Wall clock time and date at job start Tue Mar 31 2020 11:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.47017 * 110.99979 * 66.04540 * 12 11 10 14 14 C 1.53099 * 109.25894 * 177.60504 * 13 12 11 15 15 O 1.43014 * 109.25447 * 56.85457 * 14 13 12 16 16 C 1.43021 * 113.73578 * 301.32258 * 15 14 13 17 17 H 1.09003 * 109.51074 * 298.74047 * 16 15 14 18 18 C 1.50706 * 109.50511 * 178.65382 * 16 15 14 19 19 C 1.33349 * 125.18702 * 144.72720 * 18 16 15 20 20 C 1.38468 * 114.92702 * 179.79143 * 19 18 16 21 21 C 1.33507 * 114.88532 * 0.49795 * 20 19 18 22 22 Cl 1.73602 * 125.21032 * 179.75265 * 21 20 19 23 23 S 1.75871 * 125.18853 * 325.02594 * 18 16 15 24 24 C 1.47015 * 111.00070 * 302.41452 * 12 11 10 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.08997 * 109.50849 * 297.54548 * 13 12 11 33 33 H 1.09008 * 109.50403 * 57.62630 * 13 12 11 34 34 H 1.09002 * 109.50515 * 176.78090 * 14 13 12 35 35 H 1.08991 * 109.50720 * 296.87108 * 14 13 12 36 36 H 1.07996 * 122.53264 * 359.97205 * 19 18 16 37 37 H 1.07994 * 122.55942 * 180.22635 * 20 19 18 38 38 H 1.08999 * 109.50410 * 302.32251 * 24 12 11 39 39 H 1.08998 * 109.50957 * 62.45561 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.2018 -6.1418 1.2543 14 6 4.1393 -7.3521 1.2361 15 8 4.9858 -7.2757 0.0859 16 6 4.2719 -7.2375 -1.1527 17 1 3.6866 -8.1503 -1.2639 18 6 5.2498 -7.1245 -2.2939 19 6 5.1025 -7.6929 -3.4911 20 6 6.1306 -7.4454 -4.3851 21 6 7.1181 -6.6838 -3.9087 22 17 8.5357 -6.2136 -4.7937 23 16 6.7628 -6.2292 -2.2472 24 6 3.3357 -6.0261 -1.1588 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.7886 -5.2283 1.3501 33 1 2.5163 -6.2242 2.0979 34 1 4.7508 -7.3524 2.1385 35 1 3.5503 -8.2682 1.1952 36 1 4.2448 -8.2979 -3.7453 37 1 6.1354 -7.8420 -5.3895 38 1 2.7481 -6.0248 -2.0768 39 1 3.9246 -5.1107 -1.1016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075023854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:33 Heat of formation + Delta-G solvation = -38.649764 kcal Electronic energy + Delta-G solvation = -21477.813765 eV Core-core repulsion = 18151.016471 eV Total energy + Delta-G solvation = -3326.797294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95582 -38.95493 -37.77181 -37.45131 -35.44195 -33.30084 -33.06304 -30.07263 -28.98122 -26.92875 -25.66961 -24.49217 -23.68931 -22.71414 -20.83134 -20.37943 -18.96126 -18.49028 -17.45529 -16.89080 -16.80206 -16.58810 -16.21847 -15.67919 -15.54606 -15.45083 -14.96978 -14.63606 -14.34106 -14.16816 -13.76964 -13.74096 -13.41533 -13.08094 -12.94618 -12.72370 -12.60932 -12.57410 -12.50447 -12.23571 -12.11624 -11.81172 -11.63538 -11.40931 -11.37204 -11.25972 -10.77026 -10.58730 -9.61169 -9.56755 -9.32782 -8.23488 -6.35219 -0.26109 0.08033 0.86166 1.20850 1.36302 1.37079 1.48270 1.57396 2.37129 2.64607 2.82604 3.08843 3.72253 3.81620 3.95715 4.09760 4.11946 4.26267 4.28657 4.35465 4.43423 4.49071 4.55600 4.63045 4.79405 4.82924 4.89327 4.91829 4.95195 5.07275 5.12357 5.20119 5.31237 5.45536 5.65558 5.80272 5.90013 5.95279 6.09571 6.21644 6.80833 7.34154 8.87446 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003436 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.169681 B = 8148.201829 C = 9801.700399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.127 4.127 11 C 0.064 3.936 12 N -0.526 5.526 13 C 0.007 3.993 14 C 0.070 3.930 15 O -0.396 6.396 16 C 0.173 3.827 17 H 0.106 0.894 18 C -0.178 4.178 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.168 4.168 22 Cl -0.015 7.015 23 S 0.150 5.850 24 C 0.025 3.975 25 H 0.265 0.735 26 H -0.006 1.006 27 H -0.005 1.005 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.093 0.907 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.381 -20.367 -5.492 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.007 4.007 10 C -0.166 4.166 11 C -0.064 4.064 12 N -0.249 5.249 13 C -0.122 4.122 14 C -0.006 4.006 15 O -0.315 6.315 16 C 0.113 3.887 17 H 0.123 0.877 18 C -0.296 4.296 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.311 4.311 22 Cl 0.013 6.987 23 S 0.413 5.587 24 C -0.103 4.103 25 H 0.074 0.926 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.111 0.889 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.064 -19.790 -4.492 24.135 hybrid contribution -0.196 1.413 -1.037 1.763 sum 12.869 -18.377 -5.529 23.106 Atomic orbital electron populations 1.70076 1.07616 1.27828 1.51457 1.25921 0.95769 1.03132 0.94636 0.85521 0.78681 0.78754 0.78575 1.19731 1.20330 1.19096 1.21663 0.93184 0.92742 1.50852 0.93038 1.18893 0.94177 0.92653 0.94993 1.22000 0.98826 0.95997 0.99823 1.22168 0.94399 0.86861 1.02955 1.62604 1.17002 1.42991 1.02350 1.22949 0.97208 0.98648 0.93363 1.22825 0.92653 0.96869 0.88249 1.87977 1.34258 1.94958 1.14307 1.20362 0.88607 0.98439 0.81269 0.87659 1.24384 0.99941 1.05575 0.99730 1.20201 1.01155 1.01927 0.91145 1.20451 0.92155 0.99129 1.02879 1.25534 0.96988 1.09942 0.98675 1.98362 1.36095 1.90929 1.73292 1.84859 1.16559 1.50644 1.06595 1.22813 0.94995 0.97054 0.95487 0.92643 0.98782 0.98683 0.93763 0.93771 0.90656 0.90381 0.95320 0.88279 0.86332 0.90458 0.80464 0.80927 0.88881 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.50 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.62 4.97 29.84 0.15 1.76 16 10 C -0.13 -5.27 4.44 30.59 0.14 -5.13 16 11 C 0.06 2.10 5.38 86.30 0.46 2.57 16 12 N -0.53 -14.34 4.94 -895.20 -4.42 -18.76 16 13 C 0.01 0.16 5.33 86.31 0.46 0.62 16 14 C 0.07 1.38 7.01 72.02 0.50 1.89 16 15 O -0.40 -9.51 10.19 -148.98 -1.52 -11.03 16 16 C 0.17 3.83 3.24 29.88 0.10 3.92 16 17 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.18 -3.84 5.52 24.58 0.14 -3.70 16 19 C -0.11 -1.94 10.04 21.22 0.21 -1.73 16 20 C -0.11 -1.96 10.13 21.25 0.22 -1.74 16 21 C -0.17 -3.49 7.10 66.75 0.47 -3.02 16 22 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16 23 S 0.15 3.57 23.03 -56.49 -1.30 2.27 16 24 C 0.03 0.67 4.40 86.31 0.38 1.05 16 25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.04 1.84 6.61 -2.39 -0.02 1.83 16 29 H 0.04 1.86 6.42 -2.39 -0.02 1.84 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 32 H 0.03 0.84 6.59 -2.39 -0.02 0.83 16 33 H 0.10 2.19 8.12 -2.38 -0.02 2.17 16 34 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 0.93 6.40 -2.39 -0.02 0.92 16 Total: -1.00 -66.06 345.12 -0.04 -66.10 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.04 Total: 5.70 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 3.92 Total: -34.35 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -4.13 Total: -75.19 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.52 Total: -11.03 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.30 Total: 2.27 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -66.06 -0.04 -66.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075023854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.452 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds