Wall clock time and date at job start Tue Mar 31 2020 11:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.47017 * 110.99979 * 66.04540 * 12 11 10 14 14 C 1.53099 * 109.25894 * 177.60504 * 13 12 11 15 15 O 1.43014 * 109.25447 * 56.85457 * 14 13 12 16 16 C 1.43021 * 113.73578 * 301.32258 * 15 14 13 17 17 H 1.09003 * 109.51074 * 298.74047 * 16 15 14 18 18 C 1.50706 * 109.50511 * 178.65382 * 16 15 14 19 19 C 1.33349 * 125.18702 * 144.72720 * 18 16 15 20 20 C 1.38468 * 114.92702 * 179.79143 * 19 18 16 21 21 C 1.33507 * 114.88532 * 0.49795 * 20 19 18 22 22 Cl 1.73602 * 125.21032 * 179.75265 * 21 20 19 23 23 S 1.75871 * 125.18853 * 325.02594 * 18 16 15 24 24 C 1.47015 * 111.00070 * 302.41452 * 12 11 10 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.08997 * 109.50849 * 297.54548 * 13 12 11 33 33 H 1.09008 * 109.50403 * 57.62630 * 13 12 11 34 34 H 1.09002 * 109.50515 * 176.78090 * 14 13 12 35 35 H 1.08991 * 109.50720 * 296.87108 * 14 13 12 36 36 H 1.07996 * 122.53264 * 359.97205 * 19 18 16 37 37 H 1.07994 * 122.55942 * 180.22635 * 20 19 18 38 38 H 1.08999 * 109.50410 * 302.32251 * 24 12 11 39 39 H 1.08998 * 109.50957 * 62.45561 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.2018 -6.1418 1.2543 14 6 4.1393 -7.3521 1.2361 15 8 4.9858 -7.2757 0.0859 16 6 4.2719 -7.2375 -1.1527 17 1 3.6866 -8.1503 -1.2639 18 6 5.2498 -7.1245 -2.2939 19 6 5.1025 -7.6929 -3.4911 20 6 6.1306 -7.4454 -4.3851 21 6 7.1181 -6.6838 -3.9087 22 17 8.5357 -6.2136 -4.7937 23 16 6.7628 -6.2292 -2.2472 24 6 3.3357 -6.0261 -1.1588 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.7886 -5.2283 1.3501 33 1 2.5163 -6.2242 2.0979 34 1 4.7508 -7.3524 2.1385 35 1 3.5503 -8.2682 1.1952 36 1 4.2448 -8.2979 -3.7453 37 1 6.1354 -7.8420 -5.3895 38 1 2.7481 -6.0248 -2.0768 39 1 3.9246 -5.1107 -1.1016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075023854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:33 Heat of formation + Delta-G solvation = -20.539125 kcal Electronic energy + Delta-G solvation = -21477.028429 eV Core-core repulsion = 18151.016471 eV Total energy + Delta-G solvation = -3326.011958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93766 -38.12107 -36.82619 -36.35087 -33.46608 -32.38055 -31.26041 -29.01967 -27.59745 -25.36022 -24.69422 -23.30756 -22.44041 -21.14070 -19.76891 -19.34700 -18.03790 -16.56745 -16.32211 -15.90758 -15.78650 -15.16896 -14.74630 -14.68155 -14.22312 -13.96893 -13.85889 -13.63049 -13.44701 -12.87108 -12.47752 -12.29461 -12.03472 -12.00761 -11.67376 -11.47532 -11.28541 -11.09438 -10.92483 -10.88302 -10.74737 -10.72892 -10.49828 -9.82092 -9.68020 -9.48471 -9.21536 -8.75847 -8.69516 -8.37420 -8.04664 -6.02400 -4.05113 0.56844 0.91845 1.68673 2.03433 2.34721 3.30142 3.36440 3.39936 3.50701 3.96086 4.44002 4.63968 4.79356 4.95820 5.03167 5.07454 5.18815 5.23195 5.31977 5.33334 5.51941 5.63149 5.65747 5.73750 5.83599 5.87523 5.90759 6.01268 6.07206 6.20793 6.49787 6.68038 6.94806 6.96424 7.13054 7.23971 7.62622 7.76311 7.96529 8.39780 9.01628 9.59323 11.08661 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003436 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.169681 B = 8148.201829 C = 9801.700399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.146 4.146 11 C 0.053 3.947 12 N -0.536 5.536 13 C 0.010 3.990 14 C 0.068 3.932 15 O -0.381 6.381 16 C 0.166 3.834 17 H 0.087 0.913 18 C -0.164 4.164 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.161 4.161 22 Cl -0.019 7.019 23 S 0.198 5.802 24 C 0.025 3.975 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.838 -19.120 -4.957 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.184 4.184 11 C -0.074 4.074 12 N -0.260 5.260 13 C -0.119 4.119 14 C -0.009 4.009 15 O -0.300 6.300 16 C 0.106 3.894 17 H 0.104 0.896 18 C -0.283 4.283 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.305 4.305 22 Cl 0.010 6.990 23 S 0.462 5.538 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.508 -18.525 -3.960 22.701 hybrid contribution -0.019 1.049 -1.171 1.572 sum 12.489 -17.476 -5.131 22.084 Atomic orbital electron populations 1.69961 1.06033 1.26615 1.50851 1.25016 0.94841 0.99229 0.95283 0.86618 0.79878 0.83520 0.78163 1.20617 1.21159 1.19896 1.21244 0.92938 0.91155 1.50614 0.92901 1.19005 0.93791 0.91198 0.97179 1.22232 1.00038 0.95822 1.00341 1.22361 0.94251 0.88100 1.02693 1.62564 1.16865 1.45117 1.01448 1.22830 0.96914 0.98465 0.93646 1.22696 0.92738 0.97460 0.88001 1.87974 1.33417 1.94997 1.13657 1.20388 0.88842 0.98925 0.81268 0.89552 1.24342 1.00299 1.04680 0.99020 1.19844 1.00684 1.02958 0.92134 1.20106 0.92937 1.00177 1.01880 1.25455 0.96330 1.09425 0.99337 1.98363 1.36181 1.90881 1.73616 1.84736 1.14993 1.49229 1.04802 1.22784 0.95048 0.97011 0.95562 0.92983 0.96601 0.96610 0.93342 0.93200 0.90763 0.90751 0.92987 0.89490 0.88272 0.92237 0.83275 0.83394 0.89359 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 10 C -0.15 -2.94 4.44 -26.74 -0.12 -3.06 16 11 C 0.05 0.87 5.38 -3.83 -0.02 0.85 16 12 N -0.54 -7.59 4.94 -234.30 -1.16 -8.74 16 13 C 0.01 0.13 5.33 -3.71 -0.02 0.11 16 14 C 0.07 0.73 7.01 37.21 0.26 1.00 16 15 O -0.38 -4.85 10.19 -35.23 -0.36 -5.21 16 16 C 0.17 1.97 3.24 -27.83 -0.09 1.88 16 17 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.16 -1.89 5.52 -36.01 -0.20 -2.09 16 19 C -0.13 -1.23 10.04 -41.20 -0.41 -1.65 16 20 C -0.12 -1.16 10.13 -41.15 -0.42 -1.57 16 21 C -0.16 -1.77 7.10 29.08 0.21 -1.56 16 22 Cl -0.02 -0.19 29.29 -51.86 -1.52 -1.71 16 23 S 0.20 2.37 23.03 -107.50 -2.48 -0.11 16 24 C 0.02 0.34 4.40 -3.71 -0.02 0.32 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.99 6.61 -51.93 -0.34 0.64 16 29 H 0.05 1.02 6.42 -51.93 -0.33 0.69 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 33 H 0.09 1.03 8.12 -51.92 -0.42 0.61 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.88 6.40 -51.93 -0.33 0.54 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -30.47 345.12 -11.51 -41.98 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.54 Total: -3.15 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.38 Total: -18.85 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.42 Total: -34.94 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.36 Total: -5.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.48 Total: -0.11 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.47 -11.51 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075023854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.441 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds