Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99542 * 2 1 4 4 C 1.50702 * 109.46956 * 269.99594 * 3 2 1 5 5 H 1.07994 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99721 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00180 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99786 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47076 * 89.99736 * 8 6 4 10 10 H 1.48503 * 109.46786 * 209.99868 * 8 6 4 11 11 H 1.48506 * 109.46836 * 329.99869 * 8 6 4 12 12 C 1.34777 * 120.00294 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99704 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99746 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.46755 * 179.97438 * 14 12 2 16 16 O 1.42901 * 109.46981 * 179.97438 * 15 14 12 17 17 C 1.35937 * 117.00075 * 180.02562 * 16 15 14 18 18 C 1.38729 * 120.02341 * 0.25610 * 17 16 15 19 19 C 1.38150 * 119.99246 * 180.23583 * 18 17 16 20 20 C 1.38445 * 120.04234 * 359.48625 * 19 18 17 21 21 F 1.35091 * 119.97710 * 180.25999 * 20 19 18 22 22 C 1.38553 * 120.04706 * 0.28136 * 20 19 18 23 23 Cl 1.73599 * 119.99437 * 179.97438 * 22 20 19 24 24 C 1.38274 * 120.00637 * 359.97438 * 22 20 19 25 25 H 1.08993 * 109.47258 * 270.00168 * 1 2 3 26 26 H 1.09004 * 109.46940 * 30.00590 * 1 2 3 27 27 H 1.09002 * 109.46475 * 150.00131 * 1 2 3 28 28 H 1.08989 * 109.47322 * 29.99835 * 3 2 1 29 29 H 1.09002 * 109.47004 * 149.99801 * 3 2 1 30 30 H 0.96990 * 119.99742 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46856 * 60.00212 * 14 12 2 32 32 H 1.08995 * 109.46742 * 299.99535 * 14 12 2 33 33 H 1.09003 * 109.46784 * 59.99945 * 15 14 12 34 34 H 1.09001 * 109.47151 * 300.00141 * 15 14 12 35 35 H 1.08002 * 120.00804 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.98274 * 179.77148 * 19 18 17 37 37 H 1.08000 * 120.01560 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2416 6 6 3.1268 2.8776 -1.6728 7 7 3.5540 3.6178 -0.6731 8 14 3.4376 3.4171 -3.4340 9 1 2.3077 4.2606 -3.9000 10 1 4.6982 4.1995 -3.4968 11 1 3.5539 2.2201 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 8 1.6654 -4.8728 0.0011 17 6 2.4058 -6.0128 0.0017 18 6 3.7912 -5.9407 0.0071 19 6 4.5430 -7.0997 0.0028 20 6 3.9148 -8.3334 0.0039 21 9 4.6513 -9.4659 0.0050 22 6 2.5313 -8.4074 0.0034 23 17 1.7450 -9.9551 0.0040 24 6 1.7768 -7.2487 0.0023 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1498 1.1386 0.5139 30 1 4.0307 4.4436 -0.8504 31 1 0.7592 -2.5302 -0.8897 32 1 0.7586 -2.5298 0.8903 33 1 3.0065 -3.5773 0.8905 34 1 3.0065 -3.5774 -0.8895 35 1 4.2820 -4.9787 0.0104 36 1 5.6216 -7.0434 0.0033 37 1 0.6983 -7.3062 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070168599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = -119.469373 kcal Electronic energy + Delta-G solvation = -22691.883092 eV Core-core repulsion = 18795.368021 eV Total energy + Delta-G solvation = -3896.515072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.97799 -41.37620 -40.57462 -38.67752 -37.45807 -36.62456 -34.76526 -33.22492 -32.11312 -30.44983 -29.61005 -27.36422 -26.17597 -24.60367 -23.90195 -22.84487 -20.12149 -19.49577 -18.70968 -18.60103 -18.01904 -17.50180 -17.48451 -17.05547 -16.79277 -16.31669 -16.12751 -15.90154 -15.44058 -14.99488 -14.61789 -14.53753 -14.26055 -14.05142 -13.81722 -13.73508 -13.44297 -13.37486 -13.19811 -12.88405 -12.78462 -12.50088 -12.41622 -12.26874 -12.20272 -11.93043 -11.71313 -11.65090 -10.69346 -10.63976 -10.14477 -9.43352 -9.28974 -8.22518 -6.37213 -0.20208 -0.01307 0.77845 1.37628 1.40119 1.50230 1.76771 1.82243 2.28858 2.36745 2.62526 3.02196 3.07457 3.48656 3.66427 3.76402 3.90779 3.94703 4.04010 4.11927 4.35663 4.48604 4.59865 4.70290 4.73598 4.79151 4.80056 4.91353 4.99579 5.03400 5.06700 5.23760 5.35342 5.55594 5.82453 6.05620 6.14696 6.68659 6.77016 7.27299 7.43702 8.84496 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025384 B = 0.002252 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.772309 B =12432.231126 C =12946.932864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.500 3.500 13 O -0.597 6.597 14 C -0.122 4.122 15 C 0.078 3.922 16 O -0.307 6.307 17 C 0.132 3.868 18 C -0.178 4.178 19 C -0.094 4.094 20 C 0.055 3.945 21 F -0.135 7.135 22 C -0.041 4.041 23 Cl -0.041 7.041 24 C -0.118 4.118 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.024 0.976 29 H 0.000 1.000 30 H 0.267 0.733 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -23.203 2.008 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.289 3.711 13 O -0.479 6.479 14 C -0.162 4.162 15 C 0.002 3.998 16 O -0.221 6.221 17 C 0.085 3.915 18 C -0.197 4.197 19 C -0.113 4.113 20 C 0.034 3.966 21 F -0.114 7.114 22 C -0.069 4.069 23 Cl -0.012 7.012 24 C -0.137 4.137 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.042 0.958 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.453 -23.161 2.061 24.131 hybrid contribution 0.780 0.517 -0.673 1.153 sum -5.674 -22.643 1.388 23.384 Atomic orbital electron populations 1.21999 0.77602 1.04264 1.02840 1.48159 1.08600 1.06308 1.70866 1.18783 0.91219 0.80364 0.96037 1.21704 1.36738 1.06536 0.93077 0.92719 1.25861 0.94970 0.96509 1.01890 1.70046 1.38974 1.14798 1.33021 0.85421 0.78002 0.78248 0.79178 1.18926 1.20780 1.19642 1.20942 0.87633 0.86342 0.76199 1.90658 1.16387 1.88197 1.52670 1.21415 0.98789 0.88063 1.07894 1.22457 0.94237 0.80099 1.02963 1.85975 1.35526 1.12441 1.88135 1.18891 0.90065 0.86548 0.95975 1.21522 0.92711 1.00476 1.04942 1.21148 1.02430 0.89029 0.98689 1.17440 0.87459 0.83239 1.08424 1.91509 1.76623 1.49006 1.94278 1.20685 0.90931 0.88675 1.06634 1.98395 1.80026 1.25997 1.96772 1.20206 1.01918 0.87040 1.04535 0.90885 0.91636 0.88355 0.95782 0.98174 0.92414 0.85763 0.85231 0.90992 0.91457 0.82962 0.81441 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 10.24 127.77 1.31 3.30 16 2 N -0.61 -24.01 2.86 -851.12 -2.43 -26.45 16 3 C 0.26 13.41 5.16 85.63 0.44 13.85 16 4 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.50 18.71 7.67 87.66 0.67 19.39 16 13 O -0.60 -28.35 15.56 -3.04 -0.05 -28.40 16 14 C -0.12 -2.84 4.62 29.85 0.14 -2.70 16 15 C 0.08 1.79 4.03 71.98 0.29 2.08 16 16 O -0.31 -6.35 10.14 -92.84 -0.94 -7.29 16 17 C 0.13 2.59 6.68 22.49 0.15 2.74 16 18 C -0.18 -3.33 9.04 22.37 0.20 -3.13 16 19 C -0.09 -1.63 10.02 22.30 0.22 -1.40 16 20 C 0.05 1.06 7.27 22.39 0.16 1.22 16 21 F -0.14 -2.83 16.83 44.97 0.76 -2.07 16 22 C -0.04 -0.78 6.32 22.35 0.14 -0.64 16 23 Cl -0.04 -0.72 28.61 -2.72 -0.08 -0.80 16 24 C -0.12 -2.09 9.77 22.38 0.22 -1.87 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.89 8.07 -2.38 -0.02 1.87 16 27 H 0.10 1.85 6.44 -2.39 -0.02 1.84 16 28 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 29 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 30 H 0.27 14.90 8.31 -92.72 -0.77 14.13 16 31 H 0.12 2.36 7.40 -2.39 -0.02 2.34 16 32 H 0.13 2.28 8.11 -2.39 -0.02 2.26 16 33 H 0.07 1.71 7.61 -2.39 -0.02 1.69 16 34 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 35 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -70.88 341.24 5.32 -65.55 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.10 Total: 4.89 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 4.65 Total: 3.56 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.15 Total: -81.41 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.99 Total: -35.69 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.76 Total: -2.07 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -70.88 5.32 -65.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070168599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.915 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds