Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47009 * 300.00138 * 3 2 1 6 6 H 1.48499 * 109.47277 * 59.99918 * 3 2 1 7 7 C 1.37881 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47414 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47608 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47280 * 180.02562 * 11 10 9 13 13 C 1.47010 * 111.00052 * 46.36430 * 12 11 10 14 14 C 1.53103 * 109.26073 * 182.38957 * 13 12 11 15 15 O 1.43012 * 109.25715 * 303.16031 * 14 13 12 16 16 C 1.43012 * 113.74365 * 58.66867 * 15 14 13 17 17 H 1.08997 * 109.50952 * 61.25824 * 16 15 14 18 18 C 1.50705 * 109.54343 * 181.37267 * 16 15 14 19 19 C 1.33348 * 125.18771 * 219.51978 * 18 16 15 20 20 C 1.38471 * 114.92655 * 179.79466 * 19 18 16 21 21 C 1.33498 * 114.88573 * 0.50222 * 20 19 18 22 22 Cl 1.73600 * 125.20880 * 179.71649 * 21 20 19 23 23 S 1.75877 * 125.18848 * 39.82751 * 18 16 15 24 24 C 1.47016 * 111.00272 * 170.00664 * 12 11 10 25 25 H 0.96995 * 120.00495 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47206 * 60.00319 * 9 7 2 27 27 H 1.09006 * 109.47513 * 300.00414 * 9 7 2 28 28 H 1.09005 * 109.46649 * 60.00008 * 10 9 7 29 29 H 1.09006 * 109.47143 * 300.00671 * 10 9 7 30 30 H 1.09002 * 109.46578 * 60.00532 * 11 10 9 31 31 H 1.08993 * 109.47297 * 300.00763 * 11 10 9 32 32 H 1.09008 * 109.50529 * 62.46151 * 13 12 11 33 33 H 1.08995 * 109.51144 * 302.32740 * 13 12 11 34 34 H 1.08995 * 109.50870 * 183.21645 * 14 13 12 35 35 H 1.09007 * 109.50288 * 63.08721 * 14 13 12 36 36 H 1.08002 * 122.53455 * 359.97438 * 19 18 16 37 37 H 1.08007 * 122.55758 * 180.23772 * 20 19 18 38 38 H 1.08999 * 109.50851 * 57.66502 * 24 12 11 39 39 H 1.09004 * 109.50278 * 297.54265 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0018 13 6 3.4980 -5.8885 0.9907 14 6 4.5007 -7.0430 0.9152 15 8 3.8121 -8.2798 1.1185 16 6 2.7706 -8.5219 0.1689 17 1 3.1959 -8.5701 -0.8335 18 6 2.0892 -9.8273 0.4898 19 6 1.6768 -10.7204 -0.4104 20 6 1.0794 -11.8511 0.1207 21 6 0.9978 -11.8702 1.4531 22 17 0.2961 -13.1487 2.3947 23 16 1.7098 -10.4014 2.1083 24 6 1.7504 -7.3825 0.2370 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8727 -3.6047 0.8878 29 1 2.8715 -3.6039 -0.8923 30 1 0.8529 -5.0447 -0.8906 31 1 0.8548 -5.0450 0.8894 32 1 3.0616 -5.8503 1.9889 33 1 4.0084 -4.9488 0.7797 34 1 5.2594 -6.9174 1.6876 35 1 4.9764 -7.0483 -0.0656 36 1 1.8019 -10.5743 -1.4731 37 1 0.7041 -12.6544 -0.4961 38 1 0.9849 -7.5332 -0.5243 39 1 1.2860 -7.3681 1.2230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075023855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -37.148917 kcal Electronic energy + Delta-G solvation = -21078.179278 eV Core-core repulsion = 17751.447066 eV Total energy + Delta-G solvation = -3326.732213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90631 -38.96213 -37.74547 -37.41296 -35.47961 -33.52858 -32.97520 -30.12421 -29.08518 -26.92264 -25.54179 -24.59551 -23.76900 -22.02578 -21.25421 -20.39045 -18.95255 -18.46222 -17.32076 -17.04798 -16.77615 -16.48190 -16.43604 -15.98418 -15.58390 -15.11941 -14.99294 -14.63402 -14.37649 -14.23139 -13.84071 -13.62527 -13.35639 -13.16462 -13.02993 -12.75863 -12.71015 -12.48384 -12.42102 -12.14028 -12.00718 -11.74797 -11.63540 -11.45088 -11.35928 -11.14690 -10.73416 -10.56052 -9.62462 -9.58786 -9.41743 -8.20863 -6.31785 -0.27905 0.06681 0.84125 1.20266 1.40072 1.40342 1.53654 1.55797 2.40226 2.63425 2.75938 3.12613 3.68049 3.79960 3.96365 4.04370 4.10981 4.23734 4.27480 4.32839 4.47396 4.50683 4.56130 4.64543 4.74155 4.77959 4.87927 4.91307 4.99223 5.05243 5.10511 5.21793 5.30283 5.50268 5.71047 5.84084 5.90211 5.93226 6.07879 6.24688 6.85449 7.37635 8.91306 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.002249 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.570045 B =12446.155488 C =12844.659922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.067 3.933 12 N -0.535 5.535 13 C 0.007 3.993 14 C 0.070 3.930 15 O -0.393 6.393 16 C 0.171 3.829 17 H 0.102 0.898 18 C -0.178 4.178 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.166 4.166 22 Cl -0.014 7.014 23 S 0.155 5.845 24 C 0.029 3.971 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.012 1.012 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.097 0.903 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -26.578 0.937 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.060 4.060 12 N -0.260 5.260 13 C -0.121 4.121 14 C -0.006 4.006 15 O -0.312 6.312 16 C 0.111 3.889 17 H 0.119 0.881 18 C -0.297 4.297 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.310 4.310 22 Cl 0.014 6.986 23 S 0.419 5.581 24 C -0.100 4.100 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.193 0.807 37 H 0.190 0.810 38 H 0.115 0.885 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.812 -26.182 2.194 26.909 hybrid contribution -0.916 0.694 -0.469 1.242 sum 4.895 -25.488 1.725 26.011 Atomic orbital electron populations 1.70102 1.07832 1.27706 1.51837 1.26005 0.95781 1.03456 0.94806 0.85392 0.79152 0.78731 0.77736 1.18427 1.20386 1.20487 1.21707 0.93574 0.92241 1.50238 0.92046 1.18975 0.94425 0.93149 0.94725 1.21526 0.98154 0.92494 1.01049 1.22070 0.93878 0.89916 1.00181 1.62320 1.12897 1.01839 1.48911 1.22983 0.94438 1.01201 0.93471 1.22823 0.93321 0.80790 1.03654 1.87974 1.49086 1.39946 1.54225 1.20348 0.86848 0.87876 0.93803 0.88058 1.24320 1.08119 1.00869 0.96362 1.20217 0.99990 0.91925 1.02146 1.20443 1.01300 1.00490 0.92419 1.25532 1.11077 0.97911 0.96470 1.98367 1.81945 1.46808 1.71453 1.84763 1.55157 1.10571 1.07641 1.22824 0.96936 0.89238 1.00955 0.92796 0.98883 0.99393 0.92600 0.92272 0.90754 0.95996 0.95130 0.88604 0.86171 0.90915 0.80679 0.80988 0.88457 0.95120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.80 4.42 30.59 0.14 -3.66 16 11 C 0.07 2.28 5.28 86.30 0.46 2.73 16 12 N -0.54 -14.96 4.88 -895.23 -4.36 -19.32 16 13 C 0.01 0.18 4.94 86.32 0.43 0.61 16 14 C 0.07 1.44 7.01 72.02 0.50 1.94 16 15 O -0.39 -9.06 10.27 -148.98 -1.53 -10.59 16 16 C 0.17 3.54 3.24 29.88 0.10 3.64 16 17 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16 18 C -0.18 -3.41 5.48 24.58 0.13 -3.28 16 19 C -0.11 -1.68 10.04 21.22 0.21 -1.46 16 20 C -0.11 -1.69 10.13 21.25 0.22 -1.47 16 21 C -0.17 -2.97 7.10 66.75 0.47 -2.50 16 22 Cl -0.01 -0.24 29.29 -2.72 -0.08 -0.32 16 23 S 0.15 3.16 23.12 -56.49 -1.31 1.86 16 24 C 0.03 0.70 4.89 86.31 0.42 1.12 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 26 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 28 H 0.06 2.17 6.28 -2.38 -0.01 2.16 16 29 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 2.56 6.05 -2.39 -0.01 2.55 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -64.93 347.75 -0.01 -64.94 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.04 Total: 4.93 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.92 Total: -30.92 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -4.08 Total: -76.04 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.53 Total: -10.59 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.31 Total: 1.86 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -64.93 -0.01 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075023855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.791 kcal (2) G-P(sol) polarization free energy of solvation -64.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds