Wall clock time and date at job start Tue Mar 31 2020 11:12:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86797 * 120.00008 * 2 1
4 4 H 1.48496 * 109.47381 * 270.00193 * 3 2 1
5 5 H 1.48506 * 109.46903 * 29.99997 * 3 2 1
6 6 H 1.48500 * 109.47183 * 149.99777 * 3 2 1
7 7 C 1.38722 * 120.00218 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99910 * 0.02562 * 7 2 1
9 9 O 1.34779 * 120.00172 * 180.02562 * 7 2 1
10 10 C 1.35568 * 117.00219 * 185.05948 * 9 7 2
11 11 C 1.39182 * 119.89533 * 354.43681 * 10 9 7
12 12 C 1.37597 * 120.10036 * 179.97438 * 11 10 9
13 13 C 1.40030 * 119.89538 * 0.02562 * 12 11 10
14 14 C 1.46966 * 120.09793 * 179.97438 * 13 12 11
15 15 C 1.35015 * 119.99858 * 179.97438 * 14 13 12
16 16 C 1.46258 * 120.00181 * 179.72325 * 15 14 13
17 17 O 1.21726 * 119.99609 * 0.02562 * 16 15 14
18 18 N 1.34775 * 120.00318 * 180.02562 * 16 15 14
19 19 C 1.46495 * 120.00070 * 180.02562 * 18 16 15
20 20 C 1.52998 * 109.47362 * 180.02562 * 19 18 16
21 21 F 1.39898 * 109.47313 * 59.99363 * 20 19 18
22 22 F 1.39896 * 109.47460 * 179.97438 * 20 19 18
23 23 F 1.39898 * 109.46641 * 299.99577 * 20 19 18
24 24 C 1.40020 * 119.80047 * 0.25502 * 13 12 11
25 25 C 1.37601 * 119.89636 * 359.49193 * 24 13 12
26 26 H 0.96997 * 120.00280 * 359.97438 * 1 2 3
27 27 H 1.07995 * 119.94846 * 359.96514 * 11 10 9
28 28 H 1.08001 * 120.05127 * 180.02562 * 12 11 10
29 29 H 1.07999 * 119.99554 * 0.02562 * 14 13 12
30 30 H 1.08007 * 120.00316 * 0.02562 * 15 14 13
31 31 H 0.97004 * 119.99859 * 0.02562 * 18 16 15
32 32 H 1.09010 * 109.46721 * 299.99863 * 19 18 16
33 33 H 1.08994 * 109.47290 * 59.99407 * 19 18 16
34 34 H 1.08002 * 120.04939 * 179.73839 * 24 13 12
35 35 H 1.08000 * 119.94690 * 180.23542 * 25 24 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4464 2.6526 0.7001
6 1 3.5466 1.4402 0.7001
7 6 2.0087 -1.2013 0.0005
8 1 1.4687 -2.1367 0.0005
9 8 3.3565 -1.2013 0.0011
10 6 3.9721 -2.4045 -0.1050
11 6 3.2170 -3.5737 -0.0911
12 6 3.8374 -4.7971 -0.1989
13 6 5.2306 -4.8647 -0.3223
14 6 5.8979 -6.1691 -0.4372
15 6 7.2413 -6.2320 -0.5565
16 6 7.9059 -7.5303 -0.6648
17 8 7.2478 -8.5542 -0.6478
18 7 9.2470 -7.5931 -0.7834
19 6 9.9126 -8.8935 -0.8924
20 6 11.4233 -8.6846 -1.0144
21 9 11.8943 -8.0132 0.1190
22 9 12.0590 -9.9265 -1.1179
23 9 11.6981 -7.9231 -2.1553
24 6 5.9866 -3.6861 -0.3298
25 6 5.3571 -2.4669 -0.2267
26 1 -0.4850 0.8400 0.0004
27 1 2.1426 -3.5205 0.0047
28 1 3.2507 -5.7038 -0.1885
29 1 5.3135 -7.0773 -0.4270
30 1 7.8256 -5.3237 -0.5671
31 1 9.7714 -6.7772 -0.7966
32 1 9.6988 -9.4868 -0.0032
33 1 9.5453 -9.4168 -1.7752
34 1 7.0617 -3.7338 -0.4205
35 1 5.9390 -1.5572 -0.2363
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000044565212.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:35
Heat of formation + Delta-G solvation = -196.366202 kcal
Electronic energy + Delta-G solvation = -24065.377554 eV
Core-core repulsion = 19613.731305 eV
Total energy + Delta-G solvation = -4451.646248 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 2.14 seconds
Orbital eigenvalues (eV)
-51.20474 -48.71960 -48.68358 -41.02712 -40.69575 -38.61393 -36.17875 -34.77380
-34.20485 -32.00136 -30.99770 -29.46093 -27.42298 -25.13246 -23.92726 -23.68065
-22.19559 -20.88712 -19.87689 -19.66613 -19.50299 -19.18020 -18.79395 -17.91612
-16.87603 -16.54976 -16.37663 -16.26933 -15.79380 -15.63997 -15.54334 -15.52763
-15.38597 -15.10902 -14.87208 -14.82798 -14.76235 -14.37738 -14.25190 -14.17649
-14.05760 -13.37744 -13.20014 -12.98352 -12.72711 -12.62772 -12.35760 -11.93868
-11.30217 -11.17813 -11.16105 -10.69711 -10.40094 -9.90749 -8.74697 -8.53524
-6.25239 -0.30245 0.56293 1.07899 1.32983 1.37435 1.44650 1.52578
1.92349 2.26306 2.27706 2.63812 2.80189 2.95659 3.01140 3.15788
3.17401 3.71844 3.93487 4.05715 4.13084 4.21153 4.33247 4.36975
4.47247 4.63778 4.84671 5.03369 5.11196 5.20740 5.29715 5.37892
5.58100 5.71194 5.80172 5.84105 6.15178 6.32270 6.79678 7.07922
7.51135 8.57222
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.034766 B = 0.001983 C = 0.001900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 805.193082 B =14113.547171 C =14734.111807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.011 3.989
3 Si 0.972 3.028
4 H -0.265 1.265
5 H -0.269 1.269
6 H -0.259 1.259
7 C -0.403 4.403
8 H 0.084 0.916
9 O -0.234 6.234
10 C 0.136 3.864
11 C -0.245 4.245
12 C -0.044 4.044
13 C -0.162 4.162
14 C 0.019 3.981
15 C -0.242 4.242
16 C 0.562 3.438
17 O -0.582 6.582
18 N -0.719 5.719
19 C 0.080 3.920
20 C 0.458 3.542
21 F -0.181 7.181
22 F -0.177 7.177
23 F -0.181 7.181
24 C -0.038 4.038
25 C -0.195 4.195
26 H 0.286 0.714
27 H 0.113 0.887
28 H 0.140 0.860
29 H 0.126 0.874
30 H 0.158 0.842
31 H 0.421 0.579
32 H 0.121 0.879
33 H 0.121 0.879
34 H 0.168 0.832
35 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.940 -14.965 -2.053 28.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.188 4.188
3 Si 0.793 3.207
4 H -0.190 1.190
5 H -0.193 1.193
6 H -0.183 1.183
7 C -0.479 4.479
8 H 0.102 0.898
9 O -0.140 6.140
10 C 0.086 3.914
11 C -0.264 4.264
12 C -0.062 4.062
13 C -0.163 4.163
14 C -0.001 4.001
15 C -0.262 4.262
16 C 0.354 3.646
17 O -0.463 6.463
18 N -0.373 5.373
19 C -0.046 4.046
20 C 0.403 3.597
21 F -0.163 7.163
22 F -0.158 7.158
23 F -0.163 7.163
24 C -0.056 4.056
25 C -0.214 4.214
26 H 0.096 0.904
27 H 0.131 0.869
28 H 0.158 0.842
29 H 0.144 0.856
30 H 0.175 0.825
31 H 0.258 0.742
32 H 0.139 0.861
33 H 0.139 0.861
34 H 0.185 0.815
35 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 23.427 -15.336 -2.022 28.073
hybrid contribution -0.155 0.943 0.019 0.955
sum 23.271 -14.393 -2.002 27.436
Atomic orbital electron populations
1.69701 1.07030 1.29849 1.49075 1.25339 0.95894 1.02344 0.95240
0.85202 0.78902 0.77183 0.79373 1.18981 1.19344 1.18341 1.20755
0.77936 0.96283 1.52930 0.89805 1.83460 1.21435 1.27628 1.81446
1.19963 0.93397 0.84949 0.93107 1.21233 1.00542 0.93009 1.11626
1.21306 0.94282 0.96618 0.93991 1.18819 0.92801 0.93283 1.11403
1.22193 0.94673 0.95296 0.87953 1.22682 0.95396 0.96495 1.11652
1.18429 0.81375 0.89904 0.74844 1.90828 1.65469 1.37800 1.52248
1.45427 1.07178 1.08763 1.75981 1.22487 0.84852 0.88773 1.08483
1.20455 0.91469 0.74063 0.73718 1.93233 1.90581 1.80822 1.51641
1.93226 1.84203 1.42524 1.95861 1.93234 1.95153 1.76392 1.51497
1.21377 1.00772 0.89524 0.93927 1.20506 0.90296 1.00092 1.10538
0.90393 0.86942 0.84219 0.85615 0.82450 0.74151 0.86137 0.86136
0.81465 0.84402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.16 13.96 21.62 0.30 -52.85 16
2 C 0.01 0.63 5.49 84.86 0.47 1.10 16
3 Si 0.97 43.45 28.62 68.60 1.96 45.42 16
4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16
5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16
6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16
7 C -0.40 -22.78 9.94 67.94 0.68 -22.11 16
8 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16
9 O -0.23 -11.98 8.57 -20.22 -0.17 -12.16 16
10 C 0.14 5.93 6.66 22.72 0.15 6.08 16
11 C -0.24 -10.11 9.14 22.35 0.20 -9.91 16
12 C -0.04 -1.43 9.78 22.55 0.22 -1.20 16
13 C -0.16 -4.47 5.87 -20.12 -0.12 -4.59 16
14 C 0.02 0.42 9.45 23.82 0.23 0.65 16
15 C -0.24 -4.34 9.41 23.61 0.22 -4.12 16
16 C 0.56 10.84 7.74 86.33 0.67 11.51 16
17 O -0.58 -15.67 16.23 -4.43 -0.07 -15.74 16
18 N -0.72 -8.89 5.41 -467.50 -2.53 -11.41 16
19 C 0.08 0.82 5.64 86.38 0.49 1.31 16
20 C 0.46 4.75 3.11 71.98 0.22 4.97 16
21 F -0.18 -2.17 17.18 44.97 0.77 -1.40 16
22 F -0.18 -2.11 17.32 44.97 0.78 -1.34 16
23 F -0.18 -2.17 17.18 44.97 0.77 -1.40 16
24 C -0.04 -1.00 9.40 22.55 0.21 -0.79 16
25 C -0.20 -6.60 9.97 22.34 0.22 -6.38 16
26 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16
27 H 0.11 5.15 5.62 -2.91 -0.02 5.13 16
28 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16
29 H 0.13 2.96 7.52 -2.91 -0.02 2.93 16
30 H 0.16 1.87 6.07 -2.91 -0.02 1.85 16
31 H 0.42 3.27 8.34 -92.71 -0.77 2.50 16
32 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16
33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.17 2.79 6.16 -2.91 -0.02 2.77 16
35 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16
Total: -1.00 -67.68 327.22 6.08 -61.61
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: 0.40 Total: 12.74 kcal
Atomic # 6 Polarization: -27.33 SS G_CDS: 3.86 Total: -23.47 kcal
Atomic # 7 Polarization: -62.04 SS G_CDS: -2.23 Total: -64.27 kcal
Atomic # 8 Polarization: -27.65 SS G_CDS: -0.25 Total: -27.90 kcal
Atomic # 9 Polarization: -6.45 SS G_CDS: 2.32 Total: -4.13 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 1.96 Total: 45.42 kcal
Total: -67.68 6.08 -61.61 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044565212.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -134.758 kcal
(2) G-P(sol) polarization free energy of solvation -67.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) -196.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.14 seconds