Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48504 * 109.46985 * 240.00305 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47564 * 119.99994 * 3 2 1 7 7 C 1.38895 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00576 * 189.24630 * 7 2 1 9 9 N 1.37148 * 119.99574 * 9.24657 * 7 2 1 10 10 C 1.34770 * 119.99684 * 235.66975 * 9 7 2 11 11 O 1.21281 * 119.99587 * 185.67919 * 10 9 7 12 12 C 1.50699 * 120.00462 * 5.67552 * 10 9 7 13 13 O 1.45200 * 109.47426 * 174.94275 * 12 10 9 14 14 C 1.34761 * 117.00154 * 179.97438 * 13 12 10 15 15 O 1.21533 * 120.00419 * 359.97438 * 14 13 12 16 16 C 1.47231 * 120.00234 * 179.97438 * 14 13 12 17 17 C 1.47057 * 127.20566 * 179.97438 * 16 14 13 18 18 C 1.34162 * 105.95117 * 180.02562 * 17 16 14 19 19 O 1.34219 * 109.14574 * 0.02562 * 18 17 16 20 20 C 1.33630 * 110.92229 * 359.72283 * 19 18 17 21 21 C 1.39787 * 120.00010 * 55.66751 * 9 7 2 22 22 C 1.38961 * 120.07792 * 355.19137 * 21 9 7 23 23 C 1.38082 * 119.92435 * 179.97438 * 22 21 9 24 24 C 1.38311 * 120.07409 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.15721 * 0.02562 * 24 23 22 26 26 C 1.38085 * 120.08210 * 359.97438 * 25 24 23 27 27 H 0.97001 * 119.99606 * 4.98767 * 1 2 3 28 28 H 1.09000 * 109.46845 * 294.93904 * 12 10 9 29 29 H 1.08994 * 109.46934 * 54.94140 * 12 10 9 30 30 H 1.08001 * 127.02544 * 0.02562 * 17 16 14 31 31 H 1.07996 * 125.42403 * 179.97438 * 18 17 16 32 32 H 1.07998 * 125.80624 * 180.28180 * 20 19 18 33 33 H 1.08007 * 120.03887 * 359.70095 * 22 21 9 34 34 H 1.08001 * 119.96344 * 179.97438 * 23 22 21 35 35 H 1.07996 * 119.92050 * 179.97438 * 24 23 22 36 36 H 1.08006 * 119.96364 * 180.02562 * 25 24 23 37 37 H 1.07990 * 120.04576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6963 -1.2126 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0781 -1.2089 0.1508 9 7 1.3363 -2.3829 -0.1898 10 6 1.4382 -3.3709 0.7211 11 8 0.9287 -4.4501 0.5047 12 6 2.1852 -3.1350 2.0085 13 8 2.0518 -4.2992 2.8659 14 6 2.6664 -4.2501 4.0642 15 8 3.2969 -3.2615 4.3838 16 6 2.5739 -5.3941 4.9864 17 6 3.1777 -5.5105 6.3222 18 6 2.8258 -6.7209 6.7817 19 8 2.0743 -7.3408 5.8585 20 6 1.9060 -6.5670 4.7821 21 6 0.5453 -2.5608 -1.3285 22 6 0.3585 -1.5097 -2.2180 23 6 -0.4230 -1.6891 -3.3421 24 6 -1.0192 -2.9135 -3.5835 25 6 -0.8355 -3.9619 -2.7004 26 6 -0.0553 -3.7896 -1.5742 27 1 -0.4849 0.8369 -0.0730 28 1 3.2392 -2.9631 1.7906 29 1 1.7715 -2.2623 2.5138 30 1 3.7812 -4.7725 6.8297 31 1 3.1037 -7.1313 7.7412 32 1 1.3401 -6.8264 3.8996 33 1 0.8206 -0.5521 -2.0280 34 1 -0.5689 -0.8724 -4.0336 35 1 -1.6304 -3.0510 -4.4633 36 1 -1.3023 -4.9169 -2.8922 37 1 0.0874 -4.6085 -0.8849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016158367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = -61.348184 kcal Electronic energy + Delta-G solvation = -25292.406956 eV Core-core repulsion = 21388.472269 eV Total energy + Delta-G solvation = -3903.934688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.56498 -41.79993 -41.06504 -38.99117 -37.47898 -36.90195 -34.01569 -33.91596 -31.64266 -31.33270 -30.87348 -29.00572 -27.11666 -25.32925 -23.51200 -22.91294 -22.42959 -21.56282 -21.42398 -19.78160 -19.37749 -18.28955 -17.91225 -17.74350 -17.36812 -17.07454 -16.98866 -16.70730 -16.12908 -15.93308 -15.50255 -15.02300 -14.78451 -14.56322 -14.34759 -14.05066 -13.96277 -13.81974 -13.55913 -13.41000 -13.25397 -13.04856 -12.83532 -12.48545 -12.17010 -11.92454 -11.89648 -11.75782 -11.10723 -10.98793 -10.60213 -10.05133 -9.83337 -9.54462 -8.77789 -8.21214 -6.55221 0.07236 0.61708 0.80476 1.03010 1.18592 1.41919 1.44146 1.53199 1.82827 1.94955 2.00784 2.22513 2.75787 2.85324 3.32094 3.52422 3.72749 3.79268 3.97708 4.12300 4.23064 4.32585 4.37078 4.46475 4.59654 4.72052 4.92303 4.94365 4.98398 5.10509 5.21623 5.28709 5.30055 5.40637 5.77324 5.85285 5.86929 5.91235 5.98274 6.17922 6.54126 6.59613 6.89543 7.26704 7.63238 8.56767 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.003860 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.408223 B = 7252.588739 C = 8938.526947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.027 3.973 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.396 4.396 8 H 0.101 0.899 9 N -0.387 5.387 10 C 0.484 3.516 11 O -0.566 6.566 12 C 0.087 3.913 13 O -0.342 6.342 14 C 0.533 3.467 15 O -0.537 6.537 16 C -0.265 4.265 17 C -0.188 4.188 18 C -0.015 4.015 19 O -0.170 6.170 20 C 0.076 3.924 21 C 0.149 3.851 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.161 4.161 25 C -0.119 4.119 26 C -0.213 4.213 27 H 0.278 0.722 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.259 0.741 32 H 0.240 0.760 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -8.694 6.807 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.119 0.881 9 N -0.096 5.096 10 C 0.275 3.725 11 O -0.450 6.450 12 C 0.010 3.990 13 O -0.257 6.257 14 C 0.380 3.620 15 O -0.429 6.429 16 C -0.268 4.268 17 C -0.207 4.207 18 C -0.079 4.079 19 O -0.064 6.064 20 C 0.005 3.995 21 C 0.054 3.946 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.180 4.180 25 C -0.137 4.137 26 C -0.233 4.233 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.183 0.817 31 H 0.275 0.725 32 H 0.256 0.744 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.613 -9.054 6.967 11.719 hybrid contribution 0.420 1.766 -0.094 1.818 sum 3.032 -7.288 6.872 10.466 Atomic orbital electron populations 1.70122 1.07648 1.29800 1.42700 1.26350 0.95825 1.02987 0.92865 0.85216 0.78296 0.76499 0.79942 1.18345 1.20276 1.18726 1.19681 0.92842 0.82875 1.56833 0.88110 1.40982 1.39980 1.13782 1.14876 1.20654 0.82085 0.84622 0.85104 1.90187 1.50265 1.26620 1.77946 1.22313 1.02112 0.86203 0.88327 1.86506 1.68799 1.42888 1.27532 1.20613 0.75085 0.86554 0.79775 1.90814 1.41298 1.34413 1.76362 1.20697 1.12584 0.95592 0.97928 1.22946 1.04975 1.00001 0.92767 1.24771 0.95550 0.91993 0.95633 1.83890 1.56224 1.42644 1.23686 1.25133 0.96093 0.87704 0.90549 1.18605 0.94243 0.94367 0.87405 1.21075 1.00984 0.98075 0.94283 1.21172 0.97933 0.98274 0.96895 1.21262 1.02560 0.93161 1.00970 1.21260 0.98483 0.99763 0.94201 1.22810 1.00927 0.98572 1.00970 0.91224 0.87703 0.88704 0.81667 0.72511 0.74431 0.86410 0.84742 0.83832 0.84402 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.21 11.39 21.65 0.25 -44.97 16 2 C 0.03 1.33 3.49 84.91 0.30 1.62 16 3 Si 0.98 38.00 29.57 68.60 2.03 40.03 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.40 -19.65 7.61 84.02 0.64 -19.01 16 8 H 0.10 4.73 7.85 -2.92 -0.02 4.71 16 9 N -0.39 -19.86 2.62 -458.90 -1.20 -21.06 16 10 C 0.48 23.81 7.65 87.66 0.67 24.48 16 11 O -0.57 -28.77 12.90 15.71 0.20 -28.56 16 12 C 0.09 3.74 4.78 71.24 0.34 4.08 16 13 O -0.34 -13.55 9.61 -50.35 -0.48 -14.04 16 14 C 0.53 19.42 7.95 70.19 0.56 19.97 16 15 O -0.54 -22.13 16.77 19.73 0.33 -21.80 16 16 C -0.27 -7.42 6.31 -19.00 -0.12 -7.54 16 17 C -0.19 -4.02 11.01 23.65 0.26 -3.76 16 18 C -0.01 -0.21 12.03 66.89 0.80 0.60 16 19 O -0.17 -3.04 10.52 4.63 0.05 -2.99 16 20 C 0.08 1.65 11.94 67.42 0.80 2.46 16 21 C 0.15 7.58 6.05 38.22 0.23 7.81 16 22 C -0.12 -5.85 7.87 22.41 0.18 -5.68 16 23 C -0.12 -4.90 10.04 22.25 0.22 -4.68 16 24 C -0.16 -5.77 10.04 22.30 0.22 -5.54 16 25 C -0.12 -4.62 10.04 22.25 0.22 -4.40 16 26 C -0.21 -10.07 9.06 22.41 0.20 -9.87 16 27 H 0.28 13.63 8.32 -92.71 -0.77 12.86 16 28 H 0.11 4.23 8.13 -2.39 -0.02 4.21 16 29 H 0.09 4.25 8.04 -2.39 -0.02 4.23 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.26 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.24 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.12 5.82 5.15 -2.91 -0.01 5.81 16 34 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.16 8.00 4.50 -64.45 -0.29 7.71 16 Total: -1.00 -68.03 330.92 7.55 -60.49 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.84 Total: 32.39 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.54 Total: 0.53 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.96 Total: -66.03 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: 0.10 Total: -67.39 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -68.03 7.55 -60.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016158367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds