Wall clock time and date at job start Tue Mar 31 2020 10:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42894 * 109.47661 * 239.99197 * 2 1 3 5 5 C 1.35977 * 116.99771 * 84.84724 * 4 2 1 6 6 C 1.38684 * 120.03256 * 354.58627 * 5 4 2 7 7 C 1.38163 * 119.97829 * 180.25316 * 6 5 4 8 8 C 1.38463 * 120.05123 * 359.46862 * 7 6 5 9 9 F 1.35104 * 119.96513 * 180.25330 * 8 7 6 10 10 C 1.38439 * 120.07205 * 0.28086 * 8 7 6 11 11 C 1.38260 * 120.01296 * 359.96929 * 10 8 7 12 12 Cl 1.73599 * 120.02639 * 180.02562 * 11 10 8 13 13 C 1.50707 * 109.47030 * 119.98998 * 2 1 3 14 14 O 1.21284 * 119.99434 * 120.00101 * 13 2 1 15 15 N 1.34770 * 120.00283 * 300.00742 * 13 2 1 16 16 C 1.46505 * 119.99923 * 359.97438 * 15 13 2 17 17 C 1.46500 * 120.00010 * 179.97438 * 15 13 2 18 18 C 1.50694 * 109.47125 * 89.99880 * 17 15 13 19 19 H 1.07998 * 120.00285 * 359.97438 * 18 17 15 20 20 C 1.37883 * 119.99851 * 180.02562 * 18 17 15 21 21 N 1.31514 * 119.99999 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99885 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46707 * 90.00403 * 22 20 18 24 24 H 1.48506 * 109.46938 * 209.99945 * 22 20 18 25 25 H 1.48493 * 109.47419 * 330.00046 * 22 20 18 26 26 H 1.08993 * 109.47538 * 300.00371 * 1 2 3 27 27 H 1.09001 * 109.47208 * 60.00727 * 1 2 3 28 28 H 1.09009 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.01198 * 0.02562 * 6 5 4 30 30 H 1.07997 * 119.97246 * 179.74618 * 7 6 5 31 31 H 1.07991 * 119.99365 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.47061 * 90.00108 * 16 15 13 33 33 H 1.09001 * 109.46770 * 210.00036 * 16 15 13 34 34 H 1.09000 * 109.46895 * 330.00009 * 16 15 13 35 35 H 1.09009 * 109.46813 * 209.99709 * 17 15 13 36 36 H 1.09001 * 109.46999 * 329.99134 * 17 15 13 37 37 H 0.96996 * 120.00391 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.1096 0.0620 -2.3054 6 6 1.6549 1.3720 -2.3291 7 6 1.7556 2.1168 -3.4884 8 6 2.3201 1.5601 -4.6235 9 9 2.4224 2.2917 -5.7547 10 6 2.7795 0.2543 -4.6007 11 6 2.6755 -0.4953 -3.4437 12 17 3.2519 -2.1326 -3.4146 13 6 2.0323 -0.7102 1.2307 14 8 2.7296 -1.6963 1.1194 15 7 1.7066 -0.2497 2.4546 16 6 0.8647 0.9417 2.5889 17 6 2.1945 -0.9405 3.6509 18 6 3.5221 -0.3574 4.0613 19 1 3.9590 0.4469 3.4882 20 6 4.1795 -0.8516 5.1680 21 7 5.3384 -0.3431 5.5259 22 14 3.4242 -2.2434 6.1589 23 1 3.8835 -3.5457 5.6129 24 1 3.8450 -2.1256 7.5782 25 1 1.9437 -2.1652 6.0734 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.2189 1.8085 -1.4428 30 1 1.3977 3.1356 -3.5079 31 1 3.2200 -0.1786 -5.4866 32 1 -0.1834 0.6441 2.6220 33 1 1.1225 1.4670 3.5085 34 1 1.0286 1.6004 1.7360 35 1 1.4763 -0.8148 4.4613 36 1 2.3152 -2.0018 3.4338 37 1 5.8008 -0.6905 6.3046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068934584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:50 Heat of formation + Delta-G solvation = -102.966262 kcal Electronic energy + Delta-G solvation = -23785.702056 eV Core-core repulsion = 19889.902613 eV Total energy + Delta-G solvation = -3895.799443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.91777 -41.83334 -40.46823 -38.44932 -37.42571 -36.75274 -34.86960 -33.24874 -32.05966 -30.52694 -29.95550 -27.70351 -25.79140 -24.76252 -23.98083 -23.00421 -20.39803 -19.73625 -19.14416 -18.56538 -18.28632 -17.42498 -17.12554 -16.90294 -16.60398 -16.33796 -15.93261 -15.73830 -15.39424 -15.19121 -14.67093 -14.48655 -14.48057 -14.23132 -13.78701 -13.72061 -13.65616 -13.44146 -13.09189 -12.85817 -12.62826 -12.48226 -12.37323 -12.17899 -12.03728 -11.94669 -11.88650 -11.74463 -10.84021 -10.66561 -10.14423 -9.46458 -9.22686 -8.34713 -6.40200 -0.13925 -0.02819 1.01586 1.32368 1.37695 1.44873 1.55139 1.63676 2.29934 2.30628 2.52177 3.00053 3.18542 3.37286 3.52488 3.67671 3.80822 3.88056 3.96897 4.12245 4.35250 4.46147 4.58670 4.67200 4.69493 4.77134 4.81188 4.91780 4.92833 4.96546 4.97736 5.20890 5.44345 5.48830 5.55193 6.07767 6.22401 6.58340 6.61687 7.18336 7.31817 8.82121 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.003300 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.337285 B = 8481.629682 C = 8943.496328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 H 0.124 0.876 4 O -0.300 6.300 5 C 0.116 3.884 6 C -0.167 4.167 7 C -0.091 4.091 8 C 0.064 3.936 9 F -0.137 7.137 10 C -0.106 4.106 11 C -0.065 4.065 12 Cl -0.060 7.060 13 C 0.498 3.502 14 O -0.581 6.581 15 N -0.597 5.597 16 C 0.064 3.936 17 C 0.224 3.776 18 C -0.538 4.538 19 H 0.030 0.970 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.947 3.053 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.233 1.233 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.178 0.822 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 7.518 -18.180 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 H 0.141 0.859 4 O -0.213 6.213 5 C 0.070 3.930 6 C -0.186 4.186 7 C -0.109 4.109 8 C 0.044 3.956 9 F -0.115 7.115 10 C -0.126 4.126 11 C -0.092 4.092 12 Cl -0.031 7.031 13 C 0.285 3.715 14 O -0.460 6.460 15 N -0.329 5.329 16 C -0.077 4.077 17 C 0.102 3.898 18 C -0.577 4.577 19 H 0.048 0.952 20 C -0.187 4.187 21 N -0.585 5.585 22 Si 0.769 3.231 23 H -0.206 1.206 24 H -0.200 1.200 25 H -0.156 1.156 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.195 0.805 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.872 6.683 -18.086 24.351 hybrid contribution 0.855 -0.773 0.474 1.247 sum -14.017 5.910 -17.612 23.272 Atomic orbital electron populations 1.22626 0.89293 1.04762 1.06880 1.22415 0.97996 0.96818 0.81456 0.85856 1.86301 1.81090 1.37683 1.16192 1.19092 0.96209 0.91755 0.85989 1.21452 1.04323 0.91544 1.01232 1.21384 0.97296 1.02296 0.89942 1.17426 1.04396 0.89725 0.84023 1.91519 1.94497 1.76491 1.49015 1.20938 1.00945 0.92940 0.97755 1.20071 1.06181 0.88775 0.94184 1.98396 1.87364 1.18643 1.98686 1.20809 0.80388 0.84912 0.85392 1.90694 1.39373 1.29056 1.86884 1.47793 1.50393 1.29862 1.04880 1.22336 0.94785 0.86080 1.04476 1.19389 0.93898 0.92707 0.83823 1.21567 1.05167 1.19380 1.11576 0.95185 1.25856 0.95028 0.99343 0.98501 1.70044 1.16595 1.44310 1.27544 0.85736 0.80975 0.78635 0.77729 1.20639 1.20002 1.15550 0.86604 0.87952 0.92074 0.80463 0.80307 0.81876 0.88862 0.90956 0.88684 0.92240 0.96568 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.80 71.98 0.63 -2.35 16 2 C 0.07 1.91 1.84 29.85 0.05 1.97 16 3 H 0.12 2.52 5.58 -2.39 -0.01 2.51 16 4 O -0.30 -9.37 8.79 -74.25 -0.65 -10.03 16 5 C 0.12 2.87 6.59 22.51 0.15 3.02 16 6 C -0.17 -2.70 8.24 22.36 0.18 -2.51 16 7 C -0.09 -1.24 10.02 22.31 0.22 -1.01 16 8 C 0.06 1.11 7.30 22.37 0.16 1.27 16 9 F -0.14 -2.44 17.27 44.97 0.78 -1.66 16 10 C -0.11 -2.09 9.81 22.32 0.22 -1.87 16 11 C -0.06 -1.61 6.33 22.41 0.14 -1.47 16 12 Cl -0.06 -1.71 28.50 -2.72 -0.08 -1.78 16 13 C 0.50 19.84 7.15 87.66 0.63 20.47 16 14 O -0.58 -30.48 16.08 16.00 0.26 -30.22 16 15 N -0.60 -22.53 2.86 -851.11 -2.43 -24.96 16 16 C 0.06 1.49 8.80 127.77 1.12 2.62 16 17 C 0.22 10.54 4.23 85.63 0.36 10.90 16 18 C -0.54 -31.18 9.94 25.60 0.25 -30.92 16 19 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 20 C 0.01 0.64 5.47 84.66 0.46 1.10 16 21 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 22 Si 0.95 43.93 27.47 68.60 1.88 45.82 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.23 -9.47 6.54 99.48 0.65 -8.82 16 26 H 0.12 1.36 4.53 -2.39 -0.01 1.35 16 27 H 0.10 1.10 6.90 -2.39 -0.02 1.08 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.18 1.77 5.42 -2.91 -0.02 1.75 16 30 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.16 2.64 8.06 -2.92 -0.02 2.62 16 32 H 0.09 1.46 6.95 -2.39 -0.02 1.44 16 33 H 0.07 1.84 8.07 -2.39 -0.02 1.82 16 34 H 0.09 1.52 6.01 -2.39 -0.01 1.50 16 35 H 0.06 2.49 7.13 -2.38 -0.02 2.48 16 36 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -82.86 328.26 5.72 -77.14 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.06 Total: 3.70 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.60 Total: 1.20 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.13 Total: -84.17 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.40 Total: -40.25 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -82.86 5.72 -77.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068934584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.824 kcal (2) G-P(sol) polarization free energy of solvation -82.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds