Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86793 * 120.00364 * 2 1 4 4 H 1.48499 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47316 * 300.00131 * 3 2 1 6 6 H 1.48503 * 109.47374 * 59.99612 * 3 2 1 7 7 C 1.38756 * 119.99315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99372 * 179.97438 * 7 2 1 9 9 O 1.34920 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.34308 * 116.99866 * 179.97438 * 9 7 2 11 11 O 1.21213 * 120.00203 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99838 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.46927 * 300.00045 * 12 10 9 14 14 N 1.46506 * 109.46956 * 180.02562 * 12 10 9 15 15 C 1.34777 * 120.00033 * 155.00290 * 14 12 10 16 16 O 1.21697 * 119.99568 * 359.97438 * 15 14 12 17 17 C 1.46656 * 119.99986 * 179.97438 * 15 14 12 18 18 C 1.36540 * 125.98623 * 180.02562 * 17 15 14 19 19 C 1.40360 * 106.70773 * 179.97438 * 18 17 15 20 20 C 1.35134 * 107.11558 * 359.97438 * 19 18 17 21 21 O 1.33932 * 108.76540 * 359.77370 * 20 19 18 22 22 C 1.50703 * 109.47064 * 60.00277 * 12 10 9 23 23 C 1.38231 * 119.99850 * 79.72478 * 22 12 10 24 24 C 1.38234 * 119.99784 * 179.78676 * 23 22 12 25 25 C 1.38238 * 119.99871 * 0.44237 * 24 23 22 26 26 C 1.38233 * 120.00133 * 359.81196 * 25 24 23 27 27 C 1.38230 * 119.99625 * 259.99803 * 22 12 10 28 28 H 0.97001 * 119.99384 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99812 * 334.99451 * 14 12 10 30 30 H 1.07998 * 126.64976 * 359.92730 * 18 17 15 31 31 H 1.08006 * 126.44615 * 179.97438 * 19 18 17 32 32 H 1.08002 * 125.61420 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.00199 * 0.02562 * 23 22 12 34 34 H 1.08003 * 120.00226 * 180.27398 * 24 23 22 35 35 H 1.08001 * 119.99751 * 179.83432 * 25 24 23 36 36 H 1.08004 * 120.00235 * 179.97438 * 26 25 24 37 37 H 1.08004 * 120.00223 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7085 1.3462 -0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8898 2.3964 1.2125 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3334 -2.3701 0.0005 10 6 2.0649 -3.4966 0.0005 11 8 3.2753 -3.4332 0.0010 12 6 1.3806 -4.8393 0.0011 13 1 0.7581 -4.9294 0.8914 14 7 2.3896 -5.9015 0.0016 15 6 2.0866 -7.1185 0.4954 16 8 0.9751 -7.3347 0.9412 17 6 3.0965 -8.1820 0.4954 18 6 2.9228 -9.4532 0.9623 19 6 4.1394 -10.1250 0.7659 20 6 4.9915 -9.2456 0.1943 21 8 4.3577 -8.0775 0.0281 22 6 0.5191 -4.9646 -1.2290 23 6 1.0925 -5.2899 -2.4441 24 6 0.3017 -5.4092 -3.5716 25 6 -1.0612 -5.1941 -3.4858 26 6 -1.6338 -4.8637 -2.2718 27 6 -0.8435 -4.7487 -1.1434 28 1 -0.4849 0.8401 0.0004 29 1 3.2756 -5.7290 -0.3535 30 1 2.0237 -9.8624 1.3989 31 1 4.3543 -11.1517 1.0231 32 1 6.0138 -9.4520 -0.0862 33 1 2.1577 -5.4547 -2.5117 34 1 0.7489 -5.6677 -4.5200 35 1 -1.6787 -5.2847 -4.3673 36 1 -2.6985 -4.6953 -2.2049 37 1 -1.2909 -4.4906 -0.1949 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027492479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -85.006073 kcal Electronic energy + Delta-G solvation = -25524.531464 eV Core-core repulsion = 21619.570894 eV Total energy + Delta-G solvation = -3904.960571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68320 -41.80446 -40.48900 -39.77983 -37.60330 -36.02655 -34.38226 -34.07558 -32.84583 -31.82149 -30.82909 -28.85913 -27.17358 -24.48289 -23.54697 -23.29942 -22.73171 -21.78862 -21.32613 -20.03582 -19.93718 -18.57476 -17.93276 -17.57891 -17.34363 -17.28418 -16.85470 -16.42496 -16.17914 -15.95206 -15.68033 -15.53605 -15.03315 -14.32418 -14.30874 -14.15231 -13.99600 -13.91600 -13.70112 -13.57549 -13.47317 -13.13943 -12.46784 -12.29975 -12.19368 -12.04101 -11.99226 -11.66873 -11.39567 -11.06521 -10.74279 -10.61752 -9.84244 -9.74877 -9.68168 -8.58083 -6.38617 -0.03903 0.29975 0.48011 1.16883 1.28574 1.40153 1.42852 1.52175 1.54962 1.89495 1.99838 2.17095 2.55502 2.92747 3.01524 3.51300 3.64507 3.80886 3.94485 4.05211 4.09359 4.18073 4.25270 4.42576 4.58642 4.59101 4.64557 4.88252 4.90594 4.93919 4.97446 5.10326 5.12330 5.38951 5.49546 5.55801 5.58138 5.75014 5.79908 6.06292 6.23255 6.46578 6.77350 6.85765 7.61833 8.61663 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.004198 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.517729 B = 6667.747573 C = 8030.749805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.001 3.999 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.423 4.423 8 H 0.086 0.914 9 O -0.223 6.223 10 C 0.398 3.602 11 O -0.567 6.567 12 C 0.218 3.782 13 H 0.116 0.884 14 N -0.693 5.693 15 C 0.607 3.393 16 O -0.549 6.549 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.230 4.230 20 C 0.012 3.988 21 O -0.177 6.177 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.106 4.106 28 H 0.280 0.720 29 H 0.416 0.584 30 H 0.164 0.836 31 H 0.190 0.810 32 H 0.256 0.744 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -17.262 -4.665 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.103 0.897 9 O -0.129 6.129 10 C 0.245 3.755 11 O -0.465 6.465 12 C 0.111 3.889 13 H 0.134 0.866 14 N -0.345 5.345 15 C 0.396 3.604 16 O -0.429 6.429 17 C -0.164 4.164 18 C -0.135 4.135 19 C -0.248 4.248 20 C -0.057 4.057 21 O -0.072 6.072 22 C -0.111 4.111 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.090 0.910 29 H 0.254 0.746 30 H 0.182 0.818 31 H 0.208 0.792 32 H 0.272 0.728 33 H 0.136 0.864 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.973 -16.924 -4.470 17.950 hybrid contribution 0.692 0.833 0.325 1.131 sum 4.665 -16.091 -4.144 17.259 Atomic orbital electron populations 1.70094 1.07625 1.29478 1.45720 1.26554 0.96892 1.02222 0.94373 0.84569 0.77869 0.74619 0.79305 1.18713 1.18351 1.18384 1.21539 0.92329 0.80698 1.55300 0.89676 1.83881 1.39791 1.13739 1.75473 1.23501 0.86475 0.87672 0.77833 1.90519 1.16094 1.87997 1.51938 1.18755 0.88619 0.82008 0.99543 0.86621 1.45544 1.16408 1.09853 1.62720 1.16809 0.85886 0.80707 0.76978 1.90848 1.21877 1.81532 1.48608 1.21554 0.85135 0.97219 1.12469 1.22277 1.01098 0.91291 0.98788 1.22246 0.92289 1.03379 1.06928 1.25484 1.00328 0.81174 0.98749 1.84102 1.22093 1.37162 1.63877 1.19737 0.94391 1.03047 0.93959 1.21062 1.00160 0.99906 0.92495 1.21427 0.94362 1.00082 0.98398 1.21579 0.95215 0.97967 0.98327 1.21439 1.00992 0.99356 0.92356 1.21157 0.92799 0.98280 1.00257 0.91033 0.74574 0.81850 0.79232 0.72791 0.86406 0.83044 0.82443 0.83425 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.32 13.67 21.63 0.30 -52.03 16 2 C 0.00 0.06 5.49 84.87 0.47 0.53 16 3 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.42 -25.62 9.65 67.94 0.66 -24.96 16 8 H 0.09 5.20 6.86 -2.91 -0.02 5.18 16 9 O -0.22 -13.22 9.66 14.90 0.14 -13.08 16 10 C 0.40 20.63 7.25 71.24 0.52 21.14 16 11 O -0.57 -30.67 15.07 20.77 0.31 -30.36 16 12 C 0.22 9.23 2.68 43.50 0.12 9.35 16 13 H 0.12 5.00 7.44 -2.39 -0.02 4.98 16 14 N -0.69 -25.63 4.20 -453.67 -1.91 -27.54 16 15 C 0.61 21.46 7.74 86.44 0.67 22.13 16 16 O -0.55 -21.97 16.53 -4.34 -0.07 -22.05 16 17 C -0.11 -3.20 7.13 24.07 0.17 -3.03 16 18 C -0.11 -2.62 10.62 22.39 0.24 -2.38 16 19 C -0.23 -3.53 10.87 22.07 0.24 -3.29 16 20 C 0.01 0.18 12.08 67.10 0.81 0.99 16 21 O -0.18 -4.28 10.40 -5.04 -0.05 -4.34 16 22 C -0.11 -4.36 4.84 -19.87 -0.10 -4.46 16 23 C -0.12 -4.15 9.32 22.27 0.21 -3.94 16 24 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 25 C -0.11 -3.06 10.05 22.27 0.22 -2.83 16 26 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 27 C -0.11 -4.01 9.67 22.27 0.22 -3.80 16 28 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.42 14.91 7.55 -92.71 -0.70 14.21 16 30 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.26 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.12 3.96 7.73 -2.91 -0.02 3.94 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.12 4.50 8.04 -2.91 -0.02 4.48 16 Total: -1.00 -78.43 342.14 6.06 -72.37 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.43 Total: 33.46 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.88 Total: -1.53 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.61 Total: -79.57 kcal Atomic # 8 Polarization: -70.15 SS G_CDS: 0.33 Total: -69.81 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.43 6.06 -72.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027492479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.634 kcal (2) G-P(sol) polarization free energy of solvation -78.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds