Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99542 * 2 1 4 4 C 1.50702 * 109.46956 * 269.99594 * 3 2 1 5 5 H 1.07994 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99721 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00180 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99786 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47076 * 89.99736 * 8 6 4 10 10 H 1.48503 * 109.46786 * 209.99868 * 8 6 4 11 11 H 1.48506 * 109.46836 * 329.99869 * 8 6 4 12 12 C 1.34777 * 120.00294 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99704 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99746 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.46755 * 179.97438 * 14 12 2 16 16 O 1.42901 * 109.46981 * 179.97438 * 15 14 12 17 17 C 1.35937 * 117.00075 * 180.02562 * 16 15 14 18 18 C 1.38729 * 120.02341 * 0.25610 * 17 16 15 19 19 C 1.38150 * 119.99246 * 180.23583 * 18 17 16 20 20 C 1.38445 * 120.04234 * 359.48625 * 19 18 17 21 21 F 1.35091 * 119.97710 * 180.25999 * 20 19 18 22 22 C 1.38553 * 120.04706 * 0.28136 * 20 19 18 23 23 Cl 1.73599 * 119.99437 * 179.97438 * 22 20 19 24 24 C 1.38274 * 120.00637 * 359.97438 * 22 20 19 25 25 H 1.08993 * 109.47258 * 270.00168 * 1 2 3 26 26 H 1.09004 * 109.46940 * 30.00590 * 1 2 3 27 27 H 1.09002 * 109.46475 * 150.00131 * 1 2 3 28 28 H 1.08989 * 109.47322 * 29.99835 * 3 2 1 29 29 H 1.09002 * 109.47004 * 149.99801 * 3 2 1 30 30 H 0.96990 * 119.99742 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46856 * 60.00212 * 14 12 2 32 32 H 1.08995 * 109.46742 * 299.99535 * 14 12 2 33 33 H 1.09003 * 109.46784 * 59.99945 * 15 14 12 34 34 H 1.09001 * 109.47151 * 300.00141 * 15 14 12 35 35 H 1.08002 * 120.00804 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.98274 * 179.77148 * 19 18 17 37 37 H 1.08000 * 120.01560 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2416 6 6 3.1268 2.8776 -1.6728 7 7 3.5540 3.6178 -0.6731 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2606 -3.9000 10 1 4.6982 4.1995 -3.4968 11 1 3.5539 2.2201 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 8 1.6654 -4.8728 0.0011 17 6 2.4058 -6.0128 0.0017 18 6 3.7912 -5.9407 0.0071 19 6 4.5430 -7.0997 0.0028 20 6 3.9148 -8.3334 0.0039 21 9 4.6513 -9.4659 0.0050 22 6 2.5313 -8.4074 0.0034 23 17 1.7450 -9.9551 0.0040 24 6 1.7768 -7.2487 0.0023 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1498 1.1386 0.5139 30 1 4.0307 4.4436 -0.8504 31 1 0.7592 -2.5302 -0.8897 32 1 0.7586 -2.5298 0.8903 33 1 3.0065 -3.5773 0.8905 34 1 3.0065 -3.5774 -0.8895 35 1 4.2820 -4.9787 0.0104 36 1 5.6216 -7.0434 0.0033 37 1 0.6983 -7.3062 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070168599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = -100.867542 kcal Electronic energy + Delta-G solvation = -22691.076456 eV Core-core repulsion = 18795.368021 eV Total energy + Delta-G solvation = -3895.708436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15948 -40.49865 -39.13937 -37.82856 -36.68271 -34.97264 -32.81623 -32.07957 -31.27926 -29.52180 -27.88153 -26.02861 -24.82903 -23.48738 -22.70607 -21.76384 -18.99640 -18.32294 -17.74383 -17.17030 -16.72621 -16.40861 -16.16720 -15.92746 -15.56802 -15.18339 -14.74810 -14.59671 -14.27449 -14.20490 -13.69396 -13.46995 -12.95983 -12.89630 -12.68039 -12.29121 -12.15787 -12.04980 -11.90073 -11.53818 -11.48972 -11.27694 -11.09605 -10.95702 -10.76076 -10.62738 -10.22462 -9.70631 -9.39529 -9.11585 -8.49834 -8.47696 -7.77074 -6.10751 -4.15960 0.56725 0.76186 1.54586 2.79414 3.06193 3.23594 3.26118 3.33086 3.37563 3.79036 3.95640 4.23500 4.39505 4.53815 4.70313 4.80430 4.88047 4.92082 5.08691 5.24047 5.25981 5.39429 5.51267 5.58260 5.66961 5.68571 5.73306 5.83970 5.87298 6.13551 6.14667 6.94112 7.01480 7.34570 7.42308 7.84883 8.15331 8.27058 8.79239 8.94470 9.49354 10.97394 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025384 B = 0.002252 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.772309 B =12432.231126 C =12946.932864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.509 3.491 13 O -0.545 6.545 14 C -0.139 4.139 15 C 0.073 3.927 16 O -0.310 6.310 17 C 0.144 3.856 18 C -0.174 4.174 19 C -0.097 4.097 20 C 0.065 3.935 21 F -0.130 7.130 22 C -0.036 4.036 23 Cl -0.045 7.045 24 C -0.122 4.122 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -22.046 2.872 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.330 5.330 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.179 4.179 15 C -0.002 4.002 16 O -0.223 6.223 17 C 0.098 3.902 18 C -0.193 4.193 19 C -0.116 4.116 20 C 0.044 3.956 21 F -0.109 7.109 22 C -0.063 4.063 23 Cl -0.016 7.016 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.902 -21.977 2.921 22.706 hybrid contribution 0.319 0.219 -0.994 1.067 sum -4.583 -21.758 1.926 22.319 Atomic orbital electron populations 1.21696 0.81155 1.02843 1.00657 1.48144 1.06386 1.07720 1.70772 1.19334 0.92592 0.77889 0.97648 1.21410 1.36713 1.06389 0.92197 0.92443 1.24946 0.95284 0.96373 0.97518 1.69926 1.38271 1.14315 1.30783 0.86484 0.77732 0.78620 0.84515 1.20595 1.21041 1.19879 1.19924 0.87893 0.84820 0.77873 1.90688 1.13767 1.87290 1.50589 1.21540 0.99212 0.91850 1.05340 1.22636 0.94490 0.79653 1.03458 1.86014 1.35788 1.12688 1.87818 1.18745 0.89747 0.86573 0.95175 1.21436 0.92725 1.00142 1.05013 1.20957 1.01414 0.89670 0.99603 1.17252 0.87212 0.83083 1.08004 1.91523 1.76477 1.48689 1.94184 1.20593 0.90876 0.88301 1.06580 1.98394 1.80142 1.26293 1.96794 1.20087 1.01168 0.87604 1.05292 0.93495 0.90580 0.92229 0.94830 0.93733 0.92637 0.88172 0.88332 0.90617 0.90495 0.83125 0.83328 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.24 59.85 0.61 1.78 16 2 N -0.60 -11.94 2.86 -182.95 -0.52 -12.46 16 3 C 0.24 6.17 5.16 -5.19 -0.03 6.14 16 4 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.51 9.66 7.67 -10.99 -0.08 9.58 16 13 O -0.54 -12.60 15.56 5.55 0.09 -12.51 16 14 C -0.14 -1.81 4.62 -27.88 -0.13 -1.94 16 15 C 0.07 0.89 4.03 37.16 0.15 1.04 16 16 O -0.31 -3.56 10.14 -19.54 -0.20 -3.75 16 17 C 0.14 1.54 6.68 -39.24 -0.26 1.28 16 18 C -0.17 -1.73 9.04 -39.43 -0.36 -2.09 16 19 C -0.10 -0.90 10.02 -39.54 -0.40 -1.30 16 20 C 0.06 0.67 7.27 -39.39 -0.29 0.38 16 21 F -0.13 -1.42 16.83 2.25 0.04 -1.39 16 22 C -0.04 -0.36 6.32 -39.45 -0.25 -0.61 16 23 Cl -0.05 -0.43 28.61 -51.86 -1.48 -1.91 16 24 C -0.12 -1.19 9.77 -39.41 -0.38 -1.58 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 28 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.10 1.16 7.40 -51.93 -0.38 0.78 16 32 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.08 0.93 7.61 -51.93 -0.39 0.54 16 34 H 0.08 0.99 7.63 -51.93 -0.40 0.59 16 35 H 0.15 1.42 6.30 -52.49 -0.33 1.09 16 36 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.79 341.24 -7.35 -39.14 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.30 Total: -2.73 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.83 Total: -0.59 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.21 Total: -37.77 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.11 Total: -16.26 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -7.35 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070168599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.728 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds