Wall clock time and date at job start Tue Mar 31 2020 10:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00279 * 2 1 4 4 C 1.50699 * 109.47382 * 270.00204 * 3 2 1 5 5 H 1.08005 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00335 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99892 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99950 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47062 * 120.00457 * 8 6 4 11 11 H 1.48503 * 109.46734 * 240.00160 * 8 6 4 12 12 C 1.34782 * 119.99678 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99622 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00118 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46890 * 180.02562 * 14 12 2 16 16 O 1.42901 * 109.46872 * 180.02562 * 15 14 12 17 17 C 1.35971 * 116.99902 * 179.97438 * 16 15 14 18 18 C 1.38689 * 120.03590 * 0.25602 * 17 16 15 19 19 C 1.38154 * 119.98291 * 180.25501 * 18 17 16 20 20 C 1.38476 * 120.05078 * 359.48616 * 19 18 17 21 21 F 1.35102 * 119.96302 * 180.27955 * 20 19 18 22 22 C 1.38432 * 120.06454 * 0.25792 * 20 19 18 23 23 C 1.38255 * 120.02356 * 0.02562 * 22 20 19 24 24 Cl 1.73595 * 120.02946 * 180.02562 * 23 22 20 25 25 H 1.09003 * 109.46764 * 270.00038 * 1 2 3 26 26 H 1.08997 * 109.47154 * 29.99494 * 1 2 3 27 27 H 1.08999 * 109.47176 * 150.00150 * 1 2 3 28 28 H 1.08998 * 109.46785 * 29.99946 * 3 2 1 29 29 H 1.08994 * 109.47460 * 150.00219 * 3 2 1 30 30 H 0.96998 * 119.99885 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47329 * 60.00374 * 14 12 2 32 32 H 1.08995 * 109.47062 * 299.99785 * 14 12 2 33 33 H 1.08996 * 109.47538 * 60.00006 * 15 14 12 34 34 H 1.09009 * 109.47049 * 299.99804 * 15 14 12 35 35 H 1.07997 * 120.00714 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.97709 * 179.77131 * 19 18 17 37 37 H 1.08004 * 119.98567 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4367 3.4175 -3.4339 9 1 2.8587 2.4176 -4.3673 10 1 2.7988 4.7382 -3.6669 11 1 4.8992 3.5262 -3.6676 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 8 1.6650 -4.8728 -0.0011 17 6 2.4055 -6.0131 -0.0017 18 6 3.7905 -5.9414 0.0036 19 6 4.5419 -7.1008 -0.0024 20 6 3.9132 -8.3346 -0.0029 21 9 4.6497 -9.4672 -0.0031 22 6 2.5308 -8.4086 -0.0029 23 6 1.7761 -7.2502 -0.0029 24 17 0.0426 -7.3428 -0.0021 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1384 0.5138 30 1 4.0303 4.4439 -0.8504 31 1 0.7583 -2.5299 -0.8903 32 1 0.7590 -2.5302 0.8897 33 1 3.0062 -3.5776 0.8894 34 1 3.0062 -3.5775 -0.8906 35 1 4.2816 -4.9796 0.0078 36 1 5.6205 -7.0448 -0.0020 37 1 2.0418 -9.3715 -0.0037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037869168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:04 Heat of formation + Delta-G solvation = -119.585626 kcal Electronic energy + Delta-G solvation = -22851.973390 eV Core-core repulsion = 18955.453278 eV Total energy + Delta-G solvation = -3896.520113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.93592 -41.38908 -40.58489 -38.53365 -37.42111 -36.63399 -34.77152 -33.18463 -32.13642 -30.45124 -29.59462 -27.37624 -26.21775 -24.60533 -23.76427 -22.90882 -20.13348 -19.47739 -18.71890 -18.62658 -18.00973 -17.51506 -17.49607 -17.03702 -16.67817 -16.24123 -16.05171 -15.87249 -15.59303 -15.02057 -14.70310 -14.55612 -14.26942 -14.08137 -13.82971 -13.72401 -13.44909 -13.19498 -13.17581 -12.82883 -12.75805 -12.50159 -12.34773 -12.21432 -12.11957 -11.94874 -11.74993 -11.66789 -10.70184 -10.65253 -10.15795 -9.44052 -9.23110 -8.23069 -6.37736 -0.14884 -0.02423 0.99609 1.37182 1.39060 1.50760 1.70191 1.78746 2.28783 2.36054 2.59243 3.07002 3.17448 3.51985 3.60076 3.77488 3.91185 3.93232 3.95266 4.17296 4.34987 4.44773 4.51835 4.68754 4.73775 4.76467 4.78545 4.96135 4.96450 4.98676 5.03936 5.23249 5.48533 5.55262 5.81881 6.05147 6.08267 6.68003 6.76194 7.26625 7.42764 8.84234 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002586 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.116411 B =10823.919347 C =11602.583479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.501 3.499 13 O -0.596 6.596 14 C -0.122 4.122 15 C 0.078 3.922 16 O -0.304 6.304 17 C 0.124 3.876 18 C -0.173 4.173 19 C -0.101 4.101 20 C 0.063 3.937 21 F -0.138 7.138 22 C -0.104 4.104 23 C -0.056 4.056 24 Cl -0.044 7.044 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.024 0.976 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -23.636 2.002 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.478 6.478 14 C -0.161 4.161 15 C 0.003 3.997 16 O -0.218 6.218 17 C 0.077 3.923 18 C -0.192 4.192 19 C -0.120 4.120 20 C 0.044 3.956 21 F -0.116 7.116 22 C -0.123 4.123 23 C -0.083 4.083 24 Cl -0.015 7.015 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.042 0.958 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.199 -23.456 2.053 24.348 hybrid contribution 0.644 0.706 -0.667 1.166 sum -5.554 -22.750 1.387 23.459 Atomic orbital electron populations 1.21991 0.77662 1.04216 1.02820 1.48150 1.08562 1.06314 1.70866 1.18791 0.91231 0.80327 0.96072 1.21737 1.36716 1.06505 0.93072 0.92738 1.25856 0.94962 0.96470 1.01899 1.70053 1.38987 1.14853 1.32976 0.85371 0.77869 0.78393 0.79198 1.19035 1.19565 1.20765 1.20897 0.87623 0.86275 0.76210 1.90654 1.16306 1.88179 1.52645 1.21398 0.98797 0.88201 1.07733 1.22455 0.94199 0.80066 1.02965 1.86050 1.35317 1.12412 1.87980 1.18870 0.90418 0.85962 0.97056 1.21338 0.91551 1.00802 1.05478 1.21305 1.02531 0.89785 0.98336 1.17406 0.88749 0.82487 1.07001 1.91515 1.76725 1.49089 1.94320 1.20971 0.91825 0.98872 1.00616 1.19914 0.86349 0.91420 1.10644 1.98382 1.07661 1.98510 1.96956 0.90898 0.91569 0.88513 0.95753 0.98113 0.92397 0.85954 0.85433 0.90923 0.91401 0.82757 0.81786 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.24 127.77 1.31 3.38 16 2 N -0.61 -24.44 2.86 -851.16 -2.43 -26.87 16 3 C 0.26 13.52 5.16 85.63 0.44 13.96 16 4 C -0.54 -30.59 9.39 25.60 0.24 -30.35 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 8 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 C 0.50 19.17 7.67 87.65 0.67 19.84 16 13 O -0.60 -28.61 15.56 -3.03 -0.05 -28.65 16 14 C -0.12 -3.01 4.62 29.85 0.14 -2.87 16 15 C 0.08 1.91 4.03 71.98 0.29 2.20 16 16 O -0.30 -6.94 9.60 -93.22 -0.89 -7.84 16 17 C 0.12 2.65 6.68 22.51 0.15 2.80 16 18 C -0.17 -3.32 9.04 22.36 0.20 -3.12 16 19 C -0.10 -1.68 10.02 22.31 0.22 -1.46 16 20 C 0.06 1.10 7.30 22.37 0.16 1.26 16 21 F -0.14 -2.50 17.27 44.97 0.78 -1.73 16 22 C -0.10 -1.72 9.80 22.32 0.22 -1.50 16 23 C -0.06 -1.09 6.33 22.41 0.14 -0.94 16 24 Cl -0.04 -0.83 28.50 -2.72 -0.08 -0.91 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 27 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 28 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 29 H 0.00 0.04 7.42 -2.39 -0.02 0.03 16 30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.12 2.54 7.40 -2.38 -0.02 2.53 16 32 H 0.13 2.47 8.11 -2.39 -0.02 2.45 16 33 H 0.07 1.80 7.61 -2.39 -0.02 1.78 16 34 H 0.07 1.77 7.63 -2.38 -0.02 1.75 16 35 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 36 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -71.06 341.09 5.39 -65.68 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.10 Total: 5.24 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 4.65 Total: 4.07 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.15 Total: -82.09 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.94 Total: -36.49 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -71.06 5.39 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037869168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.910 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds