Wall clock time and date at job start Tue Mar 31 2020 11:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00008 * 2 1 4 4 H 1.48496 * 109.47381 * 270.00193 * 3 2 1 5 5 H 1.48506 * 109.46903 * 29.99997 * 3 2 1 6 6 H 1.48500 * 109.47183 * 149.99777 * 3 2 1 7 7 C 1.38722 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99910 * 0.02562 * 7 2 1 9 9 O 1.34779 * 120.00172 * 180.02562 * 7 2 1 10 10 C 1.35568 * 117.00219 * 185.05948 * 9 7 2 11 11 C 1.39182 * 119.89533 * 354.43681 * 10 9 7 12 12 C 1.37597 * 120.10036 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.89538 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.09793 * 179.97438 * 13 12 11 15 15 C 1.35015 * 119.99858 * 179.97438 * 14 13 12 16 16 C 1.46258 * 120.00181 * 179.72325 * 15 14 13 17 17 O 1.21726 * 119.99609 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00318 * 180.02562 * 16 15 14 19 19 C 1.46495 * 120.00070 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47362 * 180.02562 * 19 18 16 21 21 F 1.39898 * 109.47313 * 59.99363 * 20 19 18 22 22 F 1.39896 * 109.47460 * 179.97438 * 20 19 18 23 23 F 1.39898 * 109.46641 * 299.99577 * 20 19 18 24 24 C 1.40020 * 119.80047 * 0.25502 * 13 12 11 25 25 C 1.37601 * 119.89636 * 359.49193 * 24 13 12 26 26 H 0.96997 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.94846 * 359.96514 * 11 10 9 28 28 H 1.08001 * 120.05127 * 180.02562 * 12 11 10 29 29 H 1.07999 * 119.99554 * 0.02562 * 14 13 12 30 30 H 1.08007 * 120.00316 * 0.02562 * 15 14 13 31 31 H 0.97004 * 119.99859 * 0.02562 * 18 16 15 32 32 H 1.09010 * 109.46721 * 299.99863 * 19 18 16 33 33 H 1.08994 * 109.47290 * 59.99407 * 19 18 16 34 34 H 1.08002 * 120.04939 * 179.73839 * 24 13 12 35 35 H 1.08000 * 119.94690 * 180.23542 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 1.4687 -2.1367 0.0005 9 8 3.3565 -1.2013 0.0011 10 6 3.9721 -2.4045 -0.1050 11 6 3.2170 -3.5737 -0.0911 12 6 3.8374 -4.7971 -0.1989 13 6 5.2306 -4.8647 -0.3223 14 6 5.8979 -6.1691 -0.4372 15 6 7.2413 -6.2320 -0.5565 16 6 7.9059 -7.5303 -0.6648 17 8 7.2478 -8.5542 -0.6478 18 7 9.2470 -7.5931 -0.7834 19 6 9.9126 -8.8935 -0.8924 20 6 11.4233 -8.6846 -1.0144 21 9 11.8943 -8.0132 0.1190 22 9 12.0590 -9.9265 -1.1179 23 9 11.6981 -7.9231 -2.1553 24 6 5.9866 -3.6861 -0.3298 25 6 5.3571 -2.4669 -0.2267 26 1 -0.4850 0.8400 0.0004 27 1 2.1426 -3.5205 0.0047 28 1 3.2507 -5.7038 -0.1885 29 1 5.3135 -7.0773 -0.4270 30 1 7.8256 -5.3237 -0.5671 31 1 9.7714 -6.7772 -0.7966 32 1 9.6988 -9.4868 -0.0032 33 1 9.5453 -9.4168 -1.7752 34 1 7.0617 -3.7338 -0.4205 35 1 5.9390 -1.5572 -0.2363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044565212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:35 Heat of formation + Delta-G solvation = -196.366202 kcal Electronic energy + Delta-G solvation = -24065.377554 eV Core-core repulsion = 19613.731305 eV Total energy + Delta-G solvation = -4451.646248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -51.20474 -48.71960 -48.68358 -41.02712 -40.69575 -38.61393 -36.17875 -34.77380 -34.20485 -32.00136 -30.99770 -29.46093 -27.42298 -25.13246 -23.92726 -23.68065 -22.19559 -20.88712 -19.87689 -19.66613 -19.50299 -19.18020 -18.79395 -17.91612 -16.87603 -16.54976 -16.37663 -16.26933 -15.79380 -15.63997 -15.54334 -15.52763 -15.38597 -15.10902 -14.87208 -14.82798 -14.76235 -14.37738 -14.25190 -14.17649 -14.05760 -13.37744 -13.20014 -12.98352 -12.72711 -12.62772 -12.35760 -11.93868 -11.30217 -11.17813 -11.16105 -10.69711 -10.40094 -9.90749 -8.74697 -8.53524 -6.25239 -0.30245 0.56293 1.07899 1.32983 1.37435 1.44650 1.52578 1.92349 2.26306 2.27706 2.63812 2.80189 2.95659 3.01140 3.15788 3.17401 3.71844 3.93487 4.05715 4.13084 4.21153 4.33247 4.36975 4.47247 4.63778 4.84671 5.03369 5.11196 5.20740 5.29715 5.37892 5.58100 5.71194 5.80172 5.84105 6.15178 6.32270 6.79678 7.07922 7.51135 8.57222 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.001983 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.193082 B =14113.547171 C =14734.111807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.403 4.403 8 H 0.084 0.916 9 O -0.234 6.234 10 C 0.136 3.864 11 C -0.245 4.245 12 C -0.044 4.044 13 C -0.162 4.162 14 C 0.019 3.981 15 C -0.242 4.242 16 C 0.562 3.438 17 O -0.582 6.582 18 N -0.719 5.719 19 C 0.080 3.920 20 C 0.458 3.542 21 F -0.181 7.181 22 F -0.177 7.177 23 F -0.181 7.181 24 C -0.038 4.038 25 C -0.195 4.195 26 H 0.286 0.714 27 H 0.113 0.887 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.158 0.842 31 H 0.421 0.579 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.940 -14.965 -2.053 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.102 0.898 9 O -0.140 6.140 10 C 0.086 3.914 11 C -0.264 4.264 12 C -0.062 4.062 13 C -0.163 4.163 14 C -0.001 4.001 15 C -0.262 4.262 16 C 0.354 3.646 17 O -0.463 6.463 18 N -0.373 5.373 19 C -0.046 4.046 20 C 0.403 3.597 21 F -0.163 7.163 22 F -0.158 7.158 23 F -0.163 7.163 24 C -0.056 4.056 25 C -0.214 4.214 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.175 0.825 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.185 0.815 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 23.427 -15.336 -2.022 28.073 hybrid contribution -0.155 0.943 0.019 0.955 sum 23.271 -14.393 -2.002 27.436 Atomic orbital electron populations 1.69701 1.07030 1.29849 1.49075 1.25339 0.95894 1.02344 0.95240 0.85202 0.78902 0.77183 0.79373 1.18981 1.19344 1.18341 1.20755 0.77936 0.96283 1.52930 0.89805 1.83460 1.21435 1.27628 1.81446 1.19963 0.93397 0.84949 0.93107 1.21233 1.00542 0.93009 1.11626 1.21306 0.94282 0.96618 0.93991 1.18819 0.92801 0.93283 1.11403 1.22193 0.94673 0.95296 0.87953 1.22682 0.95396 0.96495 1.11652 1.18429 0.81375 0.89904 0.74844 1.90828 1.65469 1.37800 1.52248 1.45427 1.07178 1.08763 1.75981 1.22487 0.84852 0.88773 1.08483 1.20455 0.91469 0.74063 0.73718 1.93233 1.90581 1.80822 1.51641 1.93226 1.84203 1.42524 1.95861 1.93234 1.95153 1.76392 1.51497 1.21377 1.00772 0.89524 0.93927 1.20506 0.90296 1.00092 1.10538 0.90393 0.86942 0.84219 0.85615 0.82450 0.74151 0.86137 0.86136 0.81465 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 13.96 21.62 0.30 -52.85 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 0.97 43.45 28.62 68.60 1.96 45.42 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.40 -22.78 9.94 67.94 0.68 -22.11 16 8 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 9 O -0.23 -11.98 8.57 -20.22 -0.17 -12.16 16 10 C 0.14 5.93 6.66 22.72 0.15 6.08 16 11 C -0.24 -10.11 9.14 22.35 0.20 -9.91 16 12 C -0.04 -1.43 9.78 22.55 0.22 -1.20 16 13 C -0.16 -4.47 5.87 -20.12 -0.12 -4.59 16 14 C 0.02 0.42 9.45 23.82 0.23 0.65 16 15 C -0.24 -4.34 9.41 23.61 0.22 -4.12 16 16 C 0.56 10.84 7.74 86.33 0.67 11.51 16 17 O -0.58 -15.67 16.23 -4.43 -0.07 -15.74 16 18 N -0.72 -8.89 5.41 -467.50 -2.53 -11.41 16 19 C 0.08 0.82 5.64 86.38 0.49 1.31 16 20 C 0.46 4.75 3.11 71.98 0.22 4.97 16 21 F -0.18 -2.17 17.18 44.97 0.77 -1.40 16 22 F -0.18 -2.11 17.32 44.97 0.78 -1.34 16 23 F -0.18 -2.17 17.18 44.97 0.77 -1.40 16 24 C -0.04 -1.00 9.40 22.55 0.21 -0.79 16 25 C -0.20 -6.60 9.97 22.34 0.22 -6.38 16 26 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.11 5.15 5.62 -2.91 -0.02 5.13 16 28 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.13 2.96 7.52 -2.91 -0.02 2.93 16 30 H 0.16 1.87 6.07 -2.91 -0.02 1.85 16 31 H 0.42 3.27 8.34 -92.71 -0.77 2.50 16 32 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.17 2.79 6.16 -2.91 -0.02 2.77 16 35 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -67.68 327.22 6.08 -61.61 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.40 Total: 12.74 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.86 Total: -23.47 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -2.23 Total: -64.27 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.25 Total: -27.90 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 2.32 Total: -4.13 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.96 Total: 45.42 kcal Total: -67.68 6.08 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044565212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.758 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds