Wall clock time and date at job start Tue Mar 31 2020 11:30:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99894 * 2 1
4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1
5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1
6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1
7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1
10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7
12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9
13 13 C 1.47017 * 110.99979 * 66.04540 * 12 11 10
14 14 C 1.53099 * 109.25894 * 177.60504 * 13 12 11
15 15 O 1.43014 * 109.25447 * 56.85457 * 14 13 12
16 16 C 1.43021 * 113.73578 * 301.32258 * 15 14 13
17 17 H 1.09003 * 109.51074 * 298.74047 * 16 15 14
18 18 C 1.50706 * 109.50511 * 178.65382 * 16 15 14
19 19 C 1.33349 * 125.18702 * 144.72720 * 18 16 15
20 20 C 1.38468 * 114.92702 * 179.79143 * 19 18 16
21 21 C 1.33507 * 114.88532 * 0.49795 * 20 19 18
22 22 Cl 1.73602 * 125.21032 * 179.75265 * 21 20 19
23 23 S 1.75871 * 125.18853 * 325.02594 * 18 16 15
24 24 C 1.47015 * 111.00070 * 302.41452 * 12 11 10
25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3
26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2
27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2
28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7
29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7
30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9
31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9
32 32 H 1.08997 * 109.50849 * 297.54548 * 13 12 11
33 33 H 1.09008 * 109.50403 * 57.62630 * 13 12 11
34 34 H 1.09002 * 109.50515 * 176.78090 * 14 13 12
35 35 H 1.08991 * 109.50720 * 296.87108 * 14 13 12
36 36 H 1.07996 * 122.53264 * 359.97205 * 19 18 16
37 37 H 1.07994 * 122.55942 * 180.22635 * 20 19 18
38 38 H 1.08999 * 109.50410 * 302.32251 * 24 12 11
39 39 H 1.08998 * 109.50957 * 62.45561 * 24 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6528 0.6999
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2512 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4350 -6.1036 0.0006
13 6 3.2018 -6.1418 1.2543
14 6 4.1393 -7.3521 1.2361
15 8 4.9858 -7.2757 0.0859
16 6 4.2719 -7.2375 -1.1527
17 1 3.6866 -8.1503 -1.2639
18 6 5.2498 -7.1245 -2.2939
19 6 5.1025 -7.6929 -3.4911
20 6 6.1306 -7.4454 -4.3851
21 6 7.1181 -6.6838 -3.9087
22 17 8.5357 -6.2136 -4.7937
23 16 6.7628 -6.2292 -2.2472
24 6 3.3357 -6.0261 -1.1588
25 1 -0.4850 0.8400 -0.0004
26 1 0.6248 -2.5571 -0.8896
27 1 0.6242 -2.5567 0.8903
28 1 2.8720 -3.6043 0.8905
29 1 2.8720 -3.6042 -0.8894
30 1 0.8534 -5.0451 -0.8886
31 1 0.8541 -5.0445 0.8914
32 1 3.7886 -5.2283 1.3501
33 1 2.5163 -6.2242 2.0979
34 1 4.7508 -7.3524 2.1385
35 1 3.5503 -8.2682 1.1952
36 1 4.2448 -8.2979 -3.7453
37 1 6.1354 -7.8420 -5.3895
38 1 2.7481 -6.0248 -2.0768
39 1 3.9246 -5.1107 -1.1016
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075023854.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:33
Heat of formation + Delta-G solvation = -38.649764 kcal
Electronic energy + Delta-G solvation = -21477.813765 eV
Core-core repulsion = 18151.016471 eV
Total energy + Delta-G solvation = -3326.797294 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.080 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.95582 -38.95493 -37.77181 -37.45131 -35.44195 -33.30084 -33.06304 -30.07263
-28.98122 -26.92875 -25.66961 -24.49217 -23.68931 -22.71414 -20.83134 -20.37943
-18.96126 -18.49028 -17.45529 -16.89080 -16.80206 -16.58810 -16.21847 -15.67919
-15.54606 -15.45083 -14.96978 -14.63606 -14.34106 -14.16816 -13.76964 -13.74096
-13.41533 -13.08094 -12.94618 -12.72370 -12.60932 -12.57410 -12.50447 -12.23571
-12.11624 -11.81172 -11.63538 -11.40931 -11.37204 -11.25972 -10.77026 -10.58730
-9.61169 -9.56755 -9.32782 -8.23488 -6.35219 -0.26109 0.08033 0.86166
1.20850 1.36302 1.37079 1.48270 1.57396 2.37129 2.64607 2.82604
3.08843 3.72253 3.81620 3.95715 4.09760 4.11946 4.26267 4.28657
4.35465 4.43423 4.49071 4.55600 4.63045 4.79405 4.82924 4.89327
4.91829 4.95195 5.07275 5.12357 5.20119 5.31237 5.45536 5.65558
5.80272 5.90013 5.95279 6.09571 6.21644 6.80833 7.34154 8.87446
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.011731 B = 0.003436 C = 0.002856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2386.169681 B = 8148.201829 C = 9801.700399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.004 3.996
3 Si 0.960 3.040
4 H -0.272 1.272
5 H -0.278 1.278
6 H -0.267 1.267
7 C -0.546 4.546
8 H 0.051 0.949
9 C 0.031 3.969
10 C -0.127 4.127
11 C 0.064 3.936
12 N -0.526 5.526
13 C 0.007 3.993
14 C 0.070 3.930
15 O -0.396 6.396
16 C 0.173 3.827
17 H 0.106 0.894
18 C -0.178 4.178
19 C -0.114 4.114
20 C -0.114 4.114
21 C -0.168 4.168
22 Cl -0.015 7.015
23 S 0.150 5.850
24 C 0.025 3.975
25 H 0.265 0.735
26 H -0.006 1.006
27 H -0.005 1.005
28 H 0.044 0.956
29 H 0.044 0.956
30 H 0.075 0.925
31 H 0.078 0.922
32 H 0.028 0.972
33 H 0.099 0.901
34 H 0.119 0.881
35 H 0.077 0.923
36 H 0.178 0.822
37 H 0.173 0.827
38 H 0.093 0.907
39 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.381 -20.367 -5.492 24.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.195 4.195
3 Si 0.785 3.215
4 H -0.197 1.197
5 H -0.203 1.203
6 H -0.191 1.191
7 C -0.584 4.584
8 H 0.070 0.930
9 C -0.007 4.007
10 C -0.166 4.166
11 C -0.064 4.064
12 N -0.249 5.249
13 C -0.122 4.122
14 C -0.006 4.006
15 O -0.315 6.315
16 C 0.113 3.887
17 H 0.123 0.877
18 C -0.296 4.296
19 C -0.144 4.144
20 C -0.146 4.146
21 C -0.311 4.311
22 Cl 0.013 6.987
23 S 0.413 5.587
24 C -0.103 4.103
25 H 0.074 0.926
26 H 0.012 0.988
27 H 0.013 0.987
28 H 0.062 0.938
29 H 0.062 0.938
30 H 0.093 0.907
31 H 0.096 0.904
32 H 0.047 0.953
33 H 0.117 0.883
34 H 0.137 0.863
35 H 0.095 0.905
36 H 0.195 0.805
37 H 0.191 0.809
38 H 0.111 0.889
39 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 13.064 -19.790 -4.492 24.135
hybrid contribution -0.196 1.413 -1.037 1.763
sum 12.869 -18.377 -5.529 23.106
Atomic orbital electron populations
1.70076 1.07616 1.27828 1.51457 1.25921 0.95769 1.03132 0.94636
0.85521 0.78681 0.78754 0.78575 1.19731 1.20330 1.19096 1.21663
0.93184 0.92742 1.50852 0.93038 1.18893 0.94177 0.92653 0.94993
1.22000 0.98826 0.95997 0.99823 1.22168 0.94399 0.86861 1.02955
1.62604 1.17002 1.42991 1.02350 1.22949 0.97208 0.98648 0.93363
1.22825 0.92653 0.96869 0.88249 1.87977 1.34258 1.94958 1.14307
1.20362 0.88607 0.98439 0.81269 0.87659 1.24384 0.99941 1.05575
0.99730 1.20201 1.01155 1.01927 0.91145 1.20451 0.92155 0.99129
1.02879 1.25534 0.96988 1.09942 0.98675 1.98362 1.36095 1.90929
1.73292 1.84859 1.16559 1.50644 1.06595 1.22813 0.94995 0.97054
0.95487 0.92643 0.98782 0.98683 0.93763 0.93771 0.90656 0.90381
0.95320 0.88279 0.86332 0.90458 0.80464 0.80927 0.88881 0.95270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16
2 C 0.00 0.21 5.46 84.65 0.46 0.67 16
3 Si 0.96 44.85 29.54 68.60 2.03 46.88 16
4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16
6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
7 C -0.55 -31.74 9.11 25.60 0.23 -31.50 16
8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16
9 C 0.03 1.62 4.97 29.84 0.15 1.76 16
10 C -0.13 -5.27 4.44 30.59 0.14 -5.13 16
11 C 0.06 2.10 5.38 86.30 0.46 2.57 16
12 N -0.53 -14.34 4.94 -895.20 -4.42 -18.76 16
13 C 0.01 0.16 5.33 86.31 0.46 0.62 16
14 C 0.07 1.38 7.01 72.02 0.50 1.89 16
15 O -0.40 -9.51 10.19 -148.98 -1.52 -11.03 16
16 C 0.17 3.83 3.24 29.88 0.10 3.92 16
17 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16
18 C -0.18 -3.84 5.52 24.58 0.14 -3.70 16
19 C -0.11 -1.94 10.04 21.22 0.21 -1.73 16
20 C -0.11 -1.96 10.13 21.25 0.22 -1.74 16
21 C -0.17 -3.49 7.10 66.75 0.47 -3.02 16
22 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16
23 S 0.15 3.57 23.03 -56.49 -1.30 2.27 16
24 C 0.03 0.67 4.40 86.31 0.38 1.05 16
25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16
26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
27 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
28 H 0.04 1.84 6.61 -2.39 -0.02 1.83 16
29 H 0.04 1.86 6.42 -2.39 -0.02 1.84 16
30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
31 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16
32 H 0.03 0.84 6.59 -2.39 -0.02 0.83 16
33 H 0.10 2.19 8.12 -2.38 -0.02 2.17 16
34 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16
35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16
37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16
38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
39 H 0.03 0.93 6.40 -2.39 -0.02 0.92 16
Total: -1.00 -66.06 345.12 -0.04 -66.10
By element:
Atomic # 1 Polarization: 4.66 SS G_CDS: 1.04 Total: 5.70 kcal
Atomic # 6 Polarization: -38.27 SS G_CDS: 3.92 Total: -34.35 kcal
Atomic # 7 Polarization: -71.06 SS G_CDS: -4.13 Total: -75.19 kcal
Atomic # 8 Polarization: -9.51 SS G_CDS: -1.52 Total: -11.03 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal
Atomic # 16 Polarization: 3.57 SS G_CDS: -1.30 Total: 2.27 kcal
Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal
Total: -66.06 -0.04 -66.10 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075023854.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.452 kcal
(2) G-P(sol) polarization free energy of solvation -66.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds