Wall clock time and date at job start Tue Mar 31 2020 10:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47092 * 2 1 4 4 C 1.37097 * 119.99891 * 264.76731 * 3 2 1 5 5 H 1.07990 * 120.00102 * 138.84971 * 4 3 2 6 6 C 1.38955 * 120.00031 * 318.85455 * 4 3 2 7 7 N 1.31417 * 119.99739 * 341.83082 * 6 4 3 8 8 Si 1.86796 * 120.00139 * 161.83530 * 6 4 3 9 9 H 1.48493 * 109.47284 * 59.99402 * 8 6 4 10 10 H 1.48504 * 109.46918 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46772 * 299.99202 * 8 6 4 12 12 C 1.34771 * 119.99875 * 84.76820 * 3 2 1 13 13 O 1.21297 * 119.99414 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00305 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.46949 * 180.02562 * 14 12 3 16 16 O 1.42900 * 109.46534 * 180.02562 * 15 14 12 17 17 C 1.35977 * 116.99333 * 180.02562 * 16 15 14 18 18 C 1.38685 * 120.03793 * 0.24513 * 17 16 15 19 19 C 1.38155 * 119.97903 * 180.25412 * 18 17 16 20 20 C 1.38461 * 120.05620 * 359.49952 * 19 18 17 21 21 F 1.35098 * 119.96919 * 180.27564 * 20 19 18 22 22 C 1.38432 * 120.06674 * 0.25489 * 20 19 18 23 23 C 1.38259 * 120.01925 * 359.97438 * 22 20 19 24 24 Cl 1.73604 * 120.02954 * 180.02562 * 23 22 20 25 25 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47273 * 300.00235 * 1 2 3 27 27 H 1.09005 * 109.46833 * 60.00114 * 1 2 3 28 28 H 1.09002 * 109.47273 * 239.99765 * 2 1 3 29 29 H 1.08999 * 109.47124 * 119.99569 * 2 1 3 30 30 H 0.97002 * 119.99778 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47061 * 60.00176 * 14 12 3 32 32 H 1.08997 * 109.47107 * 300.00125 * 14 12 3 33 33 H 1.08997 * 109.47175 * 60.00147 * 15 14 12 34 34 H 1.09004 * 109.46877 * 299.99780 * 15 14 12 35 35 H 1.08003 * 120.00556 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.96914 * 179.77044 * 19 18 17 37 37 H 1.08005 * 119.99366 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0743 3.0217 -1.3535 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0502 1.9004 -3.9239 9 1 3.6538 3.2564 -3.9699 10 1 3.8493 0.9744 -4.7660 11 1 1.6581 1.9605 -4.4374 12 6 2.1426 2.0520 1.1623 13 8 2.5474 3.1955 1.1623 14 6 1.7787 1.3815 2.4619 15 6 2.0097 2.3545 3.6199 16 8 1.6652 1.7184 4.8523 17 6 1.8131 2.4517 5.9878 18 6 2.2752 3.7573 5.9158 19 6 2.4300 4.4995 7.0707 20 6 2.1144 3.9445 8.2993 21 9 2.2612 4.6737 9.4270 22 6 1.6482 2.6431 8.3732 23 6 1.4966 1.8961 7.2197 24 17 0.9113 0.2643 7.3120 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1599 -0.3119 -2.5278 31 1 2.4001 0.4969 2.6008 32 1 0.7292 1.0883 2.4381 33 1 1.3880 3.2389 3.4809 34 1 3.0592 2.6481 3.6439 35 1 2.5174 4.1925 4.9574 36 1 2.7934 5.5151 7.0148 37 1 1.4028 2.2112 9.3322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:53 Heat of formation + Delta-G solvation = -114.836370 kcal Electronic energy + Delta-G solvation = -23253.842232 eV Core-core repulsion = 19357.528063 eV Total energy + Delta-G solvation = -3896.314169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.93037 -41.35425 -40.42817 -38.52748 -37.41910 -36.92769 -34.17334 -32.87160 -32.11344 -31.14468 -30.24411 -27.38833 -25.51247 -24.08516 -23.75035 -23.04210 -20.60725 -19.60119 -18.76593 -18.52996 -17.96639 -17.51268 -17.46648 -16.82455 -16.60300 -16.07654 -15.86268 -15.74050 -15.54252 -15.02034 -14.61021 -14.57473 -14.40751 -14.24097 -13.78727 -13.61682 -13.54319 -13.06269 -12.92333 -12.76404 -12.62077 -12.40783 -12.26543 -12.13704 -12.06949 -11.93283 -11.86836 -11.62628 -10.87592 -10.42135 -10.15443 -9.41337 -9.22384 -8.34282 -6.11275 -0.14422 -0.01724 1.00090 1.40338 1.42310 1.51855 1.82000 2.02659 2.29354 2.32657 3.01388 3.14988 3.18564 3.54644 3.66988 3.88190 3.94649 3.95614 4.05595 4.19290 4.29234 4.45323 4.52177 4.62044 4.71398 4.76813 4.78564 4.91293 4.96137 4.98623 5.07930 5.31486 5.46149 5.49944 5.56306 6.10753 6.23588 6.52604 7.16708 7.44855 8.03766 8.69255 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002802 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.691620 B = 9990.489668 C =10870.277412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.450 5.450 4 C -0.344 4.344 5 H 0.064 0.936 6 C 0.006 3.994 7 N -0.890 5.890 8 Si 0.981 3.019 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.263 1.263 12 C 0.454 3.546 13 O -0.626 6.626 14 C -0.120 4.120 15 C 0.087 3.913 16 O -0.308 6.308 17 C 0.122 3.878 18 C -0.173 4.173 19 C -0.099 4.099 20 C 0.064 3.936 21 F -0.137 7.137 22 C -0.102 4.102 23 C -0.057 4.057 24 Cl -0.046 7.046 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.273 0.727 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 0.324 17.294 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.169 5.169 4 C -0.472 4.472 5 H 0.082 0.918 6 C -0.197 4.197 7 N -0.528 5.528 8 Si 0.804 3.196 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.188 1.188 12 C 0.243 3.757 13 O -0.513 6.513 14 C -0.160 4.160 15 C 0.012 3.988 16 O -0.221 6.221 17 C 0.075 3.925 18 C -0.192 4.192 19 C -0.117 4.117 20 C 0.044 3.956 21 F -0.115 7.115 22 C -0.122 4.122 23 C -0.084 4.084 24 Cl -0.017 7.017 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.427 0.365 17.182 18.023 hybrid contribution 0.344 0.363 -0.920 1.047 sum -5.083 0.728 16.262 17.054 Atomic orbital electron populations 1.22117 0.95170 1.02578 1.01436 1.21603 0.94079 0.83456 1.03234 1.43694 1.55748 1.12994 1.04458 1.19330 1.36735 0.98293 0.92830 0.91784 1.26152 0.93107 0.96567 1.03914 1.69986 1.29261 1.18127 1.35384 0.85198 0.78870 0.78050 0.77469 1.20246 1.19827 1.18780 1.20840 0.81310 0.87485 0.86015 1.90488 1.52373 1.20650 1.87804 1.21353 1.05213 0.99452 0.90015 1.22383 1.00982 0.95472 0.79964 1.86072 1.81767 1.41076 1.13200 1.18950 0.96479 0.91011 0.86088 1.21335 1.04183 0.92801 1.00906 1.21294 0.98632 1.02094 0.89722 1.17368 1.05247 0.90247 0.82700 1.91513 1.93855 1.76758 1.49400 1.20966 0.99960 0.92477 0.98757 1.19934 1.07814 0.89082 0.91611 1.98381 1.86766 1.18053 1.98492 0.89759 0.92464 0.93944 0.90278 0.91365 0.91721 0.87940 0.87091 0.90968 0.91586 0.82881 0.81570 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.15 71.98 0.73 -4.34 16 2 C 0.10 4.08 5.41 86.38 0.47 4.55 16 3 N -0.45 -22.22 2.50 -635.53 -1.59 -23.81 16 4 C -0.34 -18.99 8.84 84.04 0.74 -18.24 16 5 H 0.06 3.75 7.82 -2.92 -0.02 3.73 16 6 C 0.01 0.29 4.95 84.93 0.42 0.71 16 7 N -0.89 -47.32 11.61 21.67 0.25 -47.07 16 8 Si 0.98 41.53 29.59 68.60 2.03 43.56 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 C 0.45 21.24 7.59 87.66 0.67 21.91 16 13 O -0.63 -33.77 15.89 -3.08 -0.05 -33.82 16 14 C -0.12 -4.11 4.68 29.85 0.14 -3.97 16 15 C 0.09 2.68 4.03 71.98 0.29 2.97 16 16 O -0.31 -8.67 9.60 -93.29 -0.90 -9.57 16 17 C 0.12 3.04 6.68 22.51 0.15 3.19 16 18 C -0.17 -3.82 9.04 22.36 0.20 -3.62 16 19 C -0.10 -1.82 10.02 22.30 0.22 -1.60 16 20 C 0.06 1.22 7.30 22.37 0.16 1.38 16 21 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 22 C -0.10 -1.90 9.80 22.32 0.22 -1.69 16 23 C -0.06 -1.28 6.33 22.41 0.14 -1.13 16 24 Cl -0.05 -1.01 28.50 -2.72 -0.08 -1.09 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 1.71 6.60 -2.39 -0.02 1.69 16 27 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 3.66 5.76 -2.39 -0.01 3.65 16 29 H 0.07 2.50 6.66 -2.39 -0.02 2.48 16 30 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.10 3.31 7.41 -2.39 -0.02 3.29 16 32 H 0.11 3.31 6.54 -2.39 -0.02 3.29 16 33 H 0.07 2.20 7.61 -2.39 -0.02 2.19 16 34 H 0.07 2.11 7.63 -2.39 -0.02 2.09 16 35 H 0.15 3.35 6.30 -2.91 -0.02 3.33 16 36 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -64.25 334.12 6.11 -58.14 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.11 Total: 15.39 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.56 Total: 0.11 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.34 Total: -70.88 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.94 Total: -43.38 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -64.25 6.11 -58.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.697 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds