562 * 17 16 14 31 31 H 1.07996 * 125.42403 * 179.97438 * 18 17 16 32 32 H 1.07998 * 125.80624 * 180.28180 * 20 19 18 33 33 H 1.08007 * 120.03887 * 359.70095 * 22 21 9 34 34 H 1.08001 * 119.96344 * 179.97438 * 23 22 21 35 35 H 1.07996 * 119.92050 * 179.97438 * 24 23 22 36 36 H 1.08006 * 119.96364 * 180.02562 * 25 24 23 37 37 H 1.07990 * 120.04576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6963 -1.2126 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0781 -1.2089 0.1508 9 7 1.3363 -2.3829 -0.1898 10 6 1.4382 -3.3709 0.7211 11 8 0.9287 -4.4501 0.5047 12 6 2.1852 -3.1350 2.0085 13 8 2.0518 -4.2992 2.8659 14 6 2.6664 -4.2501 4.0642 15 8 3.2969 -3.2615 4.3838 16 6 2.5739 -5.3941 4.9864 17 6 3.1777 -5.5105 6.3222 18 6 2.8258 -6.7209 6.7817 19 8 2.0743 -7.3408 5.8585 20 6 1.9060 -6.5670 4.7821 21 6 0.5453 -2.5608 -1.3285 22 6 0.3585 -1.5097 -2.2180 23 6 -0.4230 -1.6891 -3.3421 24 6 -1.0192 -2.9135 -3.5835 25 6 -0.8355 -3.9619 -2.7004 26 6 -0.0553 -3.7896 -1.5742 27 1 -0.4849 0.8369 -0.0730 28 1 3.2392 -2.9631 1.7906 29 1 1.7715 -2.2623 2.5138 30 1 3.7812 -4.7725 6.8297 31 1 3.1037 -7.1313 7.7412 32 1 1.3401 -6.8264 3.8996 33 1 0.8206 -0.5521 -2.0280 34 1 -0.5689 -0.8724 -4.0336 35 1 -1.6304 -3.0510 -4.4633 36 1 -1.3023 -4.9169 -2.8922 37 1 0.0874 -4.6085 -0.8849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016158367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:05 Heat of formation + Delta-G solvation = -45.492477 kcal Electronic energy + Delta-G solvation = -25291.719401 eV Core-core repulsion = 21388.472269 eV Total energy + Delta-G solvation = -3903.247132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.69342 -40.15439 -39.47747 -37.29922 -35.95468 -35.10931 -33.06056 -32.07573 -30.34368 -29.72971 -29.51612 -27.39536 -25.28527 -24.08295 -21.85623 -21.60484 -21.23355 -20.35046 -19.63781 -18.40001 -17.94728 -16.88242 -16.49969 -16.07426 -15.99769 -15.74695 -15.53781 -15.17328 -14.68354 -14.28663 -14.18833 -13.53113 -13.12562 -13.09414 -12.92001 -12.71219 -12.66457 -12.37756 -12.12763 -11.79372 -11.56054 -11.31427 -11.15417 -10.88127 -10.55925 -10.45439 -10.32429 -10.10392 -10.02274 -9.33482 -8.99234 -8.82482 -8.25652 -7.85201 -6.97681 -6.41575 -4.67263 1.16138 1.85642 2.32883 2.50883 2.58077 2.86724 3.02308 3.09687 3.10718 3.16191 3.59149 3.89962 4.34248 4.50727 4.65435 4.66640 5.04247 5.07724 5.35043 5.48837 5.56047 5.72728 5.81195 5.83019 5.91131 5.99408 6.07589 6.11943 6.63719 6.65024 6.68218 6.76634 6.82474 7.07064 7.15894 7.44478 7.54621 7.61084 7.68217 7.96701 7.97710 8.34121 8.73386 9.08173 9.45604 10.37538 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.003860 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.408223 B = 7252.588739 C = 8938.526947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.059 3.941 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.496 3.504 11 O -0.549 6.549 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.534 3.466 15 O -0.507 6.507 16 C -0.227 4.227 17 C -0.162 4.162 18 C -0.045 4.045 19 O -0.175 6.175 20 C 0.059 3.941 21 C 0.183 3.817 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.171 4.171 25 C -0.120 4.120 26 C -0.191 4.191 27 H 0.278 0.722 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.161 0.839 31 H 0.210 0.790 32 H 0.225 0.775 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -7.840 6.893 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.509 4.509 8 H 0.114 0.886 9 N -0.085 5.085 10 C 0.287 3.713 11 O -0.432 6.432 12 C -0.001 4.001 13 O -0.251 6.251 14 C 0.378 3.622 15 O -0.396 6.396 16 C -0.229 4.229 17 C -0.181 4.181 18 C -0.111 4.111 19 O -0.070 6.070 20 C -0.012 4.012 21 C 0.087 3.913 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.190 4.190 25 C -0.139 4.139 26 C -0.210 4.210 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.179 0.821 31 H 0.227 0.773 32 H 0.242 0.758 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.851 -8.178 7.053 11.170 hybrid contribution 0.396 1.624 -0.116 1.675 sum 3.247 -6.555 6.937 10.081 Atomic orbital electron populations 1.70017 1.06165 1.29129 1.41539 1.25633 0.95329 1.00337 0.93846 0.86172 0.79543 0.80500 0.79792 1.19154 1.20408 1.19004 1.19378 0.92429 0.82494 1.56597 0.88638 1.40768 1.39833 1.13477 1.14414 1.20216 0.81904 0.84814 0.84374 1.90210 1.49453 1.26163 1.77390 1.22591 1.02220 0.86002 0.89292 1.86494 1.68194 1.43675 1.26776 1.19967 0.76155 0.85788 0.80270 1.90848 1.39812 1.32964 1.75994 1.20622 1.09624 0.95716 0.96976 1.22754 1.03504 0.98288 0.93515 1.23915 0.98457 0.93474 0.95214 1.83833 1.56322 1.42971 1.23841 1.24913 0.97512 0.88704 0.90028 1.18233 0.93069 0.93257 0.86711 1.21030 0.99541 0.98828 0.92971 1.20780 0.99205 0.96666 0.97598 1.20815 1.03547 0.94366 1.00281 1.20874 0.99701 0.97923 0.95404 1.22785 0.99430 0.99213 0.99576 0.91193 0.88618 0.87600 0.82093 0.77344 0.75832 0.85008 0.87657 0.88075 0.87595 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.23 11.39 55.49 0.63 -20.60 16 2 C 0.06 1.41 3.49 -17.49 -0.06 1.35 16 3 Si 0.92 18.36 29.57 -169.99 -5.03 13.33 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.38 -9.19 7.61 -14.93 -0.11 -9.31 16 8 H 0.10 2.17 7.85 -52.49 -0.41 1.76 16 9 N -0.38 -9.28 2.62 -58.98 -0.15 -9.43 16 10 C 0.50 11.66 7.65 -10.99 -0.08 11.57 16 11 O -0.55 -13.38 12.90 -14.05 -0.18 -13.56 16 12 C 0.08 1.54 4.78 36.01 0.17 1.71 16 13 O -0.34 -6.39 9.61 -47.33 -0.45 -6.84 16 14 C 0.53 9.37 7.95 34.38 0.27 9.64 16 15 O -0.51 -10.00 16.77 -19.29 -0.32 -10.33 16 16 C -0.23 -3.17 6.31 -103.29 -0.65 -3.82 16 17 C -0.16 -1.82 11.01 -37.44 -0.41 -2.23 16 18 C -0.05 -0.39 12.03 29.30 0.35 -0.04 16 19 O -0.17 -1.79 10.52 7.70 0.08 -1.71 16 20 C 0.06 0.67 11.94 30.11 0.36 1.03 16 21 C 0.18 4.53 6.05 -83.70 -0.51 4.03 16 22 C -0.10 -2.42 7.87 -39.37 -0.31 -2.73 16 23 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 24 C -0.17 -3.32 10.04 -39.53 -0.40 -3.72 16 25 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 26 C -0.19 -4.44 9.06 -39.37 -0.36 -4.80 16 27 H 0.28 6.67 8.32 -40.82 -0.34 6.33 16 28 H 0.10 1.83 8.13 -51.93 -0.42 1.41 16 29 H 0.11 2.23 8.04 -51.93 -0.42 1.81 16 30 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.23 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.13 3.19 5.15 -52.48 -0.27 2.92 16 34 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.18 4.18 4.50 -56.38 -0.25 3.93 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -30.19 330.92 -6.42 -36.61 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.45 Total: 10.65 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.53 Total: -3.11 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.48 Total: -30.03 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.88 Total: -32.43 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.19 -6.42 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016158367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.885 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds