Wall clock time and date at job start Tue Mar 31 2020 11:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00053 * 2 1 4 4 C 1.53001 * 109.47573 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46907 * 65.00250 * 4 3 2 6 6 C 1.46503 * 119.99942 * 274.87405 * 5 4 3 7 7 C 1.50707 * 109.46701 * 269.99722 * 6 5 4 8 8 H 1.07997 * 119.99842 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99751 * 179.97438 * 7 6 5 10 10 N 1.31521 * 120.00408 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99988 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47015 * 60.00552 * 11 9 7 13 13 H 1.48504 * 109.47396 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47127 * 300.00333 * 11 9 7 15 15 C 1.34774 * 120.00352 * 94.86794 * 5 4 3 16 16 O 1.21576 * 120.00327 * 185.57833 * 15 5 4 17 17 C 1.47630 * 119.99877 * 5.57764 * 15 5 4 18 18 C 1.39699 * 120.15035 * 55.01907 * 17 15 5 19 19 C 1.37804 * 119.89083 * 180.27143 * 18 17 15 20 20 C 1.38609 * 120.20185 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 119.84282 * 180.02562 * 20 19 18 22 22 C 1.38351 * 120.31400 * 0.02562 * 20 19 18 23 23 C 1.38255 * 120.10654 * 359.97438 * 22 20 19 24 24 F 1.35102 * 120.10424 * 179.97438 * 23 22 20 25 25 H 1.08996 * 109.47712 * 299.99557 * 1 2 3 26 26 H 1.09002 * 109.47225 * 60.00266 * 1 2 3 27 27 H 1.09005 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47521 * 59.99852 * 3 2 1 29 29 H 1.09006 * 109.47383 * 300.00332 * 3 2 1 30 30 H 1.08995 * 109.46975 * 305.00460 * 4 3 2 31 31 H 1.09003 * 109.47579 * 184.99855 * 4 3 2 32 32 H 1.08996 * 109.47217 * 29.99328 * 6 5 4 33 33 H 1.08997 * 109.47508 * 149.99709 * 6 5 4 34 34 H 0.96998 * 120.00267 * 179.97438 * 10 9 7 35 35 H 1.08002 * 120.05607 * 0.26029 * 18 17 15 36 36 H 1.07996 * 119.89449 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.94528 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0041 -0.8954 -1.3749 7 6 5.3511 -1.4113 -0.9383 8 1 6.1105 -0.7211 -0.6017 9 6 5.6136 -2.7645 -0.9675 10 7 4.6887 -3.6051 -1.3770 11 14 7.2834 -3.4039 -0.4270 12 1 7.5254 -3.0221 0.9876 13 1 7.3114 -4.8834 -0.5525 14 1 8.3411 -2.8146 -1.2867 15 6 4.3571 1.3357 -2.2883 16 8 4.6260 0.8259 -3.3588 17 6 4.4474 2.8002 -2.1248 18 6 5.2341 3.3454 -1.1073 19 6 5.3100 4.7130 -0.9560 20 6 4.6079 5.5491 -1.8100 21 17 4.7109 7.2706 -1.6114 22 6 3.8255 5.0181 -2.8199 23 6 3.7400 3.6479 -2.9834 24 9 2.9755 3.1294 -3.9692 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8507 0.5685 0.8426 31 1 3.9784 2.1766 0.0902 32 1 3.2275 -1.3283 -0.7445 33 1 3.8271 -1.1753 -2.4134 34 1 4.8735 -4.5571 -1.3979 35 1 5.7816 2.6962 -0.4401 36 1 5.9185 5.1346 -0.1697 37 1 3.2813 5.6751 -3.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:28 Heat of formation + Delta-G solvation = -119.821453 kcal Electronic energy + Delta-G solvation = -24367.740746 eV Core-core repulsion = 20471.210408 eV Total energy + Delta-G solvation = -3896.530339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.15453 -41.34767 -39.59924 -38.78990 -37.51553 -36.63120 -34.81225 -32.50455 -31.77813 -31.07717 -29.01188 -27.14894 -25.77254 -24.59015 -23.85767 -23.59332 -20.71542 -18.89813 -18.66904 -18.43853 -17.87699 -17.66722 -17.07633 -16.81879 -16.70189 -16.47406 -16.17757 -15.94787 -15.51511 -15.16032 -14.73521 -14.61914 -14.35179 -14.17322 -13.70988 -13.48370 -13.40611 -13.08641 -12.91088 -12.79415 -12.66624 -12.56196 -12.35291 -12.17091 -12.07474 -11.97090 -11.70822 -10.92570 -10.63132 -10.55901 -10.16149 -9.89402 -9.49349 -8.18030 -6.33387 -0.47682 -0.09308 0.86889 1.38682 1.43894 1.50507 1.58718 2.09289 2.28566 2.44130 2.92699 3.00579 3.12249 3.36524 3.53062 3.84668 3.94453 4.11061 4.20916 4.29027 4.33666 4.42849 4.50561 4.54786 4.62386 4.79622 4.83522 4.87463 4.90061 4.97820 5.18206 5.29460 5.44156 5.54404 5.83726 6.08466 6.28724 6.63345 6.75685 7.18539 7.38454 8.89684 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.004268 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.987565 B = 6558.330908 C = 7447.390010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.046 3.954 4 C 0.097 3.903 5 N -0.581 5.581 6 C 0.268 3.732 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.970 3.030 12 H -0.256 1.256 13 H -0.282 1.282 14 H -0.276 1.276 15 C 0.540 3.460 16 O -0.588 6.588 17 C -0.162 4.162 18 C -0.049 4.049 19 C -0.100 4.100 20 C 0.009 3.991 21 Cl -0.035 7.035 22 C -0.138 4.138 23 C 0.130 3.870 24 F -0.141 7.141 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.037 0.963 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.184 0.816 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 22.738 6.988 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.031 4.031 4 C -0.025 4.025 5 N -0.309 5.309 6 C 0.147 3.853 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.794 3.206 12 H -0.180 1.180 13 H -0.207 1.207 14 H -0.202 1.202 15 C 0.328 3.672 16 O -0.469 6.469 17 C -0.167 4.167 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.019 4.019 21 Cl -0.006 7.006 22 C -0.158 4.158 23 C 0.109 3.891 24 F -0.120 7.120 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.055 0.945 33 H 0.004 0.996 34 H 0.075 0.925 35 H 0.181 0.819 36 H 0.202 0.798 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.480 22.221 6.420 23.390 hybrid contribution 0.099 -0.912 -0.630 1.113 sum -3.380 21.308 5.789 22.338 Atomic orbital electron populations 1.22859 0.80086 1.03152 1.00723 1.88049 1.21147 1.28663 1.95479 1.23129 0.93740 0.84914 1.01335 1.22147 0.93238 1.00691 0.86455 1.48078 1.61795 1.07801 1.13258 1.18783 0.96613 0.74658 0.95216 1.21713 0.99578 0.92684 1.44340 0.92108 1.25904 1.01281 0.96956 0.95129 1.70089 1.35760 1.03267 1.47797 0.85435 0.78738 0.77024 0.79396 1.18032 1.20690 1.20189 1.18669 0.77629 0.87123 0.83825 1.90755 1.51949 1.75851 1.28389 1.20184 1.03895 0.92168 1.00406 1.21331 0.95132 0.95975 0.94333 1.21376 0.99310 0.91011 1.00082 1.20849 0.98105 0.86576 0.96333 1.98411 1.97019 1.08535 1.96640 1.21022 1.02269 0.91750 1.00719 1.17677 0.92837 0.91700 0.86867 1.91528 1.73114 1.87683 1.59625 0.91601 0.94278 0.89934 0.88562 0.94360 0.89312 0.85593 0.94490 0.99609 0.92543 0.81939 0.79828 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.81 9.09 -148.98 -1.35 -16.17 16 3 C 0.05 1.31 6.28 71.98 0.45 1.76 16 4 C 0.10 3.05 5.68 86.38 0.49 3.54 16 5 N -0.58 -25.76 2.44 -829.80 -2.03 -27.79 16 6 C 0.27 15.18 5.02 85.63 0.43 15.61 16 7 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 11 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 C 0.54 24.26 6.84 86.72 0.59 24.85 16 16 O -0.59 -33.25 16.46 -3.95 -0.07 -33.32 16 17 C -0.16 -5.15 4.91 -20.05 -0.10 -5.25 16 18 C -0.05 -1.07 7.47 22.52 0.17 -0.90 16 19 C -0.10 -1.48 9.81 22.26 0.22 -1.27 16 20 C 0.01 0.14 6.32 22.39 0.14 0.28 16 21 Cl -0.04 -0.46 28.95 -2.72 -0.08 -0.54 16 22 C -0.14 -2.77 9.79 22.30 0.22 -2.55 16 23 C 0.13 3.79 7.27 22.67 0.16 3.95 16 24 F -0.14 -5.01 16.69 44.97 0.75 -4.26 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.09 2.90 8.11 -2.39 -0.02 2.88 16 31 H 0.13 2.89 4.42 -2.39 -0.01 2.88 16 32 H 0.04 2.18 6.68 -2.39 -0.02 2.17 16 33 H -0.01 -0.95 7.35 -2.39 -0.02 -0.97 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.16 3.22 7.59 -2.91 -0.02 3.20 16 36 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -81.43 340.12 5.36 -76.06 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.10 Total: 5.24 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.73 Total: 11.27 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.74 Total: -85.44 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.42 Total: -49.48 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.75 Total: -4.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -81.43 5.36 -76.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.758 kcal (2) G-P(sol) polarization free energy of solvation -81.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds